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December 10, 2015 19:59
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matlab parallel pool failure
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| [d86r845@hyalite ~]$ ssh compute002 | |
| Last login: Fri Dec 4 10:27:28 2015 from hyalite.global.cluster | |
| [d86r845@compute002 ~]$ module load matlab | |
| [d86r845@compute002 ~]$ matlab -nodisplay -nosplash | |
| < M A T L A B (R) > | |
| Copyright 1984-2015 The MathWorks, Inc. | |
| R2015a (8.5.0.197613) 64-bit (glnxa64) | |
| February 12, 2015 | |
| To get started, type one of these: helpwin, helpdesk, or demo. | |
| For product information, visit www.mathworks.com. | |
| Academic License | |
| >> parpool | |
| Starting parallel pool (parpool) using the 'local' profile ... | |
| Error using parpool (line 103) | |
| Failed to start a parallel pool. (For information in addition to the causing error, validate the profile 'local' in the Cluster Profile Manager.) | |
| Caused by: | |
| Error using parallel.internal.pool.InteractiveClient>iThrowWithCause (line 667) | |
| Failed to start pool. | |
| Error using parallel.Job/createTask (line 277) | |
| Permission denied | |
| >> c=parcluster('local') | |
| c = | |
| Local Cluster | |
| Properties: | |
| Profile: local | |
| Modified: false | |
| Host: compute002 | |
| NumWorkers: 16 | |
| JobStorageLocation: /mnt/lustrefs/scratch/pol.llovet | |
| RequiresMathWorksHostedLicensing: false | |
| Associated Jobs: | |
| Number Pending: 0 | |
| Number Queued: 0 | |
| Number Running: 0 | |
| Number Finished: 0 | |
| >> c.parpool | |
| Starting parallel pool (parpool) using the 'local' profile ... | |
| Error using parallel.Cluster/parpool (line 81) | |
| Failed to start a parallel pool. (For information in addition to the causing error, validate the profile 'local' in the Cluster Profile Manager.) | |
| Caused by: | |
| Error using parallel.internal.pool.InteractiveClient>iThrowWithCause (line 667) | |
| Failed to start pool. | |
| Error using parallel.Job/createTask (line 277) | |
| Permission denied | |
| >> c.JobStorageLocation('/dev/shm') | |
| Index exceeds matrix dimensions. | |
| >> c.JobStorageLocation='/dev/shm' | |
| c = | |
| Local Cluster | |
| Properties: | |
| Profile: local | |
| Modified: true | |
| Host: compute002 | |
| NumWorkers: 16 | |
| JobStorageLocation: /dev/shm | |
| RequiresMathWorksHostedLicensing: false | |
| Associated Jobs: | |
| Number Pending: 0 | |
| Number Queued: 0 | |
| Number Running: 0 | |
| Number Finished: 0 | |
| >> c.parpool | |
| Starting parallel pool (parpool) using the 'local' profile ... Warning: Unable to calculate the dependencies of the files: | |
| /cm/shared/apps/matlab/R2015a/toolbox/distcomp/@distcomp/nop.m | |
| because: | |
| Permission denied | |
| > In parallel.internal.apishared.AttachedFiles.calculateAttachedFiles (line 235) | |
| In parallel.Task/hCalculateDependentFiles (line 564) | |
| In parallel.Task/hCalculateAndCacheDependentFiles (line 583) | |
| In parallel.Job>@(t)t.hCalculateAndCacheDependentFiles(taskFunctionCache) (line 692) | |
| In parallel.Job/attachRequiredFiles (line 691) | |
| In parallel.Job/submit (line 304) | |
| In parallel.internal.pool.InteractiveClient/start (line 330) | |
| In parallel.Pool>iStartClient (line 547) | |
| In parallel.Pool.hBuildPool (line 439) | |
| In parallel.internal.pool.doParpool (line 15) | |
| In parallel.Cluster/parpool (line 67) | |
| Error using parallel.Cluster/parpool (line 81) | |
| Failed to start a parallel pool. (For information in addition to the causing error, validate the profile 'local' in the Cluster Profile Manager.) | |
| Caused by: | |
| Error using parallel.internal.pool.InteractiveClient>iThrowWithCause (line 667) | |
| Failed to start pool. | |
| Error using parallel.internal.apishared.AttachedFiles>iMkDirOrError (line 545) | |
| Could not create a temporary directory for the attached file archive. | |
| Permission denied | |
| >> c.JobStorageLocation='/home/pol.llovet' | |
| c = | |
| Local Cluster | |
