Philipp Münch philippmuench

Staff Scientist Helmholtz Centre for Infection Research & PostDoc Harvard T.H. Chan School of Public Health

philippmuench / LLaMA.R

Created October 15, 2024 23:03 — forked from t-kalinowski/LLaMA.R

LLaMA implemented in R Tensorflow and Keras

	## Setup
	Sys.setenv(CUDA_VISIBLE_DEVICES='')
	options(tensorflow.extract.warn_tensors_passed_asis = FALSE)

	library(dplyr, warn.conflicts = FALSE)
	library(purrr)
	library(glue)
	library(envir)

	library(tensorflow)

philippmuench / multiplicative_lstm.R

Created June 18, 2019 09:13 — forked from jjallaire/multiplicative_lstm.R

Custom Multiplicative LSTM Layer for R Keras



	library(keras)
	library(reticulate)

	layer_multiplicative_lstm <-function(
	object, units, activation = "tanh", recurrent_activation = "hard_sigmoid", use_bias = TRUE,
	return_sequences = FALSE, return_state = FALSE, go_backwards = FALSE, stateful = FALSE, unroll = FALSE,
	kernel_initializer = "glorot_uniform", recurrent_initializer = "orthogonal", bias_initializer = "zeros",
	unit_forget_bias = TRUE, kernel_regularizer = NULL, recurrent_regularizer = NULL, bias_regularizer = NULL,

philippmuench / VarScan2_format_converter.py

Created February 24, 2017 12:21 — forked from PoisonAlien/VarScan2_format_converter.py

Takes output file generated by VarScan2 somatic programme and converts the formats.

	__author__ = "Anand M"

	'''
	Takes output file generated by VarScan2 somatic programme and converts the formats.
	'''

	import argparse, math, re

	parser = argparse.ArgumentParser(
	description="Converts VarScan2 somatic vcf to native format and vice-versa.\nInput is automatically detected")