Masurca 01.install.sh

gistfile1.txt

2016-02-29 13:13:28 +1000

./install.sh

++ pwd
+ ROOT=/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b
+ '[' -z /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b ']'
+ mkdir -p dist-bin
+ PATH=/home/pbayer/.rbenv/versions/2.3.0/bin:/gpfs1/homes/pbayer/.rbenv/libexec:/home/pbayer/.rbenv/plugins/ruby-build/bin:/gpfs1/homes/pbayer/.linuxbrew/bin:/gpfs1/homes/pbayer/.linuxbrew/sbin:/home/pbayer/.rbenv/shims:/90days/uqccha18/groupEnv/flashlite/scripts:/90days/uqccha18/groupEnv/flashlite/apps/bin:/90days/uqccha18/groupEnv/flashlite/bin:.:/home/pbayer/.linuxbrew/bin:/home/pbayer/.rbenv/bin:/home/pbayer/jre1.8.0_74/bin:/home/pbayer/localpython/bin:/home/pbayer/localperl/bin:/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/opt/torque-rcc/default/bin:/opt/torque-rcc/default/sbin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/bio/ncbi/bin:/opt/bio/mpiblast/bin:/opt/bio/EMBOSS/bin:/opt/bio/clustalw/bin:/opt/bio/tcoffee/bin:/opt/bio/hmmer/bin:/opt/bio/phylip/exe:/opt/bio/mrbayes:/opt/bio/fasta:/opt/bio/glimmer/bin:/opt/bio/glimmer/scripts:/opt/bio/gromacs/bin:/opt/bio/gmap/bin:/opt/bio/tigr/bin:/opt/bio/autodocksuite/bin:/opt/bio/wgs/bin:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/ibutils/bin:/usr/java/latest/bin:/opt/maui-rcc/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/home/pbayer/bin:/gpfs1/homes/pbayer/.linuxbrew/Library/ENV/scm:/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/dist-bin
++ which make
+ ln -s /usr/bin/make /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/dist-bin/gmake
+ ln -s /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/PkgConfig.pm /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/dist-bin/pkg-config
+ export JF_DIR=jellyfish
+ JF_DIR=jellyfish
+ export SR_DIR=SuperReads
+ SR_DIR=SuperReads
+ export QR_DIR=quorum
+ QR_DIR=quorum
++ grep -c '^processor' /proc/cpuinfo
+ export NUM_THREADS=24
+ NUM_THREADS=24
+ cd jellyfish
+ ./configure --prefix=/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b --program-suffix=-2.0
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 accepts -g... yes
checking for /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 option to accept ISO C89... none needed
checking dependency style of /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5... /gpfs1/homes/pbayer/.linuxbrew/bin/ld
checking if the linker (/gpfs1/homes/pbayer/.linuxbrew/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /gpfs1/homes/pbayer/.linuxbrew/bin/nm -B
checking the name lister (/gpfs1/homes/pbayer/.linuxbrew/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /gpfs1/homes/pbayer/.linuxbrew/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /gpfs1/homes/pbayer/.linuxbrew/bin/nm -B output from /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 supports -fno-rtti -fno-exceptions... yes
checking for /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 option to produce PIC... -fPIC -DPIC
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 PIC flag -fPIC -DPIC works... yes
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 static flag -static works... yes
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 supports -c -o file.o... yes
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 supports -c -o file.o... (cached) yes
checking whether the /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 linker (/gpfs1/homes/pbayer/.linuxbrew/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether we are using the GNU C++ compiler... yes
checking whether /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 accepts -g... yes
checking dependency style of /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5... gcc3
checking how to run the C++ preprocessor... /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -E
checking for ld used by /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5... /gpfs1/homes/pbayer/.linuxbrew/bin/ld -m elf_x86_64
checking if the linker (/gpfs1/homes/pbayer/.linuxbrew/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 linker (/gpfs1/homes/pbayer/.linuxbrew/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 option to produce PIC... -fPIC -DPIC
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 PIC flag -fPIC -DPIC works... yes
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 static flag -static works... yes
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 supports -c -o file.o... yes
checking if /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 supports -c -o file.o... (cached) yes
checking whether the /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 linker (/gpfs1/homes/pbayer/.linuxbrew/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for md5sum... md5sum
checking for yaggo... false
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for __int128... yes
checking for std::numeric_limits<__int128>... no
checking for _NSGetExecutablePath... no
checking for execinfo.h... yes
checking for ext/stdio_filebuf.h... yes
checking for siginfo_t.si_int... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tests/compat.sh
config.status: creating jellyfish-2.0.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
+ make -j 24 install
make  install-am
make[1]: Entering directory `/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/jellyfish'
  CXX    lib/rectangular_binary_matrix.lo
  CXX    lib/mer_dna.lo
  CXX    lib/storage.lo
  CXX    lib/allocators_mmap.lo
  CXX    lib/misc.lo
  CXX    lib/int128.lo
  CXX    lib/thread_exec.lo
  CXX    lib/jsoncpp.lo
  CXX    lib/time.lo
  CXX    lib/generator_manager.lo
  CXX    sub_commands/jellyfish.o
  CXX    sub_commands/count_main.o
  CXX    sub_commands/info_main.o
  CXX    sub_commands/dump_main.o
  CXX    sub_commands/histo_main.o
  CXX    sub_commands/stats_main.o
  CXX    sub_commands/merge_main.o
  CXX    sub_commands/bc_main.o
  CXX    sub_commands/query_main.o
  CXX    sub_commands/mem_main.o
  CXX    sub_commands/cite_main.o
  CXX    jellyfish/merge_files.o
  CXXLD  libjellyfish-2.0.la
  CXXLD  bin/jellyfish
make[2]: Entering directory `/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/jellyfish'
 /bin/mkdir -p '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3/jellyfish'
 /bin/mkdir -p '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/pkgconfig'
 /bin/mkdir -p '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib'
 /bin/mkdir -p '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/share/man/man1'
 /bin/sh ./libtool   --mode=install /usr/bin/install -c   libjellyfish-2.0.la '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib'
 /usr/bin/install -c -m 644 jellyfish-2.0.pc '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/pkgconfig'