| Properties: | |
| Profile: local | |
| Modified: true | |
| Host: compute002 | |
| NumWorkers: 16 | |
| JobStorageLocation: /home/pol.llovet | |
| RequiresMathWorksHostedLicensing: false | |
| Associated Jobs: | |
| Number Pending: 0 | |
| Number Queued: 0 | |
| Number Running: 0 | |
| Number Finished: 0 | |
| >> c.parpool | |
| Starting parallel pool (parpool) using the 'local' profile ... Warning: Unable to calculate the dependencies of the files: | |
| /cm/shared/apps/matlab/R2015a/toolbox/distcomp/@distcomp/nop.m | |
| because: | |
| Permission denied | |
| > In parallel.internal.apishared.AttachedFiles.calculateAttachedFiles (line 235) | |
| In parallel.Task/hCalculateDependentFiles (line 564) | |
| In parallel.Task/hCalculateAndCacheDependentFiles (line 583) | |
| In parallel.Job>@(t)t.hCalculateAndCacheDependentFiles(taskFunctionCache) (line 692) | |
| In parallel.Job/attachRequiredFiles (line 691) | |
| In parallel.Job/submit (line 304) | |
| In parallel.internal.pool.InteractiveClient/start (line 330) | |
| In parallel.Pool>iStartClient (line 547) | |
| In parallel.Pool.hBuildPool (line 439) | |
| In parallel.internal.pool.doParpool (line 15) | |
| In parallel.Cluster/parpool (line 67) | |
| Error using parallel.Cluster/parpool (line 81) | |
| Failed to start a parallel pool. (For information in addition to the causing error, validate the profile 'local' in the Cluster Profile Manager.) | |
| Caused by: | |
| Error using parallel.internal.pool.InteractiveClient>iThrowWithCause (line 667) | |
| Failed to start pool. | |
| Error using parallel.internal.apishared.AttachedFiles>iMkDirOrError (line 545) | |
| Could not create a temporary directory for the attached file archive. | |
| Permission denied | |
| >> c.JobStorageLocation='/tmp' | |
| c = | |
| Local Cluster | |
| Properties: | |
| Profile: local | |
| Modified: true | |
| Host: compute002 | |
| NumWorkers: 16 | |
| JobStorageLocation: /tmp | |
| RequiresMathWorksHostedLicensing: false | |
| Associated Jobs: | |
| Number Pending: 0 | |
| Number Queued: 0 | |
| Number Running: 0 | |
| Number Finished: 0 | |
| >> c.parpool | |
| Starting parallel pool (parpool) using the 'local' profile ... Warning: Unable to calculate the dependencies of the files: | |
| /cm/shared/apps/matlab/R2015a/toolbox/distcomp/@distcomp/nop.m | |
| because: | |
| Permission denied | |
| > In parallel.internal.apishared.AttachedFiles.calculateAttachedFiles (line 235) | |
| In parallel.Task/hCalculateDependentFiles (line 564) | |
| In parallel.Task/hCalculateAndCacheDependentFiles (line 583) | |
| In parallel.Job>@(t)t.hCalculateAndCacheDependentFiles(taskFunctionCache) (line 692) | |
| In parallel.Job/attachRequiredFiles (line 691) | |
| In parallel.Job/submit (line 304) | |
| In parallel.internal.pool.InteractiveClient/start (line 330) | |
| In parallel.Pool>iStartClient (line 547) | |
| In parallel.Pool.hBuildPool (line 439) | |
| In parallel.internal.pool.doParpool (line 15) | |
| In parallel.Cluster/parpool (line 67) | |
| Error using parallel.Cluster/parpool (line 81) | |
| Failed to start a parallel pool. (For information in addition to the causing error, validate the profile 'local' in the Cluster Profile Manager.) | |
| Caused by: | |
| Error using parallel.internal.pool.InteractiveClient>iThrowWithCause (line 667) | |
| Failed to start pool. | |
| Error using parallel.internal.apishared.AttachedFiles>iMkDirOrError (line 545) | |
| Could not create a temporary directory for the attached file archive. | |
| Permission denied | |
| >> quit | |
| [d86r845@compute002 ~]$ ls -lah /cm/shared/apps/matlab/R2015a/toolbox/distcomp/@distcomp/nop.m | |
| -r--r--r-- 1 root root 333 Feb 26 2013 /cm/shared/apps/matlab/R2015a/toolbox/distcomp/@distcomp/nop.m | |
| [d86r845@compute002 ~]$ ls -lah /dev/shm | |
| total 4.0K | |
| drwxrwxrwt 2 root root 60 Dec 10 12:56 . | |
| drwxr-xr-x 19 root root 88K Nov 6 04:05 .. | |
| -rw-r--r-- 1 d86r845 users 862 Dec 10 12:56 matlab_metadata.mat | |
| [d8 |
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