ml_monsoon_batchtools_install_error.txt

> install.packages("batchtools")
Installing package into ‘/home/jaf582/R/4.1’
(as ‘lib’ is unspecified)
also installing the dependencies ‘lifecycle’, ‘vctrs’, ‘hms’, ‘base64url’, ‘checkmate’, ‘progress’

trying URL 'http://cloud.r-project.org/src/contrib/lifecycle_1.0.3.tar.gz'
Content type 'application/x-gzip' length 106854 bytes (104 KB)
==================================================
downloaded 104 KB

trying URL 'http://cloud.r-project.org/src/contrib/vctrs_0.6.1.tar.gz'
Content type 'application/x-gzip' length 964734 bytes (942 KB)
==================================================
downloaded 942 KB

trying URL 'http://cloud.r-project.org/src/contrib/hms_1.1.3.tar.gz'
Content type 'application/x-gzip' length 43379 bytes (42 KB)
==================================================
downloaded 42 KB

trying URL 'http://cloud.r-project.org/src/contrib/base64url_1.4.tar.gz'
Content type 'application/x-gzip' length 15868 bytes (15 KB)
==================================================
downloaded 15 KB

trying URL 'http://cloud.r-project.org/src/contrib/checkmate_2.1.0.tar.gz'
Content type 'application/x-gzip' length 170034 bytes (166 KB)
==================================================
downloaded 166 KB

trying URL 'http://cloud.r-project.org/src/contrib/progress_1.2.2.tar.gz'
Content type 'application/x-gzip' length 29506 bytes (28 KB)
==================================================
downloaded 28 KB

trying URL 'http://cloud.r-project.org/src/contrib/batchtools_0.9.16.tar.gz'
Content type 'application/x-gzip' length 716372 bytes (699 KB)
==================================================
downloaded 699 KB

* installing *source* package ‘lifecycle’ ...
** package ‘lifecycle’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
  there is no package called ‘rlang’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
ERROR: lazy loading failed for package ‘lifecycle’
* removing ‘/home/jaf582/R/4.1/lifecycle’
* installing *source* package ‘base64url’ ...
** package ‘base64url’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c base32.c -o base32.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c base64.c -o base64.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
gcc -shared -L/packages/R/4.1.2/lib64/R/lib -L/usr/local/lib64 -o base64url.so base32.o base64.o init.o -L/packages/R/4.1.2/lib64/R/lib -lR
installing to /home/jaf582/R/4.1/00LOCK-base64url/00new/base64url/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘base64url’:
 .onLoad failed in loadNamespace() for 'base64url', details:
  call: loadNamespace(x)
  error: there is no package called ‘backports’
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/jaf582/R/4.1/base64url’
* installing *source* package ‘checkmate’ ...
** package ‘checkmate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c all_missing.c -o all_missing.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c any_infinite.c -o any_infinite.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c any_missing.c -o any_missing.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c any_nan.c -o any_nan.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c checks.c -o checks.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c find_nchar.c -o find_nchar.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c guess_type.c -o guess_type.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c helper.c -o helper.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c integerish.c -o integerish.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c is_sorted.c -o is_sorted.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c qassert.c -o qassert.o
gcc -I"/packages/R/4.1.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c which_first.c -o which_first.o
gcc -shared -L/packages/R/4.1.2/lib64/R/lib -L/usr/local/lib64 -o checkmate.so all_missing.o any_infinite.o any_missing.o any_nan.o checks.o find_nchar.o guess_type.o helper.o init.o integerish.o is_sorted.o qassert.o which_first.o -L/packages/R/4.1.2/lib64/R/lib -lR
installing to /home/jaf582/R/4.1/00LOCK-checkmate/00new/checkmate/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘checkmate’:
 .onLoad failed in loadNamespace() for 'checkmate', details:
  call: loadNamespace(x)
  error: there is no package called ‘backports’
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/jaf582/R/4.1/checkmate’
ERROR: dependency ‘lifecycle’ is not available for package ‘vctrs’
* removing ‘/home/jaf582/R/4.1/vctrs’
ERROR: dependencies ‘lifecycle’, ‘vctrs’ are not available for package ‘hms’
* removing ‘/home/jaf582/R/4.1/hms’
ERROR: dependency ‘hms’ is not available for package ‘progress’
* removing ‘/home/jaf582/R/4.1/progress’
ERROR: dependencies ‘base64url’, ‘checkmate’, ‘progress’ are not available for package ‘batchtools’
* removing ‘/home/jaf582/R/4.1/batchtools’

The downloaded source packages are in
	‘/tmp/jaf582/64283386/RtmpahaQrL/downloaded_packages’
Warning messages:
1: In install.packages("batchtools") :
  installation of package ‘lifecycle’ had non-zero exit status
2: In install.packages("batchtools") :
  installation of package ‘base64url’ had non-zero exit status
3: In install.packages("batchtools") :
  installation of package ‘checkmate’ had non-zero exit status
4: In install.packages("batchtools") :
  installation of package ‘vctrs’ had non-zero exit status
5: In install.packages("batchtools") :
  installation of package ‘hms’ had non-zero exit status
6: In install.packages("batchtools") :
  installation of package ‘progress’ had non-zero exit status
7: In install.packages("batchtools") :
  installation of package ‘batchtools’ had non-zero exit status