Created
January 21, 2013 15:54
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Example script for generating sequence alignment files (.nib) using faToNib submitted to a Grid Engine cluster
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| #!/bin/sh | |
| # | |
| # make_nibs.sh | |
| # | |
| chroms=`ls chr*.fa` | |
| for chrom in $chroms; do | |
| echo $chrom | |
| nib=${chrom%.*}.nib | |
| qsub -cwd -V -b y faToNib $chrom $nib | |
| done |
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