Created
June 10, 2020 05:27
-
-
Save poeli/d54e66d39aa9b8c6a77628b1e6705277 to your computer and use it in GitHub Desktop.
remove sequences from FASTA in pattern file
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/usr/bin/bash | |
| awk '{ if ((NR>1)&&($0~/^>/)) { printf("\n%s", $0); } else if (NR==1) { printf("%s", $0); } else { printf("\t%s", $0); } }' \ | |
| | grep -vwf $1 - \ | |
| | tr "\t" "\n" |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment