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prudhomm/atlas-h0.1-Re100-np32-petscO1

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Log files for Navier-Stokes
Raw
atlas-h0.1-Re100-np32-petscO1
Delaunizing vertices...
Delaunay seconds: 0.061829
Creating surface mesh ...
Surface mesh seconds: 0.015536
Recovering boundaries...
Boundary recovery seconds: 0.020214
Removing exterior tetrahedra ...
Exterior tets removal seconds: 0.003304
Recovering Delaunayness...
Delaunay recovery seconds: 0.019243
Optimizing mesh...
Optimization seconds: 0.023479
Writing nodes.
Writing elements.
Writing faces.
Writing edges.
Output seconds: 0.009509
Total running seconds: 0.153991
Statistics:
Input points: 4523
Input facets: 9042
Input segments: 13563
Input holes: 0
Input regions: 0
Mesh points: 4527
Mesh tetrahedra: 13864
Mesh faces: 32249
Mesh edges: 22911
Mesh faces on facets: 9042
Mesh edges on segments: 13563
Steiner points inside domain: 4
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Re FunctionSpace Velocity Pressure
100 239166 228771 10395
[blockns]
- cd: 1
- pcd: 1
- pcd.inflow: Robin
- pcd.outflow: Dirichlet
- pcd.order: 1
field increment
- type Dirichlet
. boundary inlet expr : {0,0,0}
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
field velocity
- type Dirichlet
. boundary inlet expr : {3*16*y*(1-y)*z*(1-z)/2,0,0}:y:z
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
[ - Setting up Precondition Blockns...] Time : 0.969412s
0 stokes KSP Residual norm 1.731652e+01
1 stokes KSP Residual norm 4.143346e-02
2 stokes KSP Residual norm 1.849656e-02
3 stokes KSP Residual norm 1.280794e-02
4 stokes KSP Residual norm 9.308202e-03
5 stokes KSP Residual norm 7.739893e-03
6 stokes KSP Residual norm 6.679443e-03
7 stokes KSP Residual norm 5.989041e-03
8 stokes KSP Residual norm 5.550875e-03
9 stokes KSP Residual norm 4.962135e-03
10 stokes KSP Residual norm 4.670159e-03
11 stokes KSP Residual norm 4.172581e-03
12 stokes KSP Residual norm 3.812752e-03
13 stokes KSP Residual norm 3.530015e-03
14 stokes KSP Residual norm 3.232717e-03
15 stokes KSP Residual norm 2.972584e-03
16 stokes KSP Residual norm 2.675248e-03
17 stokes KSP Residual norm 2.380995e-03
18 stokes KSP Residual norm 1.934142e-03
19 stokes KSP Residual norm 1.541518e-03
20 stokes KSP Residual norm 1.182375e-03
21 stokes KSP Residual norm 7.290648e-04
22 stokes KSP Residual norm 4.499141e-04
23 stokes KSP Residual norm 2.488218e-04
24 stokes KSP Residual norm 1.521521e-04
25 stokes KSP Residual norm 8.309264e-05
26 stokes KSP Residual norm 4.489339e-05
27 stokes KSP Residual norm 2.531635e-05
28 stokes KSP Residual norm 1.333021e-05
[ - Solving Stokes...] Time : 3.093291e+02s
[ - Exporting Stokes results...] Time : 8.792219e-01s
[ - Picard:: Assemble nonlinear terms ...] Time : 1.494117e+01s
[ - Picard:: Assemble BC ...] Time : 7.215194e+00s
Picard:: non linear iteration 0
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 2.429535e-02
2 picard KSP Residual norm 1.891741e-02
3 picard KSP Residual norm 1.193047e-02
4 picard KSP Residual norm 8.535324e-03
5 picard KSP Residual norm 5.633448e-03
6 picard KSP Residual norm 4.015918e-03
7 picard KSP Residual norm 2.316518e-03
8 picard KSP Residual norm 1.385908e-03
9 picard KSP Residual norm 6.556229e-04
10 picard KSP Residual norm 3.168902e-04
11 picard KSP Residual norm 1.433478e-04
12 picard KSP Residual norm 7.236214e-05
13 picard KSP Residual norm 4.365398e-05
14 picard KSP Residual norm 2.532229e-05
15 picard KSP Residual norm 1.507432e-05
[ - Picard:: Solve ...] Time : 1.621637e+02s
Iteration 1
. ||u-un|| = 1.568893e+00
. ||p-pn|| = 1.103354e+00
[ - Picard:: Assemble nonlinear terms ...] Time : 1.490831e+01s
[ - Picard:: Assemble BC ...] Time : 7.271282e+00s
Picard:: non linear iteration 1
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.889571e-02
2 picard KSP Residual norm 1.341376e-02
3 picard KSP Residual norm 7.575562e-03
4 picard KSP Residual norm 5.168098e-03
5 picard KSP Residual norm 3.821270e-03
6 picard KSP Residual norm 2.813832e-03
7 picard KSP Residual norm 2.048690e-03
8 picard KSP Residual norm 1.235517e-03
9 picard KSP Residual norm 6.764500e-04
10 picard KSP Residual norm 3.092284e-04
11 picard KSP Residual norm 1.412939e-04
12 picard KSP Residual norm 6.116599e-05
13 picard KSP Residual norm 3.525564e-05
14 picard KSP Residual norm 2.181145e-05
15 picard KSP Residual norm 1.414761e-05
[ - Picard:: Solve ...] Time : 1.601143e+02s
Iteration 2
. ||u-un|| = 1.250955e-01
. ||p-pn|| = 1.035702e-01
[ - Picard:: Assemble nonlinear terms ...] Time : 1.495361e+01s
[ - Picard:: Assemble BC ...] Time : 7.196363e+00s
Picard:: non linear iteration 2
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.778749e-02
2 picard KSP Residual norm 1.283553e-02
3 picard KSP Residual norm 7.393359e-03
4 picard KSP Residual norm 4.925218e-03
5 picard KSP Residual norm 3.511028e-03
6 picard KSP Residual norm 2.780576e-03
7 picard KSP Residual norm 2.000019e-03
8 picard KSP Residual norm 1.309000e-03
9 picard KSP Residual norm 6.815237e-04
10 picard KSP Residual norm 3.241558e-04
11 picard KSP Residual norm 1.487667e-04
12 picard KSP Residual norm 6.355959e-05
13 picard KSP Residual norm 3.564725e-05
14 picard KSP Residual norm 2.297892e-05
15 picard KSP Residual norm 1.446551e-05
[ - Picard:: Solve ...] Time : 1.510474e+02s
Iteration 3
. ||u-un|| = 4.583270e-02
. ||p-pn|| = 2.608103e-02
[ - Picard:: Assemble nonlinear terms ...] Time : 1.489383e+01s
[ - Picard:: Assemble BC ...] Time : 7.236979e+00s
Picard:: non linear iteration 3
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.757235e-02
2 picard KSP Residual norm 1.295349e-02
3 picard KSP Residual norm 7.600230e-03
4 picard KSP Residual norm 5.022670e-03
5 picard KSP Residual norm 3.566350e-03
6 picard KSP Residual norm 2.867976e-03
7 picard KSP Residual norm 2.024281e-03
8 picard KSP Residual norm 1.332588e-03
9 picard KSP Residual norm 6.927897e-04
10 picard KSP Residual norm 3.273597e-04
11 picard KSP Residual norm 1.477043e-04
12 picard KSP Residual norm 6.302567e-05
13 picard KSP Residual norm 3.444103e-05
14 picard KSP Residual norm 2.268085e-05
15 picard KSP Residual norm 1.471942e-05
[ - Picard:: Solve ...] Time : 1.514800e+02s
Iteration 4
. ||u-un|| = 1.376228e-02
. ||p-pn|| = 5.355304e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 1.491778e+01s
[ - Picard:: Assemble BC ...] Time : 7.241514e+00s
Picard:: non linear iteration 4
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.754964e-02
2 picard KSP Residual norm 1.302392e-02
3 picard KSP Residual norm 7.666289e-03
4 picard KSP Residual norm 5.082026e-03
5 picard KSP Residual norm 3.618800e-03
6 picard KSP Residual norm 2.913713e-03
7 picard KSP Residual norm 2.047885e-03
8 picard KSP Residual norm 1.341392e-03
9 picard KSP Residual norm 6.990039e-04
10 picard KSP Residual norm 3.297114e-04
11 picard KSP Residual norm 1.482558e-04
12 picard KSP Residual norm 6.334670e-05
13 picard KSP Residual norm 3.466451e-05
14 picard KSP Residual norm 2.290401e-05
15 picard KSP Residual norm 1.490240e-05
[ - Picard:: Solve ...] Time : 1.485922e+02s
Iteration 5
. ||u-un|| = 3.942415e-03
. ||p-pn|| = 1.787833e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 1.489697e+01s
[ - Picard:: Assemble BC ...] Time : 7.215104e+00s
Picard:: non linear iteration 5
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.754892e-02
2 picard KSP Residual norm 1.303270e-02
3 picard KSP Residual norm 7.670191e-03
4 picard KSP Residual norm 5.091048e-03
5 picard KSP Residual norm 3.629277e-03
6 picard KSP Residual norm 2.921157e-03
7 picard KSP Residual norm 2.053271e-03
8 picard KSP Residual norm 1.343273e-03
9 picard KSP Residual norm 7.000344e-04
10 picard KSP Residual norm 3.304536e-04
11 picard KSP Residual norm 1.486650e-04
12 picard KSP Residual norm 6.362437e-05
13 picard KSP Residual norm 3.496594e-05
14 picard KSP Residual norm 2.308994e-05
15 picard KSP Residual norm 1.496261e-05
[ - Picard:: Solve ...] Time : 1.506625e+02s
Iteration 6
. ||u-un|| = 1.054250e-03
. ||p-pn|| = 5.283838e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 1.503489e+01s
[ - Picard:: Assemble BC ...] Time : 7.077254e+00s
Picard:: non linear iteration 6
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.754794e-02
2 picard KSP Residual norm 1.302978e-02
3 picard KSP Residual norm 7.666938e-03
4 picard KSP Residual norm 5.089187e-03
5 picard KSP Residual norm 3.628469e-03
6 picard KSP Residual norm 2.920208e-03
7 picard KSP Residual norm 2.053330e-03
8 picard KSP Residual norm 1.343438e-03
9 picard KSP Residual norm 6.997841e-04
10 picard KSP Residual norm 3.304878e-04
11 picard KSP Residual norm 1.487461e-04
12 picard KSP Residual norm 6.368708e-05
13 picard KSP Residual norm 3.504747e-05
14 picard KSP Residual norm 2.313488e-05
15 picard KSP Residual norm 1.496767e-05
[ - Picard:: Solve ...] Time : 1.594313e+02s
Iteration 7
. ||u-un|| = 2.304738e-04
. ||p-pn|| = 1.155771e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 1.498375e+01s
[ - Picard:: Assemble BC ...] Time : 7.157227e+00s
Picard:: non linear iteration 7
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.754725e-02
2 picard KSP Residual norm 1.302859e-02
3 picard KSP Residual norm 7.666052e-03
4 picard KSP Residual norm 5.088193e-03
5 picard KSP Residual norm 3.627663e-03
6 picard KSP Residual norm 2.919600e-03
7 picard KSP Residual norm 2.053064e-03
8 picard KSP Residual norm 1.343409e-03
9 picard KSP Residual norm 6.996210e-04
10 picard KSP Residual norm 3.304342e-04
11 picard KSP Residual norm 1.487340e-04
12 picard KSP Residual norm 6.368417e-05
13 picard KSP Residual norm 3.505059e-05
14 picard KSP Residual norm 2.313598e-05
15 picard KSP Residual norm 1.496536e-05
[ - Picard:: Solve ...] Time : 2.822249e+02s
Iteration 8
. ||u-un|| = 5.212837e-05
. ||p-pn|| = 2.779347e-05
[ - Picard:: Assemble nonlinear terms ...] Time : 2.176291e+01s
[ - Picard:: Assemble BC ...] Time : 5.714910e-01s
Picard:: non linear iteration 8
0 picard KSP Residual norm 1.731652e+01
1 picard KSP Residual norm 1.754704e-02
2 picard KSP Residual norm 1.302852e-02
3 picard KSP Residual norm 7.666100e-03
4 picard KSP Residual norm 5.088094e-03
5 picard KSP Residual norm 3.627548e-03
6 picard KSP Residual norm 2.919545e-03
7 picard KSP Residual norm 2.053015e-03
8 picard KSP Residual norm 1.343401e-03
9 picard KSP Residual norm 6.995906e-04
10 picard KSP Residual norm 3.304149e-04
11 picard KSP Residual norm 1.487239e-04
12 picard KSP Residual norm 6.367889e-05
13 picard KSP Residual norm 3.504643e-05
14 picard KSP Residual norm 2.313370e-05
15 picard KSP Residual norm 1.496455e-05
[ - Picard:: Solve ...] Time : 2.007416e+02s
Iteration 9
. ||u-un|| = 1.400111e-05
. ||p-pn|| = 6.109627e-06
************************************************************************************************************************
*** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document ***
************************************************************************************************************************
---------------------------------------------- PETSc Performance Summary: ----------------------------------------------
./feelpp_steady_ns_3d on a linux-gnu-c-opt named irma-atlas with 32 processors, by prudhomm Wed Feb 4 12:01:57 2015
Using Petsc Release Version 3.4.2, Jul, 02, 2013
Max Max/Min Avg Total
Time (sec): 2.105e+03 1.00000 2.105e+03
Objects: 1.376e+04 1.00000 1.376e+04
Flops: 7.440e+09 1.30931 6.436e+09 2.060e+11
Flops/sec: 3.534e+06 1.30931 3.057e+06 9.783e+07
MPI Messages: 1.874e+05 3.33233 1.157e+05 3.701e+06
MPI Message Lengths: 3.067e+08 2.24232 1.954e+03 7.231e+09
MPI Reductions: 6.272e+04 1.00000
Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract)
e.g., VecAXPY() for real vectors of length N --> 2N flops
and VecAXPY() for complex vectors of length N --> 8N flops
Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions --
Avg %Total Avg %Total counts %Total Avg %Total counts %Total
0: Main Stage: 2.1052e+03 100.0% 2.0595e+11 100.0% 3.701e+06 100.0% 1.954e+03 100.0% 6.272e+04 100.0%
------------------------------------------------------------------------------------------------------------------------
See the 'Profiling' chapter of the users' manual for details on interpreting output.