 /usr/bin/install -c -m 644 include/jellyfish/allocators_mmap.hpp include/jellyfish/backtrace.hpp include/jellyfish/atomic_gcc.hpp include/jellyfish/large_hash_array.hpp include/jellyfish/err.hpp include/jellyfish/misc.hpp include/jellyfish/offsets_key_value.hpp include/jellyfish/int128.hpp include/jellyfish/rectangular_binary_matrix.hpp include/jellyfish/mer_dna.hpp include/jellyfish/storage.hpp include/jellyfish/simple_circular_buffer.hpp include/jellyfish/circular_buffer.hpp include/jellyfish/atomic_field.hpp include/jellyfish/compare_and_swap.hpp include/jellyfish/divisor.hpp include/jellyfish/large_hash_iterator.hpp include/jellyfish/jellyfish.hpp include/jellyfish/thread_exec.hpp include/jellyfish/stream_iterator.hpp include/jellyfish/mer_overlap_sequence_parser.hpp include/jellyfish/whole_sequence_parser.hpp include/jellyfish/binary_dumper.hpp include/jellyfish/sorted_dumper.hpp include/jellyfish/text_dumper.hpp include/jellyfish/dumper.hpp include/jellyfish/time.hpp include/jellyfish/mer_heap.hpp include/jellyfish/token_ring.hpp include/jellyfish/locks_pthread.hpp include/jellyfish/file_header.hpp include/jellyfish/generic_file_header.hpp include/jellyfish/json.h include/jellyfish/hash_counter.hpp include/jellyfish/mapped_file.hpp include/jellyfish/mer_dna_bloom_counter.hpp include/jellyfish/bloom_common.hpp include/jellyfish/bloom_counter2.hpp include/jellyfish/bloom_filter.hpp include/jellyfish/cooperative_pool.hpp '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3/jellyfish'
 /usr/bin/install -c -m 644 'doc/jellyfish.man' '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/share/man/man1/jellyfish-2.0.1'
 /usr/bin/install -c -m 644 include/jellyfish/cooperative_pool2.hpp include/jellyfish/stream_manager.hpp include/jellyfish/generator_manager.hpp include/jellyfish/cpp_array.hpp include/jellyfish/mer_iterator.hpp include/jellyfish/atomic_bits_array.hpp include/jellyfish/stdio_filebuf.hpp include/jellyfish/mer_qual_iterator.hpp '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3/jellyfish'
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.so.2.0.0 /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/libjellyfish-2.0.so.2.0.0
libtool: install: (cd /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2 || { rm -f libjellyfish-2.0.so.2 && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so.2; }; })
libtool: install: (cd /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib && { ln -s -f libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so || { rm -f libjellyfish-2.0.so && ln -s libjellyfish-2.0.so.2.0.0 libjellyfish-2.0.so; }; })
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.lai /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/libjellyfish-2.0.la
libtool: install: /usr/bin/install -c .libs/libjellyfish-2.0.a /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/libjellyfish-2.0.a
libtool: install: chmod 644 /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/libjellyfish-2.0.a
libtool: install: ranlib /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/libjellyfish-2.0.a
libtool: finish: PATH="/home/pbayer/.rbenv/versions/2.3.0/bin:/gpfs1/homes/pbayer/.rbenv/libexec:/home/pbayer/.rbenv/plugins/ruby-build/bin:/gpfs1/homes/pbayer/.linuxbrew/bin:/gpfs1/homes/pbayer/.linuxbrew/sbin:/home/pbayer/.rbenv/shims:/90days/uqccha18/groupEnv/flashlite/scripts:/90days/uqccha18/groupEnv/flashlite/apps/bin:/90days/uqccha18/groupEnv/flashlite/bin:.:/home/pbayer/.linuxbrew/bin:/home/pbayer/.rbenv/bin:/home/pbayer/jre1.8.0_74/bin:/home/pbayer/localpython/bin:/home/pbayer/localperl/bin:/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/opt/torque-rcc/default/bin:/opt/torque-rcc/default/sbin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/bio/ncbi/bin:/opt/bio/mpiblast/bin:/opt/bio/EMBOSS/bin:/opt/bio/clustalw/bin:/opt/bio/tcoffee/bin:/opt/bio/hmmer/bin:/opt/bio/phylip/exe:/opt/bio/mrbayes:/opt/bio/fasta:/opt/bio/glimmer/bin:/opt/bio/glimmer/scripts:/opt/bio/gromacs/bin:/opt/bio/gmap/bin:/opt/bio/tigr/bin:/opt/bio/autodocksuite/bin:/opt/bio/wgs/bin:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/ibutils/bin:/usr/java/latest/bin:/opt/maui-rcc/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/home/pbayer/bin:/gpfs1/homes/pbayer/.linuxbrew/Library/ENV/scm:/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/dist-bin:/sbin" ldconfig -n /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /bin/mkdir -p '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/bin'
  /bin/sh ./libtool   --mode=install /usr/bin/install -c bin/jellyfish '/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/bin/./jellyfish-2.0'
libtool: install: /usr/bin/install -c bin/.libs/jellyfish /gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/bin/./jellyfish-2.0
make[2]: Leaving directory `/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/jellyfish'
make[1]: Leaving directory `/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/jellyfish'
++ make -s -C jellyfish print-pkgconfigdir
+ export PKG_CONFIG_PATH=/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/pkgconfig:
+ PKG_CONFIG_PATH=/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib/pkgconfig:
++ make -s -C jellyfish print-bindir
+ BINDIR=/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/bin
++ make -s -C jellyfish print-libdir
+ LIBDIR=/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib
+ PATH=/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/bin:/home/pbayer/.rbenv/versions/2.3.0/bin:/gpfs1/homes/pbayer/.rbenv/libexec:/home/pbayer/.rbenv/plugins/ruby-build/bin:/gpfs1/homes/pbayer/.linuxbrew/bin:/gpfs1/homes/pbayer/.linuxbrew/sbin:/home/pbayer/.rbenv/shims:/90days/uqccha18/groupEnv/flashlite/scripts:/90days/uqccha18/groupEnv/flashlite/apps/bin:/90days/uqccha18/groupEnv/flashlite/bin:.:/home/pbayer/.linuxbrew/bin:/home/pbayer/.rbenv/bin:/home/pbayer/jre1.8.0_74/bin:/home/pbayer/localpython/bin:/home/pbayer/localperl/bin:/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/opt/torque-rcc/default/bin:/opt/torque-rcc/default/sbin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/bio/ncbi/bin:/opt/bio/mpiblast/bin:/opt/bio/EMBOSS/bin:/opt/bio/clustalw/bin:/opt/bio/tcoffee/bin:/opt/bio/hmmer/bin:/opt/bio/phylip/exe:/opt/bio/mrbayes:/opt/bio/fasta:/opt/bio/glimmer/bin:/opt/bio/glimmer/scripts:/opt/bio/gromacs/bin:/opt/bio/gmap/bin:/opt/bio/tigr/bin:/opt/bio/autodocksuite/bin:/opt/bio/wgs/bin:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/ibutils/bin:/usr/java/latest/bin:/opt/maui-rcc/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/home/pbayer/bin:/gpfs1/homes/pbayer/.linuxbrew/Library/ENV/scm:/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/dist-bin
+ cd CA/kmer
+ ./configure.sh
WARNING:  'python' program found, but can't find include file 'Python.h' -- is python installed correctly?
WARNING:  Set PYTHONHOME to the directory containing include/Pyhton.h
WARNING:  Will not build ATAC.
cc -Os -w -pipe -march=core2 -L/usr/local/lib -o ./makepath build/makepath.c -pthread -ldl -lm -lbz2
Configured.
