Created
April 28, 2016 16:59
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Yaml Output of the CommandLineTool object
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!!org.commonwl.lang.CommandLineTool | |
arguments: null | |
baseCommand: wc | |
class: null | |
cwlVersion: null | |
description: null | |
hints: null | |
id: null | |
inputs: | |
- {default: null, description: null, format: null, id: null, inputBinding: null, label: null, | |
secondaryFiles: null, streamable: null, type: File} | |
- null | |
label: null | |
outputs: | |
- description: null | |
format: null | |
id: null | |
label: null | |
outputBinding: {glob: output, loadContents: null, outputEval: null} | |
secondaryFiles: null | |
streamable: null | |
type: null | |
- null | |
- null | |
permanentFailCodes: null | |
requirements: null | |
stdin: inputs.file1.path | |
stdout: output | |
successCodes: null | |
temporaryFailCodes: null | |
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// Compile: ./compile-demo2yaml.sh | |
// | |
// Run: ./run-demo2yaml.sh wc-tool.cwl wc-job.json > CommandLineTool_YamlOutput.txt | |
import java.util.*; | |
import org.commonwl.lang.*; | |
import org.commonwl.util.*; | |
import org.yaml.snakeyaml.*; | |
public class CommandLineToolDemo2YamlOutput { | |
public static void main( String [] args ) throws Exception { | |
CWLReader tool = new CWLReader( args[0] ); | |
tool.processFile(); | |
CommandLineTool CommandLineTool_Instance = tool.getCommandLineToolInstance(); | |
Yaml yaml = new Yaml(); | |
String output = yaml.dump(CommandLineTool_Instance); | |
System.out.println(output); | |
} | |
} |
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