Phase summary info:
Count: number of times phase was executed
Time and Flops: Max - maximum over all processors
Ratio - ratio of maximum to minimum over all processors
Mess: number of messages sent
Avg. len: average message length (bytes)
Reduct: number of global reductions
Global: entire computation
Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop().
%T - percent time in this phase %f - percent flops in this phase
%M - percent messages in this phase %L - percent message lengths in this phase
%R - percent reductions in this phase
Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors)
------------------------------------------------------------------------------------------------------------------------
Event Count Time (sec) Flops --- Global --- --- Stage --- Total
Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s
------------------------------------------------------------------------------------------------------------------------
--- Event Stage 0: Main Stage
VecDotNorm2 163 1.0 2.2022e-01 3.1 5.74e+06 1.4 0.0e+00 0.0e+00 1.6e+02 0 0 0 0 0 0 0 0 0 0 708
VecMDot 9790 1.0 5.8129e+00 1.2 8.79e+08 1.4 0.0e+00 0.0e+00 9.8e+03 0 12 0 0 16 0 12 0 0 16 4104
VecNorm 10299 1.0 1.6323e+00 1.3 7.59e+07 1.4 0.0e+00 0.0e+00 1.0e+04 0 1 0 0 16 0 1 0 0 16 1259
VecScale 10595 1.0 6.6354e-02 1.4 3.94e+07 1.4 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 16063
VecCopy 489 1.0 2.8226e-02 3.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecSet 14972 1.0 3.5278e-01 3.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecAXPY 958 1.0 4.3920e-02 3.1 1.15e+07 1.4 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7091
VecAYPX 10 1.0 5.6100e-04 2.9 8.80e+04 1.4 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4263
VecMAXPY 10412 1.0 6.1836e-01 1.5 9.73e+08 1.4 0.0e+00 0.0e+00 0.0e+00 0 13 0 0 0 0 13 0 0 0 42670
VecAssemblyBegin 7624 1.0 3.7472e+00 1.3 0.00e+00 0.0 5.0e+05 1.5e+03 2.3e+04 0 0 14 10 36 0 0 14 10 36 0
VecAssemblyEnd 7624 1.0 6.9164e-02 4.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecScatterBegin 18086 1.0 1.2335e+00 2.7 0.00e+00 0.0 2.8e+06 1.9e+03 0.0e+00 0 0 76 75 0 0 0 76 75 0 0
VecScatterEnd 18086 1.0 1.0764e+01 4.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecNormalize 10126 1.0 1.5444e+00 1.2 1.09e+08 1.4 0.0e+00 0.0e+00 1.0e+04 0 1 0 0 16 0 1 0 0 16 1916
MatMult 9810 1.0 2.4808e+01 1.8 5.43e+09 1.3 2.0e+06 2.1e+03 0.0e+00 1 74 54 58 0 1 74 54 58 0 6106
MatMultAdd 326 1.0 1.9123e-01 2.6 2.27e+07 1.3 6.6e+04 2.9e+02 0.0e+00 0 0 2 0 0 0 0 2 0 0 3275
MatConvert 489 1.0 6.7728e+00 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatAssemblyBegin 1948 1.0 6.8496e+01 1.9 0.00e+00 0.0 6.3e+03 1.5e+05 3.9e+03 3 0 0 13 6 3 0 0 13 6 0
MatAssemblyEnd 1948 1.0 1.5302e+00 1.6 0.00e+00 0.0 1.1e+04 9.3e+02 2.1e+02 0 0 0 0 0 0 0 0 0 0 0
MatGetRowIJ 978 1.0 1.5225e-03 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatZeroEntries 44 1.0 1.0059e-01 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatAXPY 10 1.0 1.1414e-01 2.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
KSPGMRESOrthog 9637 1.0 5.2132e+00 1.1 1.71e+09 1.4 0.0e+00 0.0e+00 9.6e+03 0 23 0 0 15 0 23 0 0 15 8911
KSPSetUp 499 1.0 1.8582e-01 3.0 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+01 0 0 0 0 0 0 0 0 0 0 0
KSPSolve 10 1.0 1.8637e+03 1.0 7.44e+09 1.3 3.6e+06 1.7e+03 6.0e+04 89100 98 86 96 89100 98 86 96 111
PCSetUp 499 1.0 8.1217e+02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.8e+01 39 0 0 0 0 39 0 0 0 0 0
PCApply 163 1.0 1.8611e+03 1.0 7.08e+09 1.3 3.6e+06 1.7e+03 5.9e+04 88 95 97 83 95 88 95 97 83 95 105
------------------------------------------------------------------------------------------------------------------------
Memory usage is given in bytes:
Object Type Creations Destructions Memory Descendants' Mem.
Reports information only for process 0.
--- Event Stage 0: Main Stage
Vector 5980 5980 279271136 0
Vector Scatter 1941 1941 2088516 0
Index Set 4050 4050 37533728 0
IS L to G Mapping 1641 1641 22461948 0
Matrix 91 91 291444588 0
Krylov Solver 22 22 232576 0
Preconditioner 34 34 34576 0
Viewer 1 0 0 0
========================================================================================================================
Average time to get PetscTime(): 1.19209e-07
Average time for MPI_Barrier(): 2.16007e-05
Average time for zero size MPI_Send(): 1.21295e-05
#PETSc Option Table entries:
--mu=0.02
-log_summary
#End of PETSc Option Table entries
Compiled without FORTRAN kernels
Compiled with full precision matrices (default)
sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4
Configure run at: Wed Aug 27 14:19:17 2014
Configure options: --with-shared-libraries --with-debugging=0 --useThreads 0 --with-clanguage=C++ --with-c-support --with-fortran-interfaces=1 --with-mpi-dir=/usr/lib/openmpi --with-mpi-shared=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-blacs=1 --with-blacs-include=/usr/include --with-blacs-lib="[/usr/lib/libblacsCinit-openmpi.so,/usr/lib/libblacs-openmpi.so]" --with-scalapack=1 --with-scalapack-include=/usr/include --with-scalapack-lib=/usr/lib/libscalapack-openmpi.so --with-mumps=1 --with-mumps-include=/usr/include --with-mumps-lib="[/usr/lib/libdmumps.so,/usr/lib/libzmumps.so,/usr/lib/libsmumps.so,/usr/lib/libcmumps.so,/usr/lib/libmumps_common.so,/usr/lib/libpord.so]" --with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse --with-umfpack-lib="[/usr/lib/libumfpack.so,/usr/lib/libamd.so]" --with-cholmod=1 --with-cholmod-include=/usr/include/suitesparse --with-cholmod-lib=/usr/lib/libcholmod.so --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=/usr/lib/libspooles.so --with-hypre=1 --with-hypre-dir=/usr --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="[/usr/lib/libptesmumps.so,/usr/lib/libptscotch.so,/usr/lib/libptscotcherr.so]" --with-fftw=1 --with-fftw-include=/usr/include --with-fftw-lib="[/usr/lib/x86_64-linux-gnu/libfftw3.so,/usr/lib/x86_64-linux-gnu/libfftw3_mpi.so]" --with-hdf5=1 --with-hdf5-dir=/usr/lib/x86_64-linux-gnu/hdf5/openmpi --CXX_LINKER_FLAGS=-Wl,--no-as-needed
-----------------------------------------
Libraries compiled on Wed Aug 27 14:19:17 2014 on binet
Machine characteristics: Linux-3.2.0-4-amd64-x86_64-with-debian-jessie-sid
Using PETSc directory: /build/petsc-lccVo9/petsc-3.4.2.dfsg1
Using PETSc arch: linux-gnu-c-opt
-----------------------------------------
Using C compiler: mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC ${COPTFLAGS} ${CFLAGS}
Using Fortran compiler: mpif90 -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ${FOPTFLAGS} ${FFLAGS}
-----------------------------------------
Using include paths: -I/build/petsc-lccVo9/petsc-3.4.2.dfsg1/linux-gnu-c-opt/include -I/build/petsc-lccVo9/petsc-3.4.2.dfsg1/include -I/build/petsc-lccVo9/petsc-3.4.2.dfsg1/include -I/build/petsc-lccVo9/petsc-3.4.2.dfsg1/linux-gnu-c-opt/include -I/usr/include -I/usr/include/suitesparse -I/usr/include/scotch -I/usr/lib/x86_64-linux-gnu/hdf5/openmpi/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi
-----------------------------------------
Using C linker: mpicxx
Using Fortran linker: mpif90
Using libraries: -L/build/petsc-lccVo9/petsc-3.4.2.dfsg1/linux-gnu-c-opt/lib -L/build/petsc-lccVo9/petsc-3.4.2.dfsg1/linux-gnu-c-opt/lib -lpetsc -L/usr/lib -lHYPRE_utilities -lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lcholmod -lumfpack -lamd -llapack -lblas -lX11 -lpthread -lptesmumps -lptscotch -lptscotcherr -L/usr/lib/x86_64-linux-gnu -lfftw3 -lfftw3_mpi -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi/lib -lhdf5_fortran -lhdf5_hl -lhdf5 -lz -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.9.1 -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -ldl -lmpi -lhwloc -lgcc_s -lpthread -ldl
-----------------------------------------
Raw
atlas-h0.1-Re100-np32-petscO3-with-inlining
Delaunizing vertices...
Delaunay seconds: 0.063589
Creating surface mesh ...
Surface mesh seconds: 0.016502
Recovering boundaries...
Boundary recovery seconds: 0.020186
Removing exterior tetrahedra ...
Exterior tets removal seconds: 0.003059
Recovering Delaunayness...
Delaunay recovery seconds: 0.017215
Optimizing mesh...
Optimization seconds: 0.023875
Writing nodes.
Writing elements.
Writing faces.
Writing edges.