+ make
making ../kmer/libutil/kazlib/sfx.c.d
making ../kmer/libutil/kazlib/list.c.d
making ../kmer/libutil/kazlib/hash.c.d
making ../kmer/libutil/kazlib/except.c.d
making ../kmer/libutil/kazlib/dict.c.d
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/mt19937ar/mt19937ar.o -c ../kmer/libutil/mt19937ar/mt19937ar.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/mt19937ar/mt19937ar-test.o -c ../kmer/libutil/mt19937ar/mt19937ar-test.c
cc -L/usr/local/lib -o ../kmer/libutil/mt19937ar/mt19937ar-test ../kmer/libutil/mt19937ar/mt19937ar.o ../kmer/libutil/mt19937ar/mt19937ar-test.o -pthread -ldl -lm -lbz2
../kmer/libutil/mt19937ar/mt19937ar-test | diff - ../kmer/libutil/mt19937ar/mt19937ar.out > ../kmer/libutil/mt19937ar/diffs 2>&1
if test -s ../kmer/libutil/mt19937ar/diffs ; then echo 'MT19937: TEST FAILED'; else echo 'MT19937: Test Passed'; fi
MT19937: Test Passed
touch ../kmer/libutil/mt19937ar/test.c
../kmer/libutil/mt19937ar/mt19937ar-test | diff - ../kmer/libutil/mt19937ar/mt19937ar.out
making ../kmer/libutil/mt19937ar/test.c.d
making ../kmer/libutil/mt19937ar/mt19937ar.c.d
making ../kmer/libutil/sweatShop.C.d
making ../kmer/libutil/speedCounter.C.d
making ../kmer/libutil/recordFile.C.d
making ../kmer/libutil/readBuffer.C.d
making ../kmer/libutil/intervalList.C.d
making ../kmer/libutil/fibonacciNumbers.C.d
making ../kmer/libutil/bitPackedFile.C.d
making ../kmer/libutil/bitPackedArray.C.d
making ../kmer/libutil/bigQueue.C.d
making ../kmer/libutil/util.c.d
making ../kmer/libutil/qsort_mt.c.d
making ../kmer/libutil/palloc.c.d
making ../kmer/libutil/md5.c.d
making ../kmer/libutil/file.c.d
making ../kmer/libseq/test-merStream.C.d
making ../kmer/libseq/test-seqStream.C.d
making ../kmer/libseq/test-seqCache.C.d
making ../kmer/libseq/merStream.C.d
making ../kmer/libseq/seqStream.C.d
making ../kmer/libseq/seqCache.C.d
making ../kmer/libseq/seqFactory.C.d
making ../kmer/libseq/sffFile.C.d
making ../kmer/libseq/seqStore.C.d
making ../kmer/libseq/fastaStdin.C.d
making ../kmer/libseq/fastaFile.C.d
making ../kmer/libbio/reversecomplement.c.d
making ../kmer/libbio/halign.c.d
making ../kmer/libbio/alphabet-colorspace.c.d
making ../kmer/libbio/alphabet-acgtspace.c.d
making ../kmer/libbio/alphabet.c.d
making ../kmer/libmeryl/libmeryl.C.d
making ../kmer/libkmer/mask.C.d
making ../kmer/libkmer/percentCovered.C.d
making ../kmer/libkmer/driver-posDB.C.d
making ../kmer/libkmer/driver-existDB.C.d
making ../kmer/libkmer/positionDB.C.d
making ../kmer/libkmer/positionDB-sort.C.d
making ../kmer/libkmer/positionDB-mismatch.C.d
making ../kmer/libkmer/positionDB-file.C.d
making ../kmer/libkmer/positionDB-dump.C.d
making ../kmer/libkmer/positionDB-access.C.d
making ../kmer/libkmer/existDB.C.d
making ../kmer/libkmer/existDB-state.C.d
making ../kmer/libkmer/existDB-create-from-meryl.C.d
making ../kmer/libkmer/existDB-create-from-fasta.C.d
making meryl/maskMers.C.d
making meryl/mapMers-depth.C.d
making meryl/mapMers.C.d
making meryl/asmMerQC.C.d
making meryl/meryl.C.d
making meryl/unaryOp.C.d
making meryl/merge.C.d
making meryl/estimate.C.d
making meryl/dump.C.d
making meryl/build-threads.C.d
making meryl/build.C.d
making meryl/binaryOp.C.d
making meryl/args.C.d
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/meryl.o -c meryl/meryl.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/args.o -c meryl/args.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/binaryOp.o -c meryl/binaryOp.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build.o -c meryl/build.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build-threads.o -c meryl/build-threads.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/dump.o -c meryl/dump.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/estimate.o -c meryl/estimate.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/merge.o -c meryl/merge.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/unaryOp.o -c meryl/unaryOp.C
rm -f meryl/libmerylguts.a && ar ruvs meryl/libmerylguts.a meryl/args.o meryl/binaryOp.o meryl/build.o meryl/build-threads.o meryl/dump.o meryl/estimate.o meryl/merge.o meryl/unaryOp.o
ar: creating meryl/libmerylguts.a
a - meryl/args.o
a - meryl/binaryOp.o
a - meryl/build.o
a - meryl/build-threads.o
a - meryl/dump.o
a - meryl/estimate.o
a - meryl/merge.o
a - meryl/unaryOp.o
g++ -Os -w -pipe -march=core2 -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libmeryl/libmeryl.o -c ../kmer/libmeryl/libmeryl.C
rm -f ../kmer/libmeryl/libmeryl.a && ar ruvs ../kmer/libmeryl/libmeryl.a ../kmer/libmeryl/libmeryl.o
ar: creating ../kmer/libmeryl/libmeryl.a
a - ../kmer/libmeryl/libmeryl.o
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/fastaFile.o -c ../kmer/libseq/fastaFile.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/fastaStdin.o -c ../kmer/libseq/fastaStdin.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqStore.o -c ../kmer/libseq/seqStore.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/sffFile.o -c ../kmer/libseq/sffFile.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqFactory.o -c ../kmer/libseq/seqFactory.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqCache.o -c ../kmer/libseq/seqCache.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqStream.o -c ../kmer/libseq/seqStream.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/merStream.o -c ../kmer/libseq/merStream.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/test-seqCache.o -c ../kmer/libseq/test-seqCache.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/test-seqStream.o -c ../kmer/libseq/test-seqStream.C
g++ -Os -w -pipe -march=core2 -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/test-merStream.o -c ../kmer/libseq/test-merStream.C
rm -f ../kmer/libseq/libseq.a && ar ruvs ../kmer/libseq/libseq.a ../kmer/libseq/fastaFile.o ../kmer/libseq/fastaStdin.o ../kmer/libseq/seqStore.o ../kmer/libseq/sffFile.o ../kmer/libseq/seqFactory.o ../kmer/libseq/seqCache.o ../kmer/libseq/seqStream.o ../kmer/libseq/merStream.o ../kmer/libseq/test-seqCache.o ../kmer/libseq/test-seqStream.o ../kmer/libseq/test-merStream.o
ar: creating ../kmer/libseq/libseq.a
a - ../kmer/libseq/fastaFile.o
a - ../kmer/libseq/fastaStdin.o
a - ../kmer/libseq/seqStore.o
a - ../kmer/libseq/sffFile.o
a - ../kmer/libseq/seqFactory.o
a - ../kmer/libseq/seqCache.o
a - ../kmer/libseq/seqStream.o
a - ../kmer/libseq/merStream.o
a - ../kmer/libseq/test-seqCache.o
a - ../kmer/libseq/test-seqStream.o
a - ../kmer/libseq/test-merStream.o
cc -Os -w -pipe -march=core2 -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/alphabet.o -c ../kmer/libbio/alphabet.c
cc -Os -w -pipe -march=core2 -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/alphabet-acgtspace.o -c ../kmer/libbio/alphabet-acgtspace.c
cc -Os -w -pipe -march=core2 -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/alphabet-colorspace.o -c ../kmer/libbio/alphabet-colorspace.c
cc -Os -w -pipe -march=core2 -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/halign.o -c ../kmer/libbio/halign.c
cc -Os -w -pipe -march=core2 -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/reversecomplement.o -c ../kmer/libbio/reversecomplement.c
rm -f ../kmer/libbio/libbio.a && ar ruvs ../kmer/libbio/libbio.a ../kmer/libbio/alphabet.o ../kmer/libbio/alphabet-acgtspace.o ../kmer/libbio/alphabet-colorspace.o ../kmer/libbio/halign.o ../kmer/libbio/reversecomplement.o
ar: creating ../kmer/libbio/libbio.a
a - ../kmer/libbio/alphabet.o
a - ../kmer/libbio/alphabet-acgtspace.o
a - ../kmer/libbio/alphabet-colorspace.o
a - ../kmer/libbio/halign.o
a - ../kmer/libbio/reversecomplement.o
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/file.o -c ../kmer/libutil/file.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/md5.o -c ../kmer/libutil/md5.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/palloc.o -c ../kmer/libutil/palloc.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/qsort_mt.o -c ../kmer/libutil/qsort_mt.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/util.o -c ../kmer/libutil/util.c
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/bigQueue.o -c ../kmer/libutil/bigQueue.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/bitPackedArray.o -c ../kmer/libutil/bitPackedArray.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/bitPackedFile.o -c ../kmer/libutil/bitPackedFile.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/fibonacciNumbers.o -c ../kmer/libutil/fibonacciNumbers.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/intervalList.o -c ../kmer/libutil/intervalList.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/readBuffer.o -c ../kmer/libutil/readBuffer.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/recordFile.o -c ../kmer/libutil/recordFile.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/speedCounter.o -c ../kmer/libutil/speedCounter.C
g++ -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/sweatShop.o -c ../kmer/libutil/sweatShop.C
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/dict.o -c ../kmer/libutil/kazlib/dict.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/except.o -c ../kmer/libutil/kazlib/except.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/hash.o -c ../kmer/libutil/kazlib/hash.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/list.o -c ../kmer/libutil/kazlib/list.c
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/sfx.o -c ../kmer/libutil/kazlib/sfx.c
rm -f ../kmer/libutil/libutil.a && ar ruvs ../kmer/libutil/libutil.a ../kmer/libutil/file.o ../kmer/libutil/md5.o ../kmer/libutil/palloc.o ../kmer/libutil/qsort_mt.o ../kmer/libutil/util.o ../kmer/libutil/bigQueue.o ../kmer/libutil/bitPackedArray.o ../kmer/libutil/bitPackedFile.o ../kmer/libutil/fibonacciNumbers.o ../kmer/libutil/intervalList.o ../kmer/libutil/readBuffer.o ../kmer/libutil/recordFile.o ../kmer/libutil/speedCounter.o ../kmer/libutil/sweatShop.o ../kmer/libutil/mt19937ar/mt19937ar.o ../kmer/libutil/kazlib/dict.o ../kmer/libutil/kazlib/except.o ../kmer/libutil/kazlib/hash.o ../kmer/libutil/kazlib/list.o ../kmer/libutil/kazlib/sfx.o
ar: creating ../kmer/libutil/libutil.a
a - ../kmer/libutil/file.o
a - ../kmer/libutil/md5.o
a - ../kmer/libutil/palloc.o
a - ../kmer/libutil/qsort_mt.o
a - ../kmer/libutil/util.o
a - ../kmer/libutil/bigQueue.o
a - ../kmer/libutil/bitPackedArray.o
a - ../kmer/libutil/bitPackedFile.o
a - ../kmer/libutil/fibonacciNumbers.o
a - ../kmer/libutil/intervalList.o
a - ../kmer/libutil/readBuffer.o
a - ../kmer/libutil/recordFile.o
a - ../kmer/libutil/speedCounter.o
a - ../kmer/libutil/sweatShop.o
a - ../kmer/libutil/mt19937ar/mt19937ar.o
a - ../kmer/libutil/kazlib/dict.o
a - ../kmer/libutil/kazlib/except.o
a - ../kmer/libutil/kazlib/hash.o
a - ../kmer/libutil/kazlib/list.o
a - ../kmer/libutil/kazlib/sfx.o
g++ -L/usr/local/lib -o meryl/meryl meryl/meryl.o meryl/libmerylguts.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/asmMerQC.o -c meryl/asmMerQC.C
