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biomartr Linux test
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| install.packages("BiocManager") | |
| BiocManager::install("Biostrings", version = "3.8") | |
| BiocManager::install("biomaRt", version = "3.8") | |
| install.packages("biomartr", dependencies = TRUE) | |
| library(biomartr) | |
| getGenome(db = "genbank", organism = "GCA_003138775.1", reference = FALSE) |
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| # Tested on AWS EC t2.xlarge instance with Ubuntu 18.4 | |
| # see https://www.digitalocean.com/community/tutorials/how-to-install-r-on-ubuntu-18-04 | |
| sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 | |
| sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/' | |
| sudo apt update | |
| sudo apt install r-base curl libcurl4-gnutls-dev libssl-dev zlib1g-dev libxml2-dev |
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