Output seconds: 0.009569
Total running seconds: 0.15486
Statistics:
Input points: 4524
Input facets: 9044
Input segments: 13566
Input holes: 0
Input regions: 0
Mesh points: 4528
Mesh tetrahedra: 13836
Mesh faces: 32194
Mesh edges: 22885
Mesh faces on facets: 9044
Mesh edges on segments: 13566
Steiner points inside domain: 4
*** Created partitionFace -1 (18 23 )
*** Created partitionFace -2 (23 17 )
*** Created partitionFace -3 (23 21 )
*** Created partitionFace -4 (27 18 )
*** Created partitionFace -5 (25 27 )
*** Created partitionFace -6 (25 8 )
*** Created partitionFace -7 (6 8 )
*** Created partitionFace -8 (6 5 )
*** Created partitionFace -9 (10 5 )
*** Created partitionFace -10 (11 10 )
*** Created partitionFace -11 (15 11 )
*** Created partitionFace -12 (16 15 )
*** Created partitionFace -13 (14 16 )
*** Created partitionFace -14 (14 2 )
*** Created partitionFace -15 (3 2 )
*** Created partitionFace -16 (31 3 )
*** Created partitionFace -17 (31 30 )
*** Created partitionFace -18 (20 30 )
*** Created partitionFace -19 (24 20 )
*** Created partitionFace -20 (24 21 )
*** Created partitionFace -21 (16 13 )
*** Created partitionFace -22 (13 1 )
*** Created partitionFace -23 (1 4 )
*** Created partitionFace -24 (32 4 )
*** Created partitionFace -25 (32 30 )
*** Created partitionFace -26 (24 22 )
*** Created partitionFace -27 (23 22 )
*** Created partitionFace -28 (17 27 )
*** Created partitionFace -29 (26 27 )
*** Created partitionFace -30 (8 26 )
*** Created partitionFace -31 (9 6 )
*** Created partitionFace -32 (9 12 )
*** Created partitionFace -33 (15 12 )
*** Created partitionFace -34 (22 21 )
*** Created partitionFace -35 (17 18 )
*** Created partitionFace -36 (11 12 )
*** Created partitionFace -37 (18 19 )
*** Created partitionFace -38 (19 28 )
*** Created partitionFace -39 (28 29 )
*** Created partitionFace -40 (19 29 )
*** Created partitionFace -41 (31 29 )
*** Created partitionFace -42 (29 25 )
*** Created partitionFace -43 (25 31 )
*** Created partitionFace -44 (31 7 )
*** Created partitionFace -45 (25 7 )
*** Created partitionFace -46 (7 3 )
*** Created partitionFace -47 (5 3 )
*** Created partitionFace -48 (7 5 )
*** Created partitionFace -49 (2 5 )
*** Created partitionFace -50 (5 14 )
*** Created partitionFace -51 (23 19 )
*** Created partitionFace -52 (14 15 )
*** Created partitionFace -53 (24 23 )
*** Created partitionFace -54 (19 24 )
*** Created partitionFace -55 (25 28 )
*** Created partitionFace -56 (27 28 )
*** Created partitionFace -57 (19 27 )
*** Created partitionFace -58 (8 7 )
*** Created partitionFace -59 (30 29 )
*** Created partitionFace -60 (19 20 )
*** Created partitionFace -61 (10 14 )
*** Created partitionFace -62 (8 5 )
*** Created partitionFace -63 (20 29 )
*** Created partitionFace -64 (13 14 )
*** Created partitionFace -65 (14 1 )
*** Created partitionFace -66 (1 3 )
*** Created partitionFace -67 (3 4 )
*** Created partitionFace -68 (4 31 )
*** Created partitionFace -69 (32 31 )
*** Created partitionFace -70 (2 1 )
*** Created partitionFace -71 (25 26 )
*** Created partitionFace -72 (6 10 )
*** Created partitionFace -73 (10 9 )
*** Created partitionFace -74 (12 10 )
*** Created partitionFace -75 (17 20 )
*** Created partitionFace -76 (23 20 )
*** Created partitionFace -77 (20 28 )
*** Created partitionFace -78 (28 17 )
*** Created partitionFace -79 (28 26 )
*** Created partitionFace -80 (29 26 )
*** Created partitionFace -81 (32 26 )
*** Created partitionFace -82 (29 32 )
*** Created partitionFace -83 (7 32 )
*** Created partitionFace -84 (26 7 )
*** Created partitionFace -85 (7 4 )
*** Created partitionFace -86 (6 7 )
*** Created partitionFace -87 (6 2 )
*** Created partitionFace -88 (4 6 )
*** Created partitionFace -89 (2 4 )
*** Created partitionFace -90 (9 2 )
*** Created partitionFace -91 (9 13 )
*** Created partitionFace -92 (13 2 )
*** Created partitionFace -93 (15 13 )
*** Created partitionFace -94 (28 30 )
*** Created partitionFace -95 (13 12 )
*** Created partitionFace -96 (9 14 )
*** Created partitionFace -97 (5 9 )
*** Created partitionFace -98 (17 19 )
*** Created partitionFace -99 (13 5 )
*** Created partitionFace -100 (12 14 )
*** Created partitionFace -101 (30 19 )
*** Created partitionFace -102 (15 10 )
*** Created partitionFace -103 (3 6 )
*** Created partitionFace -104 (26 31 )
*** Created partitionFace -105 (11 14 )
Re FunctionSpace Velocity Pressure
100 239750 229341 10409
[blockns]
- cd: 1
- pcd: 1
- pcd.inflow: Robin
- pcd.outflow: Dirichlet
- pcd.order: 1
field increment
- type Dirichlet
. boundary inlet expr : {0,0,0}
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
field velocity
- type Dirichlet
. boundary inlet expr : {3*16*y*(1-y)*z*(1-z)/2,0,0}:y:z
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
[ - Setting up Precondition Blockns...] Time : 0.471408s
0 stokes KSP Residual norm 1.734978e+01
1 stokes KSP Residual norm 4.090450e-02
2 stokes KSP Residual norm 1.811692e-02
3 stokes KSP Residual norm 1.294235e-02
4 stokes KSP Residual norm 9.339768e-03
5 stokes KSP Residual norm 7.969086e-03
6 stokes KSP Residual norm 6.612845e-03
7 stokes KSP Residual norm 6.000457e-03
8 stokes KSP Residual norm 5.517945e-03
9 stokes KSP Residual norm 5.041947e-03
10 stokes KSP Residual norm 4.595304e-03
11 stokes KSP Residual norm 4.186158e-03
12 stokes KSP Residual norm 3.762340e-03
13 stokes KSP Residual norm 3.477664e-03
14 stokes KSP Residual norm 3.208694e-03
15 stokes KSP Residual norm 2.989572e-03
16 stokes KSP Residual norm 2.686007e-03
17 stokes KSP Residual norm 2.378908e-03
18 stokes KSP Residual norm 2.014417e-03
19 stokes KSP Residual norm 1.538320e-03
20 stokes KSP Residual norm 1.138642e-03
21 stokes KSP Residual norm 7.400920e-04
22 stokes KSP Residual norm 4.762280e-04
23 stokes KSP Residual norm 2.644587e-04
24 stokes KSP Residual norm 1.553194e-04
25 stokes KSP Residual norm 9.760738e-05
26 stokes KSP Residual norm 5.847749e-05
27 stokes KSP Residual norm 3.077053e-05
28 stokes KSP Residual norm 1.758558e-05
29 stokes KSP Residual norm 9.792288e-06
[ - Solving Stokes...] Time : 9.063242e+01s
[ - Exporting Stokes results...] Time : 2.659299e-01s
[ - Picard:: Assemble nonlinear terms ...] Time : 7.618639e-01s
[ - Picard:: Assemble BC ...] Time : 2.042041e-01s
Picard:: non linear iteration 0
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 2.393666e-02
2 picard KSP Residual norm 1.874651e-02
3 picard KSP Residual norm 1.192680e-02
4 picard KSP Residual norm 8.532802e-03
5 picard KSP Residual norm 5.623659e-03
6 picard KSP Residual norm 3.997742e-03
7 picard KSP Residual norm 2.313836e-03
8 picard KSP Residual norm 1.389637e-03
9 picard KSP Residual norm 6.580230e-04
10 picard KSP Residual norm 3.185575e-04
11 picard KSP Residual norm 1.427720e-04
12 picard KSP Residual norm 7.220346e-05
13 picard KSP Residual norm 4.374364e-05
14 picard KSP Residual norm 2.536231e-05
15 picard KSP Residual norm 1.505161e-05
[ - Picard:: Solve ...] Time : 4.609038e+01s
Iteration 1
. ||u-un|| = 1.568721e+00
. ||p-pn|| = 1.103295e+00
[ - Picard:: Assemble nonlinear terms ...] Time : 7.601650e-01s
[ - Picard:: Assemble BC ...] Time : 1.900480e-01s
Picard:: non linear iteration 1
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.871285e-02
2 picard KSP Residual norm 1.327100e-02
3 picard KSP Residual norm 7.541623e-03
4 picard KSP Residual norm 5.178873e-03
5 picard KSP Residual norm 3.820630e-03
6 picard KSP Residual norm 2.805417e-03
7 picard KSP Residual norm 2.036345e-03
8 picard KSP Residual norm 1.234396e-03
9 picard KSP Residual norm 6.777705e-04
10 picard KSP Residual norm 3.079921e-04
11 picard KSP Residual norm 1.388400e-04
12 picard KSP Residual norm 6.050767e-05
13 picard KSP Residual norm 3.479633e-05
14 picard KSP Residual norm 2.180390e-05
15 picard KSP Residual norm 1.423764e-05
[ - Picard:: Solve ...] Time : 4.706932e+01s
Iteration 2
. ||u-un|| = 1.248801e-01
. ||p-pn|| = 1.033918e-01
[ - Picard:: Assemble nonlinear terms ...] Time : 7.600119e-01s
[ - Picard:: Assemble BC ...] Time : 1.870100e-01s
Picard:: non linear iteration 2
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.764325e-02
2 picard KSP Residual norm 1.268875e-02
3 picard KSP Residual norm 7.355701e-03
4 picard KSP Residual norm 4.926424e-03
5 picard KSP Residual norm 3.509045e-03
6 picard KSP Residual norm 2.774904e-03
7 picard KSP Residual norm 1.989972e-03
8 picard KSP Residual norm 1.304860e-03
9 picard KSP Residual norm 6.831903e-04
10 picard KSP Residual norm 3.231359e-04
11 picard KSP Residual norm 1.468506e-04
12 picard KSP Residual norm 6.315516e-05
13 picard KSP Residual norm 3.551452e-05
14 picard KSP Residual norm 2.310440e-05
15 picard KSP Residual norm 1.461638e-05
[ - Picard:: Solve ...] Time : 4.713685e+01s
Iteration 3
. ||u-un|| = 4.577566e-02
. ||p-pn|| = 2.610508e-02
[ - Picard:: Assemble nonlinear terms ...] Time : 7.579050e-01s
[ - Picard:: Assemble BC ...] Time : 1.901641e-01s
Picard:: non linear iteration 3
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.742450e-02
2 picard KSP Residual norm 1.279541e-02
3 picard KSP Residual norm 7.559020e-03
4 picard KSP Residual norm 5.019475e-03
5 picard KSP Residual norm 3.561392e-03
6 picard KSP Residual norm 2.861991e-03
7 picard KSP Residual norm 2.016151e-03
8 picard KSP Residual norm 1.329614e-03
9 picard KSP Residual norm 6.939123e-04
10 picard KSP Residual norm 3.272603e-04
11 picard KSP Residual norm 1.467847e-04
12 picard KSP Residual norm 6.280864e-05
13 picard KSP Residual norm 3.445766e-05
14 picard KSP Residual norm 2.284357e-05
15 picard KSP Residual norm 1.485317e-05
[ - Picard:: Solve ...] Time : 4.713225e+01s
Iteration 4
. ||u-un|| = 1.376702e-02
. ||p-pn|| = 5.353204e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 7.568669e-01s
[ - Picard:: Assemble BC ...] Time : 1.921468e-01s
Picard:: non linear iteration 4
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.739918e-02
2 picard KSP Residual norm 1.286373e-02
3 picard KSP Residual norm 7.624274e-03
4 picard KSP Residual norm 5.078054e-03
5 picard KSP Residual norm 3.613228e-03
6 picard KSP Residual norm 2.907636e-03