g++ -L/usr/local/lib -o meryl/asmMerQC meryl/asmMerQC.o ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers.o -c meryl/mapMers.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB-create-from-fasta.o -c ../kmer/libkmer/existDB-create-from-fasta.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB-create-from-meryl.o -c ../kmer/libkmer/existDB-create-from-meryl.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB-state.o -c ../kmer/libkmer/existDB-state.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB.o -c ../kmer/libkmer/existDB.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-access.o -c ../kmer/libkmer/positionDB-access.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-dump.o -c ../kmer/libkmer/positionDB-dump.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-file.o -c ../kmer/libkmer/positionDB-file.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-mismatch.o -c ../kmer/libkmer/positionDB-mismatch.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-sort.o -c ../kmer/libkmer/positionDB-sort.C
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB.o -c ../kmer/libkmer/positionDB.C
rm -f ../kmer/libkmer/libkmer.a && ar ruvs ../kmer/libkmer/libkmer.a ../kmer/libkmer/existDB-create-from-fasta.o ../kmer/libkmer/existDB-create-from-meryl.o ../kmer/libkmer/existDB-state.o ../kmer/libkmer/existDB.o ../kmer/libkmer/positionDB-access.o ../kmer/libkmer/positionDB-dump.o ../kmer/libkmer/positionDB-file.o ../kmer/libkmer/positionDB-mismatch.o ../kmer/libkmer/positionDB-sort.o ../kmer/libkmer/positionDB.o
ar: creating ../kmer/libkmer/libkmer.a
a - ../kmer/libkmer/existDB-create-from-fasta.o
a - ../kmer/libkmer/existDB-create-from-meryl.o
a - ../kmer/libkmer/existDB-state.o
a - ../kmer/libkmer/existDB.o
a - ../kmer/libkmer/positionDB-access.o
a - ../kmer/libkmer/positionDB-dump.o
a - ../kmer/libkmer/positionDB-file.o
a - ../kmer/libkmer/positionDB-mismatch.o
a - ../kmer/libkmer/positionDB-sort.o
a - ../kmer/libkmer/positionDB.o
g++ -L/usr/local/lib -o meryl/mapMers meryl/mapMers.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers-depth.o -c meryl/mapMers-depth.C
g++ -L/usr/local/lib -o meryl/mapMers-depth meryl/mapMers-depth.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/testPositionBias.o -c meryl/testPositionBias.C
g++ -L/usr/local/lib -o meryl/testPositionBias meryl/testPositionBias.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/maskMers.o -c meryl/maskMers.C
g++ -L/usr/local/lib -o meryl/maskMers meryl/maskMers.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/driver-existDB.o -c ../kmer/libkmer/driver-existDB.C
g++ -L/usr/local/lib -o ../kmer/libkmer/existDB ../kmer/libkmer/driver-existDB.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/driver-posDB.o -c ../kmer/libkmer/driver-posDB.C
g++ -L/usr/local/lib -o ../kmer/libkmer/positionDB ../kmer/libkmer/driver-posDB.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/percentCovered.o -c ../kmer/libkmer/percentCovered.C
g++ -L/usr/local/lib -o ../kmer/libkmer/percentCovered ../kmer/libkmer/percentCovered.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -Os -w -pipe -march=core2 -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/mask.o -c ../kmer/libkmer/mask.C
g++ -L/usr/local/lib -o ../kmer/libkmer/mask ../kmer/libkmer/mask.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -L/usr/local/lib -o ../kmer/libseq/test-seqCache ../kmer/libseq/test-seqCache.o ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -L/usr/local/lib -o ../kmer/libseq/test-seqStream ../kmer/libseq/test-seqStream.o ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
g++ -L/usr/local/lib -o ../kmer/libseq/test-merStream ../kmer/libseq/test-merStream.o ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2
cc -Os -w -pipe -march=core2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/mt19937ar/test.o -c ../kmer/libutil/mt19937ar/test.c
rm -f ../kmer/libutil/mt19937ar/libmt19937ar.a && ar ruvs ../kmer/libutil/mt19937ar/libmt19937ar.a ../kmer/libutil/mt19937ar/mt19937ar.o ../kmer/libutil/mt19937ar/test.o
ar: creating ../kmer/libutil/mt19937ar/libmt19937ar.a
a - ../kmer/libutil/mt19937ar/mt19937ar.o
a - ../kmer/libutil/mt19937ar/test.o
rm -f ../kmer/libutil/kazlib/libkaz.a && ar ruvs ../kmer/libutil/kazlib/libkaz.a ../kmer/libutil/kazlib/dict.o ../kmer/libutil/kazlib/except.o ../kmer/libutil/kazlib/hash.o ../kmer/libutil/kazlib/list.o ../kmer/libutil/kazlib/sfx.o
ar: creating ../kmer/libutil/kazlib/libkaz.a
a - ../kmer/libutil/kazlib/dict.o
a - ../kmer/libutil/kazlib/except.o
a - ../kmer/libutil/kazlib/hash.o
a - ../kmer/libutil/kazlib/list.o
a - ../kmer/libutil/kazlib/sfx.o
+ make install
+ cd CA/src
+ make LD_RUN_PATH=/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/lib
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_global.o AS_global.C
* Make Target is  objs
############################## AS_RUN ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragmentDepth.o fragmentDepth.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/markUniqueUnique.o markUniqueUnique.C
############################## AS_UTL ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Hash.o AS_UTL_Hash.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_heap.o AS_UTL_heap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Var.o AS_UTL_Var.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_rand.o AS_UTL_rand.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_interval.o AS_UTL_interval.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UnionFind_AS.o UnionFind_AS.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_skiplist.o AS_UTL_skiplist.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_alloc.o AS_UTL_alloc.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fileIO.o AS_UTL_fileIO.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_qsort_mt.o AS_UTL_qsort_mt.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fasta.o AS_UTL_fasta.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_UID.o AS_UTL_UID.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_reverseComplement.o AS_UTL_reverseComplement.C
############################## AS_UID ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/uidclient.o uidclient.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/uidserver.o uidserver.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SYS_UIDclient_LOCAL.o SYS_UIDclient_LOCAL.C
############################## AS_MSG ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg.o AS_MSG_pmesg.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg1.o AS_MSG_pmesg1.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg2.o AS_MSG_pmesg2.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/remove_fragment.o remove_fragment.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ExtractMessages.o ExtractMessages.C
############################## AS_PER ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_genericStore.o AS_PER_genericStore.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkLibrary.o AS_PER_gkLibrary.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore.o AS_PER_gkStore.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_IID.o AS_PER_gkStore_IID.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_PLC.o AS_PER_gkStore_PLC.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_UID.o AS_PER_gkStore_UID.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_clearRange.o AS_PER_gkStore_clearRange.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_fragments.o AS_PER_gkStore_fragments.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_load.o AS_PER_gkStore_load.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_partition.o AS_PER_gkStore_partition.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStream.o AS_PER_gkStream.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_encodeSequenceQuality.o AS_PER_encodeSequenceQuality.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_asmStore.o AS_PER_asmStore.C
############################## AS_GKP ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_main.o AS_GKP_main.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_bench.o AS_GKP_bench.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_buildPartition.o AS_GKP_buildPartition.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_checkLibrary.o AS_GKP_checkLibrary.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_checkFrag.o AS_GKP_checkFrag.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_checkLink.o AS_GKP_checkLink.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_checkPlace.o AS_GKP_checkPlace.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_dump.o AS_GKP_dump.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_edit.o AS_GKP_edit.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_errors.o AS_GKP_errors.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_GKP_illumina.o AS_GKP_illumina.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/sffToCA.o sffToCA.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fastqToCA.o fastqToCA.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fastqSample.o fastqSample.C
############################## AS_OBT ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/chimera.o chimera.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/consolidate.o consolidate.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/deduplicate.o deduplicate.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/initialTrim.o initialTrim.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/merge-trimming.o merge-trimming.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overlapMask.o overlapMask.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/trim.o trim.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/readOverlap.o readOverlap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/removeMateOverlap.o removeMateOverlap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/util++.o util++.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OBT_acceptableOverlap.o AS_OBT_acceptableOverlap.C
############################## AS_MER ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/meryl.o meryl.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/mercy.o mercy.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/mercy-regions.o mercy-regions.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overmerry.o overmerry.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/merTrim.o merTrim.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/estimate-mer-threshold.o estimate-mer-threshold.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MER_gkpStore_to_FastABase.o AS_MER_gkpStore_to_FastABase.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/kmer/Linux-amd64/include  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MER_gkpStoreChain.o AS_MER_gkpStoreChain.C
############################## AS_OVL ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_overlap.o AS_OVL_overlap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_driver.o AS_OVL_driver.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_overlap_ca.o AS_OVL_overlap_ca.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_driver_ca.o AS_OVL_driver_ca.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_delcher.o AS_OVL_delcher.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/OlapFromSeedsOVL.o OlapFromSeedsOVL.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/FragCorrectOVL.o FragCorrectOVL.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ShowCorrectsOVL.o ShowCorrectsOVL.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CorrectOlapsOVL.o CorrectOlapsOVL.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CatCorrectsOVL.o CatCorrectsOVL.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CatEratesOVL.o CatEratesOVL.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include -pthread  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -I/gpfs1/homes/pbayer/.linuxbrew/Cellar/masurca/2.3.2b/include/jellyfish-2.1.3   -std=c++0x -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SharedOVL.o SharedOVL.C