7 picard KSP Residual norm 2.039849e-03
8 picard KSP Residual norm 1.338299e-03
9 picard KSP Residual norm 6.996898e-04
10 picard KSP Residual norm 3.296953e-04
11 picard KSP Residual norm 1.473446e-04
12 picard KSP Residual norm 6.310782e-05
13 picard KSP Residual norm 3.467708e-05
14 picard KSP Residual norm 2.306731e-05
15 picard KSP Residual norm 1.502462e-05
[ - Picard:: Solve ...] Time : 4.712622e+01s
Iteration 5
. ||u-un|| = 3.943753e-03
. ||p-pn|| = 1.783312e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 7.591610e-01s
[ - Picard:: Assemble BC ...] Time : 1.908650e-01s
Picard:: non linear iteration 5
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.739813e-02
2 picard KSP Residual norm 1.287288e-02
3 picard KSP Residual norm 7.628172e-03
4 picard KSP Residual norm 5.087228e-03
5 picard KSP Residual norm 3.623852e-03
6 picard KSP Residual norm 2.915202e-03
7 picard KSP Residual norm 2.045181e-03
8 picard KSP Residual norm 1.340070e-03
9 picard KSP Residual norm 7.006604e-04
10 picard KSP Residual norm 3.303888e-04
11 picard KSP Residual norm 1.476852e-04
12 picard KSP Residual norm 6.335478e-05
13 picard KSP Residual norm 3.496586e-05
14 picard KSP Residual norm 2.325078e-05
15 picard KSP Residual norm 1.508213e-05
[ - Picard:: Solve ...] Time : 4.703068e+01s
Iteration 6
. ||u-un|| = 1.055992e-03
. ||p-pn|| = 5.300006e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 7.584209e-01s
[ - Picard:: Assemble BC ...] Time : 1.889288e-01s
Picard:: non linear iteration 6
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.739726e-02
2 picard KSP Residual norm 1.287020e-02
3 picard KSP Residual norm 7.624959e-03
4 picard KSP Residual norm 5.085464e-03
5 picard KSP Residual norm 3.623131e-03
6 picard KSP Residual norm 2.914296e-03
7 picard KSP Residual norm 2.045225e-03
8 picard KSP Residual norm 1.340217e-03
9 picard KSP Residual norm 7.004292e-04
10 picard KSP Residual norm 3.304027e-04
11 picard KSP Residual norm 1.477465e-04
12 picard KSP Residual norm 6.340964e-05
13 picard KSP Residual norm 3.504426e-05
14 picard KSP Residual norm 2.329519e-05
15 picard KSP Residual norm 1.508713e-05
[ - Picard:: Solve ...] Time : 4.727395e+01s
Iteration 7
. ||u-un|| = 2.311798e-04
. ||p-pn|| = 1.159386e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 7.666700e-01s
[ - Picard:: Assemble BC ...] Time : 2.291849e-01s
Picard:: non linear iteration 7
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.739661e-02
2 picard KSP Residual norm 1.286903e-02
3 picard KSP Residual norm 7.624075e-03
4 picard KSP Residual norm 5.084480e-03
5 picard KSP Residual norm 3.622332e-03
6 picard KSP Residual norm 2.913687e-03
7 picard KSP Residual norm 2.044959e-03
8 picard KSP Residual norm 1.340192e-03
9 picard KSP Residual norm 7.002764e-04
10 picard KSP Residual norm 3.303476e-04
11 picard KSP Residual norm 1.477344e-04
12 picard KSP Residual norm 6.340667e-05
13 picard KSP Residual norm 3.504746e-05
14 picard KSP Residual norm 2.329633e-05
15 picard KSP Residual norm 1.508492e-05
[ - Picard:: Solve ...] Time : 5.010640e+01s
Iteration 8
. ||u-un|| = 5.204740e-05
. ||p-pn|| = 2.779763e-05
[ - Picard:: Assemble nonlinear terms ...] Time : 7.695842e-01s
[ - Picard:: Assemble BC ...] Time : 1.987071e-01s
Picard:: non linear iteration 8
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.739640e-02
2 picard KSP Residual norm 1.286895e-02
3 picard KSP Residual norm 7.624118e-03
4 picard KSP Residual norm 5.084375e-03
5 picard KSP Residual norm 3.622211e-03
6 picard KSP Residual norm 2.913627e-03
7 picard KSP Residual norm 2.044911e-03
8 picard KSP Residual norm 1.340186e-03
9 picard KSP Residual norm 7.002473e-04
10 picard KSP Residual norm 3.303292e-04
11 picard KSP Residual norm 1.477256e-04
12 picard KSP Residual norm 6.340183e-05
13 picard KSP Residual norm 3.504352e-05
14 picard KSP Residual norm 2.329410e-05
15 picard KSP Residual norm 1.508412e-05
[ - Picard:: Solve ...] Time : 5.040704e+01s
Iteration 9
. ||u-un|| = 1.399112e-05
. ||p-pn|| = 6.133381e-06
************************************************************************************************************************
*** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document ***
************************************************************************************************************************
---------------------------------------------- PETSc Performance Summary: ----------------------------------------------
./feelpp_steady_ns_3d on a linux-gnu-c-opt named irma-atlas with 32 processors, by prudhomm Thu Feb 5 12:34:01 2015
Using Petsc Release Version 3.4.2, Jul, 02, 2013
Max Max/Min Avg Total
Time (sec): 5.399e+02 1.00000 5.399e+02
Objects: 1.413e+04 1.00000 1.413e+04
Flops: 1.433e+10 1.58385 1.171e+10 3.747e+11
Flops/sec: 2.654e+07 1.58385 2.169e+07 6.940e+08
MPI Messages: 3.345e+05 3.33071 2.273e+05 7.274e+06
MPI Message Lengths: 1.389e+09 2.40168 4.522e+03 3.289e+10
MPI Reductions: 6.676e+04 1.00000
Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract)
e.g., VecAXPY() for real vectors of length N --> 2N flops
and VecAXPY() for complex vectors of length N --> 8N flops
Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions --
Avg %Total Avg %Total counts %Total Avg %Total counts %Total
0: Main Stage: 5.3989e+02 100.0% 3.7467e+11 100.0% 7.274e+06 100.0% 4.522e+03 100.0% 6.676e+04 100.0%
------------------------------------------------------------------------------------------------------------------------
See the 'Profiling' chapter of the users' manual for details on interpreting output.
Phase summary info:
Count: number of times phase was executed
Time and Flops: Max - maximum over all processors
Ratio - ratio of maximum to minimum over all processors
Mess: number of messages sent
Avg. len: average message length (bytes)
Reduct: number of global reductions
Global: entire computation
Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop().
%T - percent time in this phase %f - percent flops in this phase
%M - percent messages in this phase %L - percent message lengths in this phase
%R - percent reductions in this phase
Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors)
------------------------------------------------------------------------------------------------------------------------
Event Count Time (sec) Flops --- Global --- --- Stage --- Total
Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s
------------------------------------------------------------------------------------------------------------------------
--- Event Stage 0: Main Stage
VecDotNorm2 164 1.0 6.9841e-02 4.3 5.81e+06 1.4 0.0e+00 0.0e+00 1.6e+02 0 0 0 0 0 0 0 0 0 0 2252
VecMDot 21762 1.0 1.1082e+0211.1 7.21e+08 1.5 0.0e+00 0.0e+00 1.1e+04 12 5 0 0 16 12 5 0 0 16 174
VecNorm 33565 1.0 1.3200e+0211.4 2.60e+08 1.6 0.0e+00 0.0e+00 1.1e+04 8 2 0 0 17 8 2 0 0 17 52
VecScale 33843 1.0 1.1965e-01 1.6 1.31e+08 1.6 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 28861
VecCopy 34037 1.0 4.4113e-01 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecSet 49628 1.0 3.7317e-01 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecAXPY 12389 1.0 1.4656e-01 1.8 1.09e+08 1.6 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 19532
VecAYPX 10 1.0 3.1209e-04 2.3 8.86e+04 1.4 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 7682
VecMAXPY 33659 1.0 6.5174e-01 2.7 8.99e+08 1.5 0.0e+00 0.0e+00 0.0e+00 0 6 0 0 0 0 6 0 0 0 36907
VecAssemblyBegin 7669 1.0 1.6405e+00 1.8 0.00e+00 0.0 5.8e+05 1.5e+03 2.3e+04 0 0 8 3 34 0 0 8 3 34 0
VecAssemblyEnd 7669 1.0 4.0579e-02 4.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecScatterBegin 41418 1.0 1.1050e+00 2.4 0.00e+00 0.0 5.7e+06 1.5e+03 0.0e+00 0 0 79 26 0 0 0 79 26 0 0
VecScatterEnd 41418 1.0 1.8692e+02101.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 17 0 0 0 0 17 0 0 0 0 0
VecNormalize 33391 1.0 1.3205e+0211.3 3.85e+08 1.6 0.0e+00 0.0e+00 1.1e+04 8 3 0 0 17 8 3 0 0 17 77
MatMult 21936 1.0 2.0466e+01 1.6 1.14e+10 1.6 2.4e+06 1.5e+03 0.0e+00 3 80 32 11 0 3 80 32 11 0 14590
MatMultAdd 328 1.0 7.7592e-02 1.8 2.36e+07 1.5 7.1e+04 2.7e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 8145
MatSolve 22254 1.0 1.8991e+02 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 25 0 0 0 0 25 0 0 0 0 0
MatLUFactorSym 12 1.0 1.3515e+00 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatLUFactorNum 504 1.0 2.6263e+02 3.5 8.11e+08 2.1 0.0e+00 0.0e+00 0.0e+00 27 5 0 0 0 27 5 0 0 0 71
MatILUFactorSym 12 1.0 1.1454e-01 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 0 0 0 0 0 0 0
MatAssemblyBegin 2451 1.0 2.6719e+00 5.7 0.00e+00 0.0 7.2e+03 1.3e+05 3.9e+03 0 0 0 3 6 0 0 0 3 6 0
MatAssemblyEnd 2451 1.0 1.5362e+00 1.8 0.00e+00 0.0 1.1e+04 8.7e+02 2.1e+02 0 0 0 0 0 0 0 0 0 0 0
MatGetRowIJ 24 1.0 2.0960e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatGetSubMatrice 492 1.0 1.5974e+01 1.7 0.00e+00 0.0 5.3e+05 4.2e+04 1.5e+03 2 0 7 68 2 2 0 7 68 2 0
MatGetOrdering 24 1.0 9.9335e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 8.8e+01 0 0 0 0 0 0 0 0 0 0 0
MatIncreaseOvrlp 12 1.0 4.6103e-02 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 2.4e+01 0 0 0 0 0 0 0 0 0 0 0
MatZeroEntries 44 1.0 7.2782e-02 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatAXPY 10 1.0 7.4751e-02 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
KSPGMRESOrthog 21608 1.0 1.1091e+0210.9 1.39e+09 1.5 0.0e+00 0.0e+00 1.0e+04 12 10 0 0 16 12 10 0 0 16 336
KSPSetUp 994 1.0 1.0396e-01 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+02 0 0 0 0 0 0 0 0 0 0 0
KSPSolve 10 1.0 5.1619e+02 1.0 1.43e+10 1.6 7.2e+06 4.4e+03 6.4e+04 96100 99 97 96 96100 99 97 96 726
PCSetUp 502 1.0 2.7839e+02 3.2 8.11e+08 2.1 5.5e+05 4.1e+04 2.0e+03 30 5 8 68 3 30 5 8 68 3 67
PCApply 164 1.0 5.1492e+02 1.0 1.40e+10 1.6 7.2e+06 4.4e+03 6.3e+04 95 97 98 96 95 95 97 98 96 95 708
------------------------------------------------------------------------------------------------------------------------
Memory usage is given in bytes:
Object Type Creations Destructions Memory Descendants' Mem.
Reports information only for process 0.