############################## AS_OVS ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlap.o AS_OVS_overlap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapFile.o AS_OVS_overlapFile.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStore.o AS_OVS_overlapStore.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStats.o AS_OVS_overlapStats.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overlapStore.o overlapStore.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overlapStore_build.o overlapStore_build.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overlapStore_merge.o overlapStore_merge.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overlapStore_dump.o overlapStore_dump.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overlapStore_erates.o overlapStore_erates.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/overlapStats.o overlapStats.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/convertOverlap.o convertOverlap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/filterOverlap.o filterOverlap.C
############################## AS_ALN ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_dpaligner.o AS_ALN_dpaligner.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_qvaligner.o AS_ALN_qvaligner.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_loverlapper.o AS_ALN_loverlapper.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_pieceOlap.o AS_ALN_pieceOlap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_forcns.o AS_ALN_forcns.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_local.o CA_ALN_local.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_overlap.o CA_ALN_overlap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_scafcomp.o CA_ALN_scafcomp.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_bruteforcedp.o AS_ALN_bruteforcedp.C
############################## AS_CGB ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_unitigger.o AS_CGB_unitigger.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_FGB_main.o AS_FGB_main.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_FGB_io.o AS_FGB_io.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_histo.o AS_CGB_histo.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_fga.o AS_CGB_fga.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_fgb.o AS_CGB_fgb.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_FGB_hanging_fragment.o AS_FGB_hanging_fragment.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_FGB_contained.o AS_FGB_contained.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_traversal.o AS_CGB_traversal.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_walk.o AS_CGB_walk.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_edgemate.o AS_CGB_edgemate.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_main.o AS_CGB_main.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_cgb.o AS_CGB_cgb.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_classify.o AS_CGB_classify.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_chimeras.o AS_CGB_chimeras.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_cga.o AS_CGB_cga.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_Bubble.o AS_CGB_Bubble.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_Bubble_Graph.o AS_CGB_Bubble_Graph.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_Bubble_VertexSet.o AS_CGB_Bubble_VertexSet.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_Bubble_dfs.o AS_CGB_Bubble_dfs.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_Bubble_Popper.o AS_CGB_Bubble_Popper.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_Bubble_PopperMethods.o AS_CGB_Bubble_PopperMethods.C
############################## AS_BOG ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/BuildUnitigs.o BuildUnitigs.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_BOG_BestOverlapGraph.o AS_BOG_BestOverlapGraph.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_BOG_ChunkGraph.o AS_BOG_ChunkGraph.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_BOG_MateChecker.o AS_BOG_MateChecker.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_BOG_Unitig.o AS_BOG_Unitig.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_BOG_UnitigGraph.o AS_BOG_UnitigGraph.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fixUnitigs.o fixUnitigs.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/scoreOverlaps.o scoreOverlaps.C
############################## AS_REZ ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ConsistencyChecksREZ.o ConsistencyChecksREZ.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapFillREZ.o GapFillREZ.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapWalkerREZ.o GapWalkerREZ.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/StatisticsREZ.o StatisticsREZ.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UpdateREZ.o UpdateREZ.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UtilsREZ.o UtilsREZ.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MicroHetREZ.o MicroHetREZ.C
############################## AS_CNS ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Array_CNS.o Array_CNS.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlign.o MultiAlign.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignPrint.o MultiAlignPrint.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignStore.o MultiAlignStore.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignment_CNS.o MultiAlignment_CNS.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/RefreshMANode.o RefreshMANode.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AbacusRefine.o AbacusRefine.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ApplyAlignment.o ApplyAlignment.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/BaseCall.o BaseCall.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GetAlignmentTrace.o GetAlignmentTrace.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeMultiAligns.o MergeMultiAligns.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeRefine.o MergeRefine.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignContig.o MultiAlignContig.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignUnitig.o MultiAlignUnitig.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/PrintAlignment.o PrintAlignment.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ReplaceEndUnitigInContig.o ReplaceEndUnitigInContig.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/utgcns.o utgcns.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ctgcns.o ctgcns.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/tigStore.o tigStore.C
############################## AS_LIN ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrf.o dpbtrf.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrs.o dpbtrs.c
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/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemm.o dgemm.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemv.o dgemv.c
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/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyr.o dsyr.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyrk.o dsyrk.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtbsv.o dtbsv.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtrsm.o dtrsm.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/idamax.o idamax.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ilaenv.o ilaenv.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/lsame.o lsame.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/xerbla.o xerbla.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_copy.o s_copy.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_cmp.o s_cmp.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ddot.o ddot.c
/gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dscal.o dscal.c
############################## AS_CGW ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGW_main.o AS_CGW_main.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/eCR.o eCR.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/eCR-examineGap.o eCR-examineGap.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/eCR-diagnostic.o eCR-diagnostic.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/eCR-partition.o eCR-partition.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/resolveSurrogates.o resolveSurrogates.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dumpCloneMiddles.o dumpCloneMiddles.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/exploreGapStructure.o exploreGapStructure.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/frgs2clones.o frgs2clones.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dumpSingletons.o dumpSingletons.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Globals_CGW.o Globals_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGW_EdgeDiagnostics.o AS_CGW_EdgeDiagnostics.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIEdgeT_CGW.o CIEdgeT_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Biconnected_CGW.o CIScaffoldT_Biconnected_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_CGW.o CIScaffoldT_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Cleanup_CGW.o CIScaffoldT_Cleanup_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Merge_CGW.o CIScaffoldT_Merge_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Celamy_CGW.o Celamy_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ChunkOverlap_CGW.o ChunkOverlap_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ContigT_CGW.o ContigT_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/DemoteUnitigsWithRBP_CGW.o DemoteUnitigsWithRBP_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragmentPlacement.o fragmentPlacement.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GraphCGW_T.o GraphCGW_T.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Input_CGW.o Input_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Instrument_CGW.o Instrument_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/InterleavedMerging.o InterleavedMerging.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/LeastSquaresGaps_CGW.o LeastSquaresGaps_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeEdges_CGW.o MergeEdges_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Output_CGW.o Output_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SEdgeT_CGW.o SEdgeT_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ScaffoldGraph_CGW.o ScaffoldGraph_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitChunks_CGW.o SplitChunks_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitScaffolds_CGW.o SplitScaffolds_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Stats_CGW.o Stats_CGW.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/TransitiveReduction_CGW.o TransitiveReduction_CGW.C
############################## AS_TER ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/terminator.o terminator.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/asmOutputFasta.o asmOutputFasta.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/asmOutputStatistics.o asmOutputStatistics.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragsInVars.o fragsInVars.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/buildPosMap.o buildPosMap.C