--- Event Stage 0: Main Stage
Vector 6029 6029 280254216 0
Vector Scatter 1976 1976 2126176 0
Index Set 4256 4256 40914540 0
IS L to G Mapping 1662 1662 26998376 0
Matrix 127 127 561386956 0
Krylov Solver 34 34 452992 0
Preconditioner 46 46 46672 0
Viewer 1 0 0 0
========================================================================================================================
Average time to get PetscTime(): 9.53674e-08
Average time for MPI_Barrier(): 1.4019e-05
Average time for zero size MPI_Send(): 9.31323e-06
#PETSc Option Table entries:
--mu=0.02
-log_summary
#End of PETSc Option Table entries
Compiled without FORTRAN kernels
Compiled with full precision matrices (default)
sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4
Configure run at: Thu Feb 5 09:07:19 2015
Configure options: --with-shared-libraries --with-debugging=0 --useThreads 0 --with-clanguage=C++ --with-c-support --with-fortran-interfaces=1 --with-mpi-dir=/usr/lib/openmpi --with-mpi-shared=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-blacs=1 --with-blacs-include=/usr/include --with-blacs-lib="[/usr/lib/libblacsCinit-openmpi.so,/usr/lib/libblacs-openmpi.so]" --with-scalapack=1 --with-scalapack-include=/usr/include --with-scalapack-lib=/usr/lib/libscalapack-openmpi.so --with-mumps=1 --with-mumps-include=/usr/include --with-mumps-lib="[/usr/lib/libdmumps.so,/usr/lib/libzmumps.so,/usr/lib/libsmumps.so,/usr/lib/libcmumps.so,/usr/lib/libmumps_common.so,/usr/lib/libpord.so]" --with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse --with-umfpack-lib="[/usr/lib/libumfpack.so,/usr/lib/libamd.so]" --with-cholmod=1 --with-cholmod-include=/usr/include/suitesparse --with-cholmod-lib=/usr/lib/libcholmod.so --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=/usr/lib/libspooles.so --with-hypre=1 --with-hypre-dir=/usr --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="[/usr/lib/libptesmumps.so,/usr/lib/libptscotch.so,/usr/lib/libptscotcherr.so]" --with-fftw=1 --with-fftw-include=/usr/include --with-fftw-lib="[/usr/lib/x86_64-linux-gnu/libfftw3.so,/usr/lib/x86_64-linux-gnu/libfftw3_mpi.so]" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --CXXFLAGS=-O3 --CFLAGS=-O3 --CXXOPTFLAGS=-O3 -COPTFLAGS=-O3
-----------------------------------------
Libraries compiled on Thu Feb 5 09:07:19 2015 on irma-atlas
Machine characteristics: Linux-3.2.0-4-amd64-x86_64-with-debian-8.0
Using PETSc directory: /tmp/petsc-3.4.2.dfsg1
Using PETSc arch: linux-gnu-c-opt
-----------------------------------------
Using C compiler: mpicxx -O3 -O3 -fPIC ${COPTFLAGS} ${CFLAGS}
Using Fortran compiler: mpif90 -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ${FOPTFLAGS} ${FFLAGS}
-----------------------------------------
Using include paths: -I/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/include -I/tmp/petsc-3.4.2.dfsg1/include -I/tmp/petsc-3.4.2.dfsg1/include -I/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/include -I/usr/include -I/usr/include/suitesparse -I/usr/include/scotch -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi
-----------------------------------------
Using C linker: mpicxx
Using Fortran linker: mpif90
Using libraries: -L/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/lib -L/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/lib -lpetsc -L/usr/lib -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lHYPRE_utilities -lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lcholmod -lumfpack -lamd -llapack -lblas -lX11 -lpthread -L/usr/lib/x86_64-linux-gnu -lfftw3 -lfftw3_mpi -lptesmumps -lptscotch -lptscotcherr -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -ldl -lmpi -lhwloc -lgcc_s -lpthread -ldl
-----------------------------------------
Raw
atlas-h0.1-Re100-np32-petscO3-without-inlining
Delaunizing vertices...
Delaunay seconds: 0.059259
Creating surface mesh ...
Surface mesh seconds: 0.015918
Recovering boundaries...
Boundary recovery seconds: 0.022167
Removing exterior tetrahedra ...
Exterior tets removal seconds: 0.003783
Recovering Delaunayness...
Delaunay recovery seconds: 0.016649
Optimizing mesh...
Optimization seconds: 0.01629
Writing nodes.
Writing elements.
Writing faces.
Writing edges.
Output seconds: 0.009521
Total running seconds: 0.144576
Statistics:
Input points: 4524
Input facets: 9044
Input segments: 13566
Input holes: 0
Input regions: 0
Mesh points: 4526
Mesh tetrahedra: 13825
Mesh faces: 32172
Mesh edges: 22872
Mesh faces on facets: 9044
Mesh edges on segments: 13566
Steiner points inside domain: 2
*** Created partitionFace -1 (11 15 )
*** Created partitionFace -2 (10 11 )
*** Created partitionFace -3 (16 15 )
*** Created partitionFace -4 (6 16 )
*** Created partitionFace -5 (7 6 )
*** Created partitionFace -6 (7 17 )
*** Created partitionFace -7 (17 22 )
*** Created partitionFace -8 (25 22 )
*** Created partitionFace -9 (26 25 )
*** Created partitionFace -10 (26 28 )
*** Created partitionFace -11 (31 28 )
*** Created partitionFace -12 (29 31 )
*** Created partitionFace -13 (29 24 )
*** Created partitionFace -14 (20 24 )
*** Created partitionFace -15 (3 20 )
*** Created partitionFace -16 (3 2 )
*** Created partitionFace -17 (13 2 )
*** Created partitionFace -18 (13 12 )
*** Created partitionFace -19 (12 10 )
*** Created partitionFace -20 (32 30 )
*** Created partitionFace -21 (24 30 )
*** Created partitionFace -22 (3 1 )
*** Created partitionFace -23 (13 1 )
*** Created partitionFace -24 (9 12 )
*** Created partitionFace -25 (11 9 )
*** Created partitionFace -26 (16 5 )
*** Created partitionFace -27 (7 5 )
*** Created partitionFace -28 (8 7 )
*** Created partitionFace -29 (18 8 )
*** Created partitionFace -30 (21 18 )
*** Created partitionFace -31 (21 25 )
*** Created partitionFace -32 (32 28 )
*** Created partitionFace -33 (31 32 )
*** Created partitionFace -34 (10 9 )
*** Created partitionFace -35 (15 14 )
*** Created partitionFace -36 (14 6 )
*** Created partitionFace -37 (2 6 )
*** Created partitionFace -38 (2 14 )
*** Created partitionFace -39 (2 7 )
*** Created partitionFace -40 (4 2 )
*** Created partitionFace -41 (4 17 )
*** Created partitionFace -42 (4 3 )
*** Created partitionFace -43 (17 3 )
*** Created partitionFace -44 (17 19 )
*** Created partitionFace -45 (19 3 )
*** Created partitionFace -46 (19 23 )
*** Created partitionFace -47 (23 22 )
*** Created partitionFace -48 (29 23 )
*** Created partitionFace -49 (29 22 )
*** Created partitionFace -50 (27 29 )
*** Created partitionFace -51 (22 27 )
*** Created partitionFace -52 (29 28 )
*** Created partitionFace -53 (28 27 )
*** Created partitionFace -54 (11 12 )
*** Created partitionFace -55 (14 11 )
*** Created partitionFace -56 (14 12 )
*** Created partitionFace -57 (23 24 )
*** Created partitionFace -58 (6 15 )
*** Created partitionFace -59 (20 19 )
*** Created partitionFace -60 (14 13 )
*** Created partitionFace -61 (25 27 )
*** Created partitionFace -62 (19 24 )
*** Created partitionFace -63 (23 17 )
*** Created partitionFace -64 (7 4 )
*** Created partitionFace -65 (1 2 )
*** Created partitionFace -66 (29 32 )
*** Created partitionFace -67 (30 29 )
*** Created partitionFace -68 (6 5 )
*** Created partitionFace -69 (6 8 )
*** Created partitionFace -70 (17 8 )
*** Created partitionFace -71 (18 17 )
*** Created partitionFace -72 (21 22 )
*** Created partitionFace -73 (21 17 )
*** Created partitionFace -74 (5 14 )
*** Created partitionFace -75 (1 5 )
*** Created partitionFace -76 (4 1 )
*** Created partitionFace -77 (4 5 )
*** Created partitionFace -78 (18 4 )
*** Created partitionFace -79 (4 19 )
*** Created partitionFace -80 (18 19 )
*** Created partitionFace -81 (21 23 )
*** Created partitionFace -82 (21 30 )
*** Created partitionFace -83 (23 30 )
*** Created partitionFace -84 (27 30 )
*** Created partitionFace -85 (30 28 )
*** Created partitionFace -86 (8 4 )
*** Created partitionFace -87 (15 5 )
*** Created partitionFace -88 (20 4 )
*** Created partitionFace -89 (1 14 )
*** Created partitionFace -90 (21 27 )
*** Created partitionFace -91 (18 23 )
*** Created partitionFace -92 (27 26 )
*** Created partitionFace -93 (30 31 )
*** Created partitionFace -94 (13 6 )
*** Created partitionFace -95 (5 13 )
*** Created partitionFace -96 (28 25 )
*** Created partitionFace -97 (11 13 )
*** Created partitionFace -98 (1 7 )
*** Created partitionFace -99 (1 6 )
*** Created partitionFace -100 (22 30 )
*** Created partitionFace -101 (23 27 )
*** Created partitionFace -102 (31 27 )
*** Created partitionFace -103 (18 22 )
Re FunctionSpace Velocity Pressure
100 240034 229620 10414
[blockns]
- cd: 1
- pcd: 1
- pcd.inflow: Robin
- pcd.outflow: Dirichlet
- pcd.order: 1
field increment
- type Dirichlet
. boundary inlet expr : {0,0,0}
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
field velocity
- type Dirichlet
. boundary inlet expr : {3*16*y*(1-y)*z*(1-z)/2,0,0}:y:z
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
[ - Setting up Precondition Blockns...] Time : 1.03932s
0 stokes KSP Residual norm 1.734978e+01
1 stokes KSP Residual norm 4.090486e-02
2 stokes KSP Residual norm 1.812641e-02
3 stokes KSP Residual norm 1.294650e-02
4 stokes KSP Residual norm 9.339569e-03
5 stokes KSP Residual norm 7.968890e-03
6 stokes KSP Residual norm 6.617434e-03
7 stokes KSP Residual norm 6.005999e-03
8 stokes KSP Residual norm 5.523548e-03
9 stokes KSP Residual norm 5.038802e-03
10 stokes KSP Residual norm 4.585217e-03
11 stokes KSP Residual norm 4.170907e-03
12 stokes KSP Residual norm 3.743832e-03
13 stokes KSP Residual norm 3.459721e-03
14 stokes KSP Residual norm 3.195387e-03
15 stokes KSP Residual norm 2.982186e-03
16 stokes KSP Residual norm 2.685370e-03
17 stokes KSP Residual norm 2.380192e-03
18 stokes KSP Residual norm 2.015213e-03
19 stokes KSP Residual norm 1.538676e-03
20 stokes KSP Residual norm 1.140745e-03
21 stokes KSP Residual norm 7.446614e-04
22 stokes KSP Residual norm 4.798987e-04
23 stokes KSP Residual norm 2.638593e-04
24 stokes KSP Residual norm 1.545907e-04
25 stokes KSP Residual norm 9.707556e-05
26 stokes KSP Residual norm 5.830843e-05
27 stokes KSP Residual norm 3.065779e-05
28 stokes KSP Residual norm 1.748443e-05
29 stokes KSP Residual norm 9.718554e-06
[ - Solving Stokes...] Time : 9.889022e+01s
[ - Exporting Stokes results...] Time : 9.401231e-01s
[ - Picard:: Assemble nonlinear terms ...] Time : 1.542183e+01s
[ - Picard:: Assemble BC ...] Time : 7.301252e+00s
Picard:: non linear iteration 0
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 2.392394e-02
2 picard KSP Residual norm 1.873200e-02
3 picard KSP Residual norm 1.192956e-02
4 picard KSP Residual norm 8.527264e-03
5 picard KSP Residual norm 5.619032e-03
6 picard KSP Residual norm 3.988848e-03
7 picard KSP Residual norm 2.310381e-03
8 picard KSP Residual norm 1.389977e-03
9 picard KSP Residual norm 6.567174e-04
10 picard KSP Residual norm 3.182589e-04
11 picard KSP Residual norm 1.424232e-04
12 picard KSP Residual norm 7.190688e-05
13 picard KSP Residual norm 4.337336e-05
14 picard KSP Residual norm 2.510076e-05
15 picard KSP Residual norm 1.474823e-05
[ - Picard:: Solve ...] Time : 5.615173e+01s
Iteration 1
. ||u-un|| = 1.568721e+00
. ||p-pn|| = 1.103301e+00
[ - Picard:: Assemble nonlinear terms ...] Time : 1.684048e+01s
[ - Picard:: Assemble BC ...] Time : 6.035608e+00s
Picard:: non linear iteration 1
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.868372e-02
2 picard KSP Residual norm 1.326410e-02
3 picard KSP Residual norm 7.543770e-03
4 picard KSP Residual norm 5.180069e-03
5 picard KSP Residual norm 3.824018e-03
6 picard KSP Residual norm 2.800287e-03
7 picard KSP Residual norm 2.031093e-03
8 picard KSP Residual norm 1.233982e-03
9 picard KSP Residual norm 6.776945e-04
10 picard KSP Residual norm 3.075312e-04
11 picard KSP Residual norm 1.389547e-04
12 picard KSP Residual norm 6.044734e-05
13 picard KSP Residual norm 3.469121e-05
14 picard KSP Residual norm 2.168879e-05
15 picard KSP Residual norm 1.421952e-05
[ - Picard:: Solve ...] Time : 6.316875e+01s
Iteration 2
. ||u-un|| = 1.248785e-01
. ||p-pn|| = 1.034040e-01
[ - Picard:: Assemble nonlinear terms ...] Time : 2.114321e+01s
[ - Picard:: Assemble BC ...] Time : 4.875160e+00s
Picard:: non linear iteration 2
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.761240e-02
2 picard KSP Residual norm 1.268466e-02
3 picard KSP Residual norm 7.359195e-03
4 picard KSP Residual norm 4.927440e-03
5 picard KSP Residual norm 3.513526e-03
6 picard KSP Residual norm 2.771251e-03
7 picard KSP Residual norm 1.983608e-03
8 picard KSP Residual norm 1.302378e-03
9 picard KSP Residual norm 6.823722e-04
10 picard KSP Residual norm 3.225530e-04
11 picard KSP Residual norm 1.470369e-04
12 picard KSP Residual norm 6.306661e-05
13 picard KSP Residual norm 3.535362e-05
14 picard KSP Residual norm 2.294144e-05
15 picard KSP Residual norm 1.455605e-05
[ - Picard:: Solve ...] Time : 8.501621e+01s
Iteration 3
. ||u-un|| = 4.577617e-02
. ||p-pn|| = 2.610073e-02
[ - Picard:: Assemble nonlinear terms ...] Time : 2.426715e+01s
[ - Picard:: Assemble BC ...] Time : 2.567371e+00s
Picard:: non linear iteration 3
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.739230e-02
2 picard KSP Residual norm 1.279106e-02
3 picard KSP Residual norm 7.563013e-03
4 picard KSP Residual norm 5.019778e-03
5 picard KSP Residual norm 3.566333e-03
6 picard KSP Residual norm 2.858904e-03
7 picard KSP Residual norm 2.009598e-03
8 picard KSP Residual norm 1.326777e-03
9 picard KSP Residual norm 6.928348e-04
10 picard KSP Residual norm 3.263705e-04
11 picard KSP Residual norm 1.468193e-04
12 picard KSP Residual norm 6.269751e-05
13 picard KSP Residual norm 3.430039e-05
14 picard KSP Residual norm 2.267919e-05
15 picard KSP Residual norm 1.477083e-05
[ - Picard:: Solve ...] Time : 9.903487e+01s
Iteration 4
. ||u-un|| = 1.376657e-02
. ||p-pn|| = 5.352503e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 1.499379e+01s
[ - Picard:: Assemble BC ...] Time : 7.293275e+00s
Picard:: non linear iteration 4
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736643e-02
2 picard KSP Residual norm 1.285900e-02
3 picard KSP Residual norm 7.628464e-03
4 picard KSP Residual norm 5.078258e-03
5 picard KSP Residual norm 3.618088e-03
6 picard KSP Residual norm 2.904486e-03
7 picard KSP Residual norm 2.033228e-03
8 picard KSP Residual norm 1.335387e-03
9 picard KSP Residual norm 6.985673e-04
10 picard KSP Residual norm 3.286931e-04
11 picard KSP Residual norm 1.473440e-04
12 picard KSP Residual norm 6.299601e-05
13 picard KSP Residual norm 3.452622e-05
14 picard KSP Residual norm 2.290472e-05
15 picard KSP Residual norm 1.493941e-05
[ - Picard:: Solve ...] Time : 5.200830e+01s
Iteration 5
. ||u-un|| = 3.943441e-03
. ||p-pn|| = 1.783221e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 1.504472e+01s
[ - Picard:: Assemble BC ...] Time : 7.236772e+00s
Picard:: non linear iteration 5
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736532e-02
2 picard KSP Residual norm 1.286803e-02
3 picard KSP Residual norm 7.632432e-03
4 picard KSP Residual norm 5.087455e-03
5 picard KSP Residual norm 3.628639e-03
6 picard KSP Residual norm 2.911984e-03
7 picard KSP Residual norm 2.038549e-03
8 picard KSP Residual norm 1.337151e-03
9 picard KSP Residual norm 6.995519e-04
10 picard KSP Residual norm 3.293820e-04
11 picard KSP Residual norm 1.476900e-04
12 picard KSP Residual norm 6.324622e-05
13 picard KSP Residual norm 3.481654e-05
14 picard KSP Residual norm 2.308836e-05
15 picard KSP Residual norm 1.499771e-05
[ - Picard:: Solve ...] Time : 5.065025e+01s
Iteration 6
. ||u-un|| = 1.055914e-03
. ||p-pn|| = 5.298421e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 1.501841e+01s
[ - Picard:: Assemble BC ...] Time : 7.301406e+00s
Picard:: non linear iteration 6
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736447e-02
2 picard KSP Residual norm 1.286535e-02
3 picard KSP Residual norm 7.629236e-03
4 picard KSP Residual norm 5.085702e-03
5 picard KSP Residual norm 3.627899e-03
6 picard KSP Residual norm 2.911064e-03
7 picard KSP Residual norm 2.038595e-03
8 picard KSP Residual norm 1.337300e-03
9 picard KSP Residual norm 6.993292e-04
10 picard KSP Residual norm 3.294038e-04
11 picard KSP Residual norm 1.477565e-04
12 picard KSP Residual norm 6.330262e-05
13 picard KSP Residual norm 3.489513e-05
14 picard KSP Residual norm 2.313281e-05
15 picard KSP Residual norm 1.500321e-05
[ - Picard:: Solve ...] Time : 5.616685e+01s
Iteration 7
. ||u-un|| = 2.311775e-04
. ||p-pn|| = 1.158964e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 1.990655e+01s
[ - Picard:: Assemble BC ...] Time : 2.816648e+00s
Picard:: non linear iteration 7
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736383e-02
2 picard KSP Residual norm 1.286417e-02
3 picard KSP Residual norm 7.628354e-03
4 picard KSP Residual norm 5.084717e-03
5 picard KSP Residual norm 3.627099e-03
6 picard KSP Residual norm 2.910455e-03
7 picard KSP Residual norm 2.038331e-03
8 picard KSP Residual norm 1.337275e-03
9 picard KSP Residual norm 6.991773e-04
10 picard KSP Residual norm 3.293510e-04
11 picard KSP Residual norm 1.477455e-04
12 picard KSP Residual norm 6.329998e-05
13 picard KSP Residual norm 3.489835e-05
14 picard KSP Residual norm 2.313400e-05
15 picard KSP Residual norm 1.500110e-05
[ - Picard:: Solve ...] Time : 5.427740e+01s
Iteration 8
. ||u-un|| = 5.205485e-05
. ||p-pn|| = 2.779906e-05
[ - Picard:: Assemble nonlinear terms ...] Time : 2.235887e+01s
[ - Picard:: Assemble BC ...] Time : 3.450895e+00s
Picard:: non linear iteration 8
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736362e-02
2 picard KSP Residual norm 1.286410e-02
3 picard KSP Residual norm 7.628398e-03
4 picard KSP Residual norm 5.084611e-03
5 picard KSP Residual norm 3.626979e-03
6 picard KSP Residual norm 2.910396e-03
7 picard KSP Residual norm 2.038283e-03
8 picard KSP Residual norm 1.337269e-03
9 picard KSP Residual norm 6.991479e-04
10 picard KSP Residual norm 3.293327e-04
11 picard KSP Residual norm 1.477368e-04
12 picard KSP Residual norm 6.329517e-05
13 picard KSP Residual norm 3.489442e-05
14 picard KSP Residual norm 2.313178e-05
15 picard KSP Residual norm 1.500030e-05
[ - Picard:: Solve ...] Time : 6.078307e+01s
Iteration 9
. ||u-un|| = 1.399472e-05
. ||p-pn|| = 6.133742e-06
************************************************************************************************************************
*** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document ***
************************************************************************************************************************
---------------------------------------------- PETSc Performance Summary: ----------------------------------------------
./feelpp_steady_ns_3d on a linux-gnu-c-opt named irma-atlas with 32 processors, by prudhomm Thu Feb 5 10:26:10 2015
Using Petsc Release Version 3.4.2, Jul, 02, 2013
Max Max/Min Avg Total
Time (sec): 9.254e+02 1.00000 9.254e+02
Objects: 1.413e+04 1.00000 1.413e+04
Flops: 1.509e+10 1.57096 1.187e+10 3.798e+11
Flops/sec: 1.631e+07 1.57096 1.282e+07 4.104e+08
MPI Messages: 3.425e+05 3.33202 2.253e+05 7.210e+06
MPI Message Lengths: 1.325e+09 2.18435 4.572e+03 3.297e+10
MPI Reductions: 6.755e+04 1.00000
Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract)
e.g., VecAXPY() for real vectors of length N --> 2N flops
and VecAXPY() for complex vectors of length N --> 8N flops
Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions --
Avg %Total Avg %Total counts %Total Avg %Total counts %Total
0: Main Stage: 9.2541e+02 100.0% 3.7976e+11 100.0% 7.210e+06 100.0% 4.572e+03 100.0% 6.755e+04 100.0%
------------------------------------------------------------------------------------------------------------------------
See the 'Profiling' chapter of the users' manual for details on interpreting output.
Phase summary info:
Count: number of times phase was executed
Time and Flops: Max - maximum over all processors
Ratio - ratio of maximum to minimum over all processors
Mess: number of messages sent
Avg. len: average message length (bytes)
Reduct: number of global reductions
Global: entire computation
Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop().