############################## AS_ENV ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/greedyFragmentTiling.o greedyFragmentTiling.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/chimChe.o chimChe.C
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/metagenomics_ovl_analyses.o metagenomics_ovl_analyses.C
############################## AS_ARD ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX   -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/loadAssembly.o loadAssembly.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX   -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/getAssembly.o getAssembly.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX   -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Sybase.o Sybase.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX   -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ARD_database.o AS_ARD_database.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX   -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/DBTextOutput.o DBTextOutput.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX   -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/BCPOutput.o BCPOutput.cc
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX   -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SQLOutput.o SQLOutput.cc
############################## AS_REF ##############################
/gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -isystem/gpfs1/homes/pbayer/.linuxbrew/include  -Os -w -pipe -march=core2 -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -Wall -Wno-write-strings -Wno-unused -Wno-char-subscripts -O2 -m64 -DX86_GCC_LINUX  -c  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_RUN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UTL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_UID  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MSG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_PER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_GKP  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OBT  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_MER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVL  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_OVS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ALN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGB  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_BOG  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REZ  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CNS  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_LIN  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_CGW  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_TER  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ENV  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_ARD  -I/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/src/AS_REF -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/buildRefContigs.o buildRefContigs.C
###################  libCA.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a AS_global.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a
a - AS_global.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a AS_global.o
r - AS_global.o
* Make Target is  libs
############################## AS_RUN ##############################
make[1]: Nothing to be done for `libs'.
############################## AS_UTL ##############################
###################  libAS_UTL.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_UTL.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Hash.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_heap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Var.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_rand.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_interval.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UnionFind_AS.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_skiplist.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_alloc.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fileIO.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_qsort_mt.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fasta.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_UID.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_reverseComplement.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_UTL.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Hash.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_heap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Var.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_rand.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_interval.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UnionFind_AS.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_skiplist.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_alloc.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fileIO.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_qsort_mt.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fasta.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_UID.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_reverseComplement.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Hash.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_heap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Var.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_rand.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_interval.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UnionFind_AS.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_skiplist.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_alloc.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fileIO.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_qsort_mt.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fasta.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_UID.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_reverseComplement.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Hash.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_heap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_Var.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_rand.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_interval.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UnionFind_AS.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_skiplist.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_alloc.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fileIO.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_qsort_mt.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_fasta.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_UID.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_UTL_reverseComplement.o
############################## AS_UID ##############################
###################  libAS_UID.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_UID.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SYS_UIDclient_LOCAL.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_UID.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SYS_UIDclient_LOCAL.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SYS_UIDclient_LOCAL.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SYS_UIDclient_LOCAL.o
############################## AS_MSG ##############################
###################  libAS_MSG.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_MSG.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg1.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg2.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_MSG.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg1.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg2.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg1.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg2.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg1.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_MSG_pmesg2.o
############################## AS_PER ##############################
###################  libAS_PER.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_PER.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_genericStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkLibrary.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_IID.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_PLC.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_UID.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_clearRange.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_fragments.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_load.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_partition.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStream.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_encodeSequenceQuality.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_asmStore.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_PER.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_genericStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkLibrary.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_IID.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_PLC.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_UID.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_clearRange.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_fragments.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_load.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_partition.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStream.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_encodeSequenceQuality.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_asmStore.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_genericStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkLibrary.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_IID.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_PLC.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_UID.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_clearRange.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_fragments.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_load.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_partition.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStream.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_encodeSequenceQuality.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_asmStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_genericStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkLibrary.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_IID.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_PLC.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_UID.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_clearRange.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_fragments.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_load.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStore_partition.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_gkStream.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_encodeSequenceQuality.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_PER_asmStore.o
############################## AS_GKP ##############################
make[1]: Nothing to be done for `libs'.