%T - percent time in this phase %f - percent flops in this phase
%M - percent messages in this phase %L - percent message lengths in this phase
%R - percent reductions in this phase
Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors)
------------------------------------------------------------------------------------------------------------------------
Event Count Time (sec) Flops --- Global --- --- Stage --- Total
Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %f %M %L %R %T %f %M %L %R Mflop/s
------------------------------------------------------------------------------------------------------------------------
--- Event Stage 0: Main Stage
VecDotNorm2 164 1.0 4.1775e-01 1.9 5.87e+06 1.4 0.0e+00 0.0e+00 1.6e+02 0 0 0 0 0 0 0 0 0 0 377
VecMDot 22556 1.0 1.6910e+02 3.3 7.38e+08 1.4 0.0e+00 0.0e+00 1.1e+04 12 5 0 0 16 12 5 0 0 16 117
VecNorm 34756 1.0 9.0863e+01 8.6 2.76e+08 1.6 0.0e+00 0.0e+00 1.2e+04 5 2 0 0 17 5 2 0 0 17 77
VecScale 35034 1.0 1.4004e-01 1.3 1.39e+08 1.6 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 25035
VecCopy 35228 1.0 8.7318e-01 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecSet 51216 1.0 6.2935e-01 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecAXPY 12786 1.0 2.1390e-01 1.6 1.17e+08 1.7 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 13569
VecAYPX 10 1.0 6.5875e-04 3.1 8.94e+04 1.4 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3644
VecMAXPY 34850 1.0 1.4959e+00 2.4 9.19e+08 1.4 0.0e+00 0.0e+00 0.0e+00 0 6 0 0 0 0 6 0 0 0 16456
VecAssemblyBegin 7669 1.0 9.4297e+00 1.1 0.00e+00 0.0 5.4e+05 1.4e+03 2.3e+04 1 0 8 2 34 1 0 8 2 34 0
VecAssemblyEnd 7669 1.0 1.0821e-01 6.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecScatterBegin 42609 1.0 1.9394e+00 2.4 0.00e+00 0.0 5.7e+06 1.5e+03 0.0e+00 0 0 79 26 0 0 0 79 26 0 0
VecScatterEnd 42609 1.0 1.6598e+0217.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 9 0 0 0 0 9 0 0 0 0 0
VecNormalize 34582 1.0 9.0725e+01 8.6 4.09e+08 1.6 0.0e+00 0.0e+00 1.2e+04 5 3 0 0 17 5 3 0 0 17 114
MatMult 22730 1.0 5.0457e+01 1.9 1.21e+10 1.6 2.4e+06 1.5e+03 0.0e+00 4 80 33 11 0 4 80 33 11 0 5993
MatMultAdd 328 1.0 1.5690e-01 1.8 2.37e+07 1.4 7.0e+04 2.8e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 4034
MatSolve 23048 1.0 2.3524e+02 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 19 0 0 0 0 19 0 0 0 0 0
MatLUFactorSym 12 1.0 1.5340e+00 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatLUFactorNum 504 1.0 2.6807e+02 2.8 8.22e+08 2.3 0.0e+00 0.0e+00 0.0e+00 19 5 0 0 0 19 5 0 0 0 70
MatILUFactorSym 12 1.0 1.4670e-01 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 0 0 0 0 0 0 0
MatAssemblyBegin 2451 1.0 6.0854e+01 2.1 0.00e+00 0.0 6.8e+03 1.4e+05 3.9e+03 5 0 0 3 6 5 0 0 3 6 0
MatAssemblyEnd 2451 1.0 2.6921e+00 1.9 0.00e+00 0.0 1.1e+04 9.0e+02 2.1e+02 0 0 0 0 0 0 0 0 0 0 0
MatGetRowIJ 24 1.0 4.2584e-02 2.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatGetSubMatrice 492 1.0 2.6469e+01 2.0 0.00e+00 0.0 5.2e+05 4.3e+04 1.5e+03 2 0 7 68 2 2 0 7 68 2 0
MatGetOrdering 24 1.0 1.1362e-01 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 8.8e+01 0 0 0 0 0 0 0 0 0 0 0
MatIncreaseOvrlp 12 1.0 6.3753e-02 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 2.4e+01 0 0 0 0 0 0 0 0 0 0 0
MatZeroEntries 44 1.0 9.8839e-02 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatAXPY 10 1.0 1.4060e-01 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
KSPGMRESOrthog 22402 1.0 1.6916e+02 3.3 1.43e+09 1.4 0.0e+00 0.0e+00 1.1e+04 12 10 0 0 16 12 10 0 0 16 226
KSPSetUp 994 1.0 2.0069e-01 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+02 0 0 0 0 0 0 0 0 0 0 0
KSPSolve 10 1.0 6.6226e+02 1.0 1.51e+10 1.6 7.1e+06 4.5e+03 6.5e+04 72100 99 97 96 72100 99 97 96 573
PCSetUp 502 1.0 2.9241e+02 2.6 8.22e+08 2.3 5.3e+05 4.2e+04 2.0e+03 21 5 7 68 3 21 5 7 68 3 64
PCApply 164 1.0 6.5870e+02 1.0 1.47e+10 1.6 7.1e+06 4.5e+03 6.4e+04 71 97 98 96 95 71 97 98 96 95 561
------------------------------------------------------------------------------------------------------------------------
Memory usage is given in bytes:
Object Type Creations Destructions Memory Descendants' Mem.
Reports information only for process 0.
--- Event Stage 0: Main Stage
Vector 6029 6029 279139944 0
Vector Scatter 1976 1976 2126176 0
Index Set 4256 4256 40930572 0
IS L to G Mapping 1662 1662 26934080 0
Matrix 127 127 578997996 0
Krylov Solver 34 34 452992 0
Preconditioner 46 46 46672 0
Viewer 1 0 0 0
========================================================================================================================
Average time to get PetscTime(): 9.53674e-08
Average time for MPI_Barrier(): 1.4782e-05
Average time for zero size MPI_Send(): 1.04085e-05
#PETSc Option Table entries:
--mu=0.02
-log_summary
#End of PETSc Option Table entries
Compiled without FORTRAN kernels
Compiled with full precision matrices (default)
sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4
Configure run at: Thu Feb 5 09:07:19 2015
Configure options: --with-shared-libraries --with-debugging=0 --useThreads 0 --with-clanguage=C++ --with-c-support --with-fortran-interfaces=1 --with-mpi-dir=/usr/lib/openmpi --with-mpi-shared=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-blacs=1 --with-blacs-include=/usr/include --with-blacs-lib="[/usr/lib/libblacsCinit-openmpi.so,/usr/lib/libblacs-openmpi.so]" --with-scalapack=1 --with-scalapack-include=/usr/include --with-scalapack-lib=/usr/lib/libscalapack-openmpi.so --with-mumps=1 --with-mumps-include=/usr/include --with-mumps-lib="[/usr/lib/libdmumps.so,/usr/lib/libzmumps.so,/usr/lib/libsmumps.so,/usr/lib/libcmumps.so,/usr/lib/libmumps_common.so,/usr/lib/libpord.so]" --with-umfpack=1 --with-umfpack-include=/usr/include/suitesparse --with-umfpack-lib="[/usr/lib/libumfpack.so,/usr/lib/libamd.so]" --with-cholmod=1 --with-cholmod-include=/usr/include/suitesparse --with-cholmod-lib=/usr/lib/libcholmod.so --with-spooles=1 --with-spooles-include=/usr/include/spooles --with-spooles-lib=/usr/lib/libspooles.so --with-hypre=1 --with-hypre-dir=/usr --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="[/usr/lib/libptesmumps.so,/usr/lib/libptscotch.so,/usr/lib/libptscotcherr.so]" --with-fftw=1 --with-fftw-include=/usr/include --with-fftw-lib="[/usr/lib/x86_64-linux-gnu/libfftw3.so,/usr/lib/x86_64-linux-gnu/libfftw3_mpi.so]" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --CXXFLAGS=-O3 --CFLAGS=-O3 --CXXOPTFLAGS=-O3 -COPTFLAGS=-O3
-----------------------------------------
Libraries compiled on Thu Feb 5 09:07:19 2015 on irma-atlas
Machine characteristics: Linux-3.2.0-4-amd64-x86_64-with-debian-8.0
Using PETSc directory: /tmp/petsc-3.4.2.dfsg1
Using PETSc arch: linux-gnu-c-opt
-----------------------------------------
Using C compiler: mpicxx -O3 -O3 -fPIC ${COPTFLAGS} ${CFLAGS}
Using Fortran compiler: mpif90 -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O ${FOPTFLAGS} ${FFLAGS}
-----------------------------------------
Using include paths: -I/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/include -I/tmp/petsc-3.4.2.dfsg1/include -I/tmp/petsc-3.4.2.dfsg1/include -I/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/include -I/usr/include -I/usr/include/suitesparse -I/usr/include/scotch -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi
-----------------------------------------
Using C linker: mpicxx
Using Fortran linker: mpif90
Using libraries: -L/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/lib -L/tmp/petsc-3.4.2.dfsg1/linux-gnu-c-opt/lib -lpetsc -L/usr/lib -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lHYPRE_utilities -lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lcholmod -lumfpack -lamd -llapack -lblas -lX11 -lpthread -L/usr/lib/x86_64-linux-gnu -lfftw3 -lfftw3_mpi -lptesmumps -lptscotch -lptscotcherr -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.9 -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -ldl -lmpi -lhwloc -lgcc_s -lpthread -ldl
-----------------------------------------
Raw
curie-h0.1-Re100-np32-petscO2
Delaunizing vertices...
Delaunay seconds: 0.09
Creating surface mesh ...
Surface mesh seconds: 0.01
Recovering boundaries...
Boundary recovery seconds: 0.02
Removing exterior tetrahedra ...
Exterior tets removal seconds: 0.01
Recovering Delaunayness...
Delaunay recovery seconds: 0.02
Optimizing mesh...
Optimization seconds: 0.02
Writing nodes.
Writing elements.
Writing faces.
Writing edges.
Output seconds: 0.01
Total running seconds: 0.18
Statistics:
Input points: 4529
Input facets: 9054
Input segments: 13581
Input holes: 0
Input regions: 0
Mesh points: 4534
Mesh tetrahedra: 13780
Mesh faces: 32087
Mesh edges: 22840
Mesh faces on facets: 9054
Mesh edges on segments: 13581
Steiner points inside domain: 5
*** Created partitionFace -1 (10 13 )
*** Created partitionFace -2 (14 10 )
*** Created partitionFace -3 (10 12 )
*** Created partitionFace -4 (4 13 )
*** Created partitionFace -5 (1 4 )
*** Created partitionFace -6 (1 19 )
*** Created partitionFace -7 (18 19 )
*** Created partitionFace -8 (18 29 )
*** Created partitionFace -9 (29 31 )
*** Created partitionFace -10 (27 31 )
*** Created partitionFace -11 (25 27 )
*** Created partitionFace -12 (25 24 )
*** Created partitionFace -13 (24 5 )
*** Created partitionFace -14 (7 5 )
*** Created partitionFace -15 (16 7 )
*** Created partitionFace -16 (16 9 )
*** Created partitionFace -17 (9 12 )
*** Created partitionFace -18 (26 28 )
*** Created partitionFace -19 (26 21 )
*** Created partitionFace -20 (21 23 )
*** Created partitionFace -21 (6 23 )
*** Created partitionFace -22 (7 6 )
*** Created partitionFace -23 (9 11 )
*** Created partitionFace -24 (10 11 )
*** Created partitionFace -25 (3 14 )
*** Created partitionFace -26 (2 3 )
*** Created partitionFace -27 (2 19 )
*** Created partitionFace -28 (19 17 )
*** Created partitionFace -29 (30 17 )
*** Created partitionFace -30 (31 30 )
*** Created partitionFace -31 (31 28 )
*** Created partitionFace -32 (27 28 )
*** Created partitionFace -33 (11 12 )
*** Created partitionFace -34 (14 13 )
*** Created partitionFace -35 (29 30 )
*** Created partitionFace -36 (10 15 )
*** Created partitionFace -37 (13 15 )
*** Created partitionFace -38 (15 8 )
*** Created partitionFace -39 (4 8 )
*** Created partitionFace -40 (4 15 )
*** Created partitionFace -41 (16 8 )
*** Created partitionFace -42 (15 16 )
*** Created partitionFace -43 (5 8 )
*** Created partitionFace -44 (1 8 )
*** Created partitionFace -45 (1 5 )
*** Created partitionFace -46 (5 22 )
*** Created partitionFace -47 (20 1 )
*** Created partitionFace -48 (20 22 )
*** Created partitionFace -49 (23 22 )
*** Created partitionFace -50 (22 21 )
*** Created partitionFace -51 (20 21 )
*** Created partitionFace -52 (18 21 )
*** Created partitionFace -53 (25 18 )
*** Created partitionFace -54 (32 25 )
*** Created partitionFace -55 (10 9 )
*** Created partitionFace -56 (20 18 )
*** Created partitionFace -57 (27 32 )
*** Created partitionFace -58 (32 31 )