############################## AS_OBT ##############################
###################  libAS_OBT.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_OBT.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OBT_acceptableOverlap.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_OBT.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OBT_acceptableOverlap.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OBT_acceptableOverlap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OBT_acceptableOverlap.o
############################## AS_MER ##############################
make[1]: Nothing to be done for `libs'.
############################## AS_OVL ##############################
###################  libAS_OVL.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_OVL.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SharedOVL.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_delcher.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_OVL.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SharedOVL.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_delcher.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SharedOVL.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_delcher.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SharedOVL.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVL_delcher.o
############################## AS_OVS ##############################
###################  libAS_OVS.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_OVS.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapFile.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStats.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_OVS.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapFile.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStats.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapFile.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStats.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapFile.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_OVS_overlapStats.o
############################## AS_ALN ##############################
###################  libAS_ALN.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_ALN.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_dpaligner.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_qvaligner.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_loverlapper.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_pieceOlap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_forcns.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_local.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_overlap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_scafcomp.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_bruteforcedp.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_ALN.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_dpaligner.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_qvaligner.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_loverlapper.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_pieceOlap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_forcns.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_local.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_overlap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_scafcomp.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_bruteforcedp.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_dpaligner.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_qvaligner.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_loverlapper.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_pieceOlap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_forcns.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_local.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_overlap.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_scafcomp.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_bruteforcedp.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_dpaligner.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_qvaligner.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_loverlapper.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_pieceOlap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_forcns.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_local.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_overlap.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CA_ALN_scafcomp.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_ALN_bruteforcedp.o
############################## AS_CGB ##############################
###################  libAS_CGB.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_CGB.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_histo.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_CGB.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_histo.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_histo.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGB_histo.o
############################## AS_BOG ##############################
make[1]: Nothing to be done for `libs'.
############################## AS_REZ ##############################
###################  libAS_REZ.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_REZ.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ConsistencyChecksREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapFillREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapWalkerREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/StatisticsREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UpdateREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UtilsREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MicroHetREZ.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_REZ.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ConsistencyChecksREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapFillREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapWalkerREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/StatisticsREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UpdateREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UtilsREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MicroHetREZ.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ConsistencyChecksREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapFillREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapWalkerREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/StatisticsREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UpdateREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UtilsREZ.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MicroHetREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ConsistencyChecksREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapFillREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GapWalkerREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/StatisticsREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UpdateREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/UtilsREZ.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MicroHetREZ.o
############################## AS_CNS ##############################
###################  libAS_CNS.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_CNS.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Array_CNS.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlign.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignPrint.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignment_CNS.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/RefreshMANode.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AbacusRefine.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ApplyAlignment.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/BaseCall.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GetAlignmentTrace.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeMultiAligns.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeRefine.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignContig.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignUnitig.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/PrintAlignment.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ReplaceEndUnitigInContig.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_CNS.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Array_CNS.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlign.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignPrint.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignment_CNS.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/RefreshMANode.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AbacusRefine.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ApplyAlignment.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/BaseCall.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GetAlignmentTrace.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeMultiAligns.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeRefine.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignContig.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignUnitig.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/PrintAlignment.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ReplaceEndUnitigInContig.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Array_CNS.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlign.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignPrint.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignStore.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignment_CNS.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/RefreshMANode.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AbacusRefine.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ApplyAlignment.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/BaseCall.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GetAlignmentTrace.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeMultiAligns.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeRefine.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignContig.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignUnitig.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/PrintAlignment.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ReplaceEndUnitigInContig.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Array_CNS.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlign.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignPrint.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignStore.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignment_CNS.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/RefreshMANode.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AbacusRefine.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ApplyAlignment.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/BaseCall.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GetAlignmentTrace.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeMultiAligns.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeRefine.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignContig.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MultiAlignUnitig.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/PrintAlignment.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ReplaceEndUnitigInContig.o
############################## AS_LIN ##############################
###################  libAS_LIN.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_LIN.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrf.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrs.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/daxpy.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemm.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemv.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dlamch.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtf2.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpotf2.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dptrfs.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpttrs.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyr.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyrk.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtbsv.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtrsm.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/idamax.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ilaenv.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/lsame.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/xerbla.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_copy.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_cmp.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ddot.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dscal.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_LIN.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrf.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrs.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/daxpy.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemm.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemv.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dlamch.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtf2.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpotf2.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dptrfs.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpttrs.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyr.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyrk.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtbsv.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtrsm.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/idamax.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ilaenv.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/lsame.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/xerbla.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_copy.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_cmp.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ddot.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dscal.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrf.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrs.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/daxpy.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemm.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemv.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dlamch.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtf2.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpotf2.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dptrfs.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpttrs.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyr.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyrk.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtbsv.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtrsm.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/idamax.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ilaenv.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/lsame.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/xerbla.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_copy.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_cmp.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ddot.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dscal.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrf.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtrs.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/daxpy.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemm.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dgemv.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dlamch.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpbtf2.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpotf2.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dptrfs.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dpttrs.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyr.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dsyrk.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtbsv.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dtrsm.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/idamax.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ilaenv.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/lsame.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/xerbla.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_copy.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/s_cmp.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ddot.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/dscal.o
############################## AS_CGW ##############################
###################  libAS_CGW.a #####################
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_CGW.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Globals_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGW_EdgeDiagnostics.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIEdgeT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Biconnected_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Cleanup_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Merge_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Celamy_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ChunkOverlap_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ContigT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/DemoteUnitigsWithRBP_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragmentPlacement.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GraphCGW_T.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Input_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Instrument_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/InterleavedMerging.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/LeastSquaresGaps_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeEdges_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Output_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SEdgeT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ScaffoldGraph_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitChunks_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitScaffolds_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Stats_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/TransitiveReduction_CGW.o
ar: creating /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libAS_CGW.a
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Globals_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGW_EdgeDiagnostics.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIEdgeT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Biconnected_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Cleanup_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Merge_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Celamy_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ChunkOverlap_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ContigT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/DemoteUnitigsWithRBP_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragmentPlacement.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GraphCGW_T.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Input_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Instrument_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/InterleavedMerging.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/LeastSquaresGaps_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeEdges_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Output_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SEdgeT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ScaffoldGraph_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitChunks_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitScaffolds_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Stats_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/TransitiveReduction_CGW.o
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
	  ar rvs /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Globals_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGW_EdgeDiagnostics.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIEdgeT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Biconnected_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Cleanup_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Merge_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Celamy_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ChunkOverlap_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ContigT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/DemoteUnitigsWithRBP_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragmentPlacement.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GraphCGW_T.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Input_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Instrument_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/InterleavedMerging.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/LeastSquaresGaps_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeEdges_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Output_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SEdgeT_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ScaffoldGraph_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitChunks_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitScaffolds_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Stats_CGW.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/TransitiveReduction_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Globals_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/AS_CGW_EdgeDiagnostics.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIEdgeT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Biconnected_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Cleanup_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/CIScaffoldT_Merge_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Celamy_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ChunkOverlap_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ContigT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/DemoteUnitigsWithRBP_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragmentPlacement.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/GraphCGW_T.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Input_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Instrument_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/InterleavedMerging.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/LeastSquaresGaps_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/MergeEdges_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Output_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SEdgeT_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/ScaffoldGraph_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitChunks_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/SplitScaffolds_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/Stats_CGW.o
a - /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/TransitiveReduction_CGW.o
############################## AS_TER ##############################
make[1]: Nothing to be done for `libs'.
############################## AS_ENV ##############################
make[1]: Nothing to be done for `libs'.
############################## AS_ARD ##############################
make[1]: Nothing to be done for `libs'.
############################## AS_REF ##############################
make[1]: Nothing to be done for `libs'.
* Make Target is  progs
############################## AS_RUN ##############################
++++++++++++++++++++  fragmentDepth ++++++++++++++++++++++
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
          /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/bin/fragmentDepth /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/fragmentDepth.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a   -L/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib  -L/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib  -L/usr/lib64  -L/usr/X11R6/lib64 -L/gpfs1/homes/pbayer/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs1/homes/pbayer/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs1/homes/pbayer/.linuxbrew/lib -pthread -lm -Wl,-O1 -pthread -lm -Wl,-O1
++++++++++++++++++++  markUniqueUnique ++++++++++++++++++++++
cd /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj; \
          /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 -o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/bin/markUniqueUnique /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/obj/markUniqueUnique.o /tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib/libCA.a   -L/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib  -L/tmp/masurca20160229-26095-1pbb98n/MaSuRCA-2.3.2b/CA/Linux-amd64/lib  -L/usr/lib64  -L/usr/X11R6/lib64 -L/gpfs1/homes/pbayer/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs1/homes/pbayer/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs1/homes/pbayer/.linuxbrew/lib -pthread -lm -Wl,-O1 -pthread -lm -Wl,-O1
/gpfs1/homes/pbayer/.linuxbrew/lib/libstdc++.so: undefined reference to `__cxa_thread_atexit_impl@GLIBC_2.18'
/gpfs1/homes/pbayer/.linuxbrew/lib/libstdc++.so: undefined reference to `clock_gettime@GLIBC_2.17'
collect2: error: ld returned 1 exit status
/gpfs1/homes/pbayer/.linuxbrew/lib/libstdc++.so: undefined reference to `__cxa_thread_atexit_impl@GLIBC_2.18'
/gpfs1/homes/pbayer/.linuxbrew/lib/libstdc++.so: undefined reference to `clock_gettime@GLIBC_2.17'
collect2: error: ld returned 1 exit status
make[1]: *** [markUniqueUnique] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: *** [fragmentDepth] Error 1
make: *** [progs] Error 1

HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Linuxbrew/linuxbrew.git
HEAD: 4a4df9a4a4708e9a0ff2794802f270f86775a091
Last commit: 2 hours ago
HOMEBREW_PREFIX: /gpfs1/homes/pbayer/.linuxbrew
HOMEBREW_REPOSITORY: /gpfs1/homes/pbayer/.linuxbrew
HOMEBREW_CELLAR: /gpfs1/homes/pbayer/.linuxbrew/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
CPU: 24-core 64-bit haswell
Kernel: Linux 2.6.32-431.11.2.el6.x86_64 x86_64 GNU/Linux
OS: CentOS release 6.5 (Final)
Codename: Final
OS glibc: 2.12
OS gcc: 4.4.7
Linuxbrew glibc: 2.19
Linuxbrew gcc: 5.3.0
Clang: N/A
X11: 2.7.8 => /usr
System Ruby: 2.3.0 => /home/pbayer/.rbenv/versions/2.3.0/bin/ruby
Perl: /home/pbayer/localperl/bin/perl => /gpfs1/homes/pbayer/localperl/bin/perl
Python: /home/pbayer/localpython/bin/python => /gpfs1/homes/pbayer/localpython/bin/python2.7
Ruby: /home/pbayer/.rbenv/versions/2.3.0/bin/ruby => /gpfs1/homes/pbayer/.rbenv/versions/2.3.0/bin/ruby
Java: 1.8.0_74

CC: /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5 => /gpfs1/homes/pbayer/.linuxbrew/Cellar/gcc/5.3.0/bin/gcc-5
CXX: /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5 => /gpfs1/homes/pbayer/.linuxbrew/Cellar/gcc/5.3.0/bin/g++-5
OBJC: /gpfs1/homes/pbayer/.linuxbrew/bin/gcc-5
OBJCXX: /gpfs1/homes/pbayer/.linuxbrew/bin/g++-5
CFLAGS: -Os -w -pipe -march=core2
CXXFLAGS: -Os -w -pipe -march=core2
CPPFLAGS: -isystem/gpfs1/homes/pbayer/.linuxbrew/include
LDFLAGS: -L/gpfs1/homes/pbayer/.linuxbrew/lib -Wl,--dynamic-linker=/gpfs1/homes/pbayer/.linuxbrew/lib/ld.so -Wl,-rpath,/gpfs1/homes/pbayer/.linuxbrew/lib
CMAKE_PREFIX_PATH: /gpfs1/homes/pbayer/.linuxbrew
PKG_CONFIG_LIBDIR: /gpfs1/homes/pbayer/.linuxbrew/lib/pkgconfig
PATH: /home/pbayer/.rbenv/versions/2.3.0/bin:/gpfs1/homes/pbayer/.rbenv/libexec:/home/pbayer/.rbenv/plugins/ruby-build/bin:/gpfs1/homes/pbayer/.linuxbrew/bin:/gpfs1/homes/pbayer/.linuxbrew/sbin:/home/pbayer/.rbenv/shims:/90days/uqccha18/groupEnv/flashlite/scripts:/90days/uqccha18/groupEnv/flashlite/apps/bin:/90days/uqccha18/groupEnv/flashlite/bin:.:/home/pbayer/.linuxbrew/bin:/home/pbayer/.rbenv/bin:/home/pbayer/jre1.8.0_74/bin:/home/pbayer/localpython/bin:/home/pbayer/localperl/bin:/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/opt/torque-rcc/default/bin:/opt/torque-rcc/default/sbin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/bio/ncbi/bin:/opt/bio/mpiblast/bin:/opt/bio/EMBOSS/bin:/opt/bio/clustalw/bin:/opt/bio/tcoffee/bin:/opt/bio/hmmer/bin:/opt/bio/phylip/exe:/opt/bio/mrbayes:/opt/bio/fasta:/opt/bio/glimmer/bin:/opt/bio/glimmer/scripts:/opt/bio/gromacs/bin:/opt/bio/gmap/bin:/opt/bio/tigr/bin:/opt/bio/autodocksuite/bin:/opt/bio/wgs/bin:/opt/ganglia/bin:/opt/ganglia/sbin:/opt/ibutils/bin:/usr/java/latest/bin:/opt/maui-rcc/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/home/pbayer/bin:/gpfs1/homes/pbayer/.linuxbrew/Library/ENV/scm