*** Created partitionFace -59 (21 24 )
*** Created partitionFace -60 (21 25 )
*** Created partitionFace -61 (20 19 )
*** Created partitionFace -62 (23 5 )
*** Created partitionFace -63 (24 23 )
*** Created partitionFace -64 (32 18 )
*** Created partitionFace -65 (29 32 )
*** Created partitionFace -66 (9 15 )
*** Created partitionFace -67 (8 7 )
*** Created partitionFace -68 (6 5 )
*** Created partitionFace -69 (26 25 )
*** Created partitionFace -70 (27 26 )
*** Created partitionFace -71 (3 13 )
*** Created partitionFace -72 (3 4 )
*** Created partitionFace -73 (2 1 )
*** Created partitionFace -74 (2 4 )
*** Created partitionFace -75 (18 17 )
*** Created partitionFace -76 (18 30 )
*** Created partitionFace -77 (15 14 )
*** Created partitionFace -78 (3 8 )
*** Created partitionFace -79 (3 15 )
*** Created partitionFace -80 (6 8 )
*** Created partitionFace -81 (2 6 )
*** Created partitionFace -82 (8 2 )
*** Created partitionFace -83 (22 2 )
*** Created partitionFace -84 (22 32 )
*** Created partitionFace -85 (26 32 )
*** Created partitionFace -86 (26 22 )
*** Created partitionFace -87 (26 31 )
*** Created partitionFace -88 (17 22 )
*** Created partitionFace -89 (20 17 )
*** Created partitionFace -90 (20 2 )
*** Created partitionFace -91 (17 32 )
*** Created partitionFace -92 (30 32 )
*** Created partitionFace -93 (23 2 )
*** Created partitionFace -94 (5 2 )
*** Created partitionFace -95 (25 17 )
*** Created partitionFace -96 (14 4 )
*** Created partitionFace -97 (6 22 )
*** Created partitionFace -98 (1 22 )
*** Created partitionFace -99 (16 10 )
*** Created partitionFace -100 (22 25 )
*** Created partitionFace -101 (17 21 )
*** Created partitionFace -102 (28 25 )
*** Created partitionFace -103 (28 32 )
Re FunctionSpace Velocity Pressure
100 239484 229092 10392
[blockns]
- cd: 1
- pcd: 1
- pcd.inflow: Robin
- pcd.outflow: Dirichlet
- pcd.order: 1
field increment
- type Dirichlet
. boundary inlet expr : {0,0,0}
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
field velocity
- type Dirichlet
. boundary inlet expr : {3*16*y*(1-y)*z*(1-z)/2,0,0}:y:z
. boundary wall expr : {0,0,0}
- type Neumann
. boundary outlet expr :
[ - Setting up Precondition Blockns...] Time : 1.01043s
0 stokes KSP Residual norm 1.734978e+01
1 stokes KSP Residual norm 4.090975e-02
2 stokes KSP Residual norm 1.801309e-02
3 stokes KSP Residual norm 1.292565e-02
4 stokes KSP Residual norm 9.333832e-03
5 stokes KSP Residual norm 7.964002e-03
6 stokes KSP Residual norm 6.605632e-03
7 stokes KSP Residual norm 5.993615e-03
8 stokes KSP Residual norm 5.515874e-03
9 stokes KSP Residual norm 5.040458e-03
10 stokes KSP Residual norm 4.592253e-03
11 stokes KSP Residual norm 4.184106e-03
12 stokes KSP Residual norm 3.752899e-03
13 stokes KSP Residual norm 3.464933e-03
14 stokes KSP Residual norm 3.197069e-03
15 stokes KSP Residual norm 2.979834e-03
16 stokes KSP Residual norm 2.680141e-03
17 stokes KSP Residual norm 2.375938e-03
18 stokes KSP Residual norm 2.013469e-03
19 stokes KSP Residual norm 1.540896e-03
20 stokes KSP Residual norm 1.141278e-03
21 stokes KSP Residual norm 7.412223e-04
22 stokes KSP Residual norm 4.816193e-04
23 stokes KSP Residual norm 2.650196e-04
24 stokes KSP Residual norm 1.553874e-04
25 stokes KSP Residual norm 9.758769e-05
26 stokes KSP Residual norm 5.819185e-05
27 stokes KSP Residual norm 3.089194e-05
28 stokes KSP Residual norm 1.766580e-05
29 stokes KSP Residual norm 9.943449e-06
[ - Solving Stokes...] Time : 4.651548e+01s
[ - Exporting Stokes results...] Time : 2.827488e+00s
[ - Picard:: Assemble nonlinear terms ...] Time : 1.047259e+00s
[ - Picard:: Assemble BC ...] Time : 5.631399e-02s
Picard:: non linear iteration 0
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 2.384387e-02
2 picard KSP Residual norm 1.861814e-02
3 picard KSP Residual norm 1.185765e-02
4 picard KSP Residual norm 8.491221e-03
5 picard KSP Residual norm 5.628793e-03
6 picard KSP Residual norm 3.995053e-03
7 picard KSP Residual norm 2.315319e-03
8 picard KSP Residual norm 1.392494e-03
9 picard KSP Residual norm 6.529957e-04
10 picard KSP Residual norm 3.198308e-04
11 picard KSP Residual norm 1.416447e-04
12 picard KSP Residual norm 7.223612e-05
13 picard KSP Residual norm 4.313319e-05
14 picard KSP Residual norm 2.522442e-05
15 picard KSP Residual norm 1.481067e-05
[ - Picard:: Solve ...] Time : 2.443257e+01s
Iteration 1
. ||u-un|| = 1.568671e+00
. ||p-pn|| = 1.103273e+00
[ - Picard:: Assemble nonlinear terms ...] Time : 9.948828e-01s
[ - Picard:: Assemble BC ...] Time : 5.871010e-02s
Picard:: non linear iteration 1
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.870552e-02
2 picard KSP Residual norm 1.330580e-02
3 picard KSP Residual norm 7.560803e-03
4 picard KSP Residual norm 5.153187e-03
5 picard KSP Residual norm 3.818467e-03
6 picard KSP Residual norm 2.802231e-03
7 picard KSP Residual norm 2.033826e-03
8 picard KSP Residual norm 1.237474e-03
9 picard KSP Residual norm 6.794827e-04
10 picard KSP Residual norm 3.129864e-04
11 picard KSP Residual norm 1.398612e-04
12 picard KSP Residual norm 6.109398e-05
13 picard KSP Residual norm 3.487312e-05
14 picard KSP Residual norm 2.205485e-05
15 picard KSP Residual norm 1.456987e-05
[ - Picard:: Solve ...] Time : 2.474801e+01s
Iteration 2
. ||u-un|| = 1.247469e-01
. ||p-pn|| = 1.033048e-01
[ - Picard:: Assemble nonlinear terms ...] Time : 1.024750e+00s
[ - Picard:: Assemble BC ...] Time : 5.579996e-02s
Picard:: non linear iteration 2
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.761037e-02
2 picard KSP Residual norm 1.271012e-02
3 picard KSP Residual norm 7.387028e-03
4 picard KSP Residual norm 4.920666e-03
5 picard KSP Residual norm 3.507718e-03
6 picard KSP Residual norm 2.770145e-03
7 picard KSP Residual norm 1.989831e-03
8 picard KSP Residual norm 1.307361e-03
9 picard KSP Residual norm 6.812138e-04
10 picard KSP Residual norm 3.233446e-04
11 picard KSP Residual norm 1.471151e-04
12 picard KSP Residual norm 6.350498e-05
13 picard KSP Residual norm 3.545932e-05
14 picard KSP Residual norm 2.325528e-05
15 picard KSP Residual norm 1.481695e-05
[ - Picard:: Solve ...] Time : 2.483829e+01s
Iteration 3
. ||u-un|| = 4.572281e-02
. ||p-pn|| = 2.608048e-02
[ - Picard:: Assemble nonlinear terms ...] Time : 1.032954e+00s
[ - Picard:: Assemble BC ...] Time : 5.628490e-02s
Picard:: non linear iteration 3
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.738971e-02
2 picard KSP Residual norm 1.281244e-02
3 picard KSP Residual norm 7.591838e-03
4 picard KSP Residual norm 5.013408e-03
5 picard KSP Residual norm 3.560140e-03
6 picard KSP Residual norm 2.857461e-03
7 picard KSP Residual norm 2.017109e-03
8 picard KSP Residual norm 1.332352e-03
9 picard KSP Residual norm 6.921285e-04
10 picard KSP Residual norm 3.264766e-04
11 picard KSP Residual norm 1.466362e-04
12 picard KSP Residual norm 6.316514e-05
13 picard KSP Residual norm 3.439029e-05
14 picard KSP Residual norm 2.296407e-05
15 picard KSP Residual norm 1.500564e-05
[ - Picard:: Solve ...] Time : 2.486206e+01s
Iteration 4
. ||u-un|| = 1.375559e-02
. ||p-pn|| = 5.345756e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 1.039618e+00s
[ - Picard:: Assemble BC ...] Time : 5.894303e-02s
Picard:: non linear iteration 4
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736640e-02
2 picard KSP Residual norm 1.288064e-02
3 picard KSP Residual norm 7.657317e-03
4 picard KSP Residual norm 5.071075e-03
5 picard KSP Residual norm 3.611924e-03
6 picard KSP Residual norm 2.903224e-03
7 picard KSP Residual norm 2.041054e-03
8 picard KSP Residual norm 1.341393e-03
9 picard KSP Residual norm 6.982035e-04
10 picard KSP Residual norm 3.289483e-04
11 picard KSP Residual norm 1.472108e-04
12 picard KSP Residual norm 6.349949e-05
13 picard KSP Residual norm 3.461818e-05
14 picard KSP Residual norm 2.319302e-05
15 picard KSP Residual norm 1.517470e-05
[ - Picard:: Solve ...] Time : 2.489048e+01s
Iteration 5
. ||u-un|| = 3.939408e-03
. ||p-pn|| = 1.777339e-03
[ - Picard:: Assemble nonlinear terms ...] Time : 1.041796e+00s
[ - Picard:: Assemble BC ...] Time : 5.797291e-02s
Picard:: non linear iteration 5
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736637e-02
2 picard KSP Residual norm 1.289005e-02
3 picard KSP Residual norm 7.661416e-03
4 picard KSP Residual norm 5.080173e-03
5 picard KSP Residual norm 3.622557e-03
6 picard KSP Residual norm 2.910810e-03
7 picard KSP Residual norm 2.046395e-03
8 picard KSP Residual norm 1.343252e-03
9 picard KSP Residual norm 6.992236e-04
10 picard KSP Residual norm 3.297327e-04
11 picard KSP Residual norm 1.475996e-04
12 picard KSP Residual norm 6.376088e-05
13 picard KSP Residual norm 3.490956e-05
14 picard KSP Residual norm 2.338273e-05
15 picard KSP Residual norm 1.523593e-05
[ - Picard:: Solve ...] Time : 2.489012e+01s
Iteration 6
. ||u-un|| = 1.054539e-03
. ||p-pn|| = 5.284554e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 1.046638e+00s
[ - Picard:: Assemble BC ...] Time : 6.052899e-02s
Picard:: non linear iteration 6
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736567e-02
2 picard KSP Residual norm 1.288743e-02
3 picard KSP Residual norm 7.658278e-03
4 picard KSP Residual norm 5.078482e-03
5 picard KSP Residual norm 3.621854e-03
6 picard KSP Residual norm 2.909911e-03
7 picard KSP Residual norm 2.046434e-03
8 picard KSP Residual norm 1.343398e-03
9 picard KSP Residual norm 6.989801e-04
10 picard KSP Residual norm 3.297733e-04
11 picard KSP Residual norm 1.476766e-04
12 picard KSP Residual norm 6.381744e-05
13 picard KSP Residual norm 3.498817e-05
14 picard KSP Residual norm 2.342909e-05
15 picard KSP Residual norm 1.524234e-05
[ - Picard:: Solve ...] Time : 2.490158e+01s
Iteration 7
. ||u-un|| = 2.309835e-04
. ||p-pn|| = 1.155715e-04
[ - Picard:: Assemble nonlinear terms ...] Time : 1.050178e+00s
[ - Picard:: Assemble BC ...] Time : 5.818820e-02s
Picard:: non linear iteration 7
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736500e-02
2 picard KSP Residual norm 1.288625e-02
3 picard KSP Residual norm 7.657403e-03
4 picard KSP Residual norm 5.077525e-03
5 picard KSP Residual norm 3.621061e-03
6 picard KSP Residual norm 2.909306e-03
7 picard KSP Residual norm 2.046170e-03
8 picard KSP Residual norm 1.343367e-03
9 picard KSP Residual norm 6.988199e-04
10 picard KSP Residual norm 3.297197e-04
11 picard KSP Residual norm 1.476657e-04
12 picard KSP Residual norm 6.381390e-05
13 picard KSP Residual norm 3.499128e-05
14 picard KSP Residual norm 2.343042e-05
15 picard KSP Residual norm 1.524026e-05
[ - Picard:: Solve ...] Time : 2.491040e+01s
Iteration 8
. ||u-un|| = 5.190779e-05
. ||p-pn|| = 2.763738e-05
[ - Picard:: Assemble nonlinear terms ...] Time : 1.055399e+00s
[ - Picard:: Assemble BC ...] Time : 5.778098e-02s
Picard:: non linear iteration 8
0 picard KSP Residual norm 1.734978e+01
1 picard KSP Residual norm 1.736478e-02
2 picard KSP Residual norm 1.288616e-02
3 picard KSP Residual norm 7.657444e-03
4 picard KSP Residual norm 5.077421e-03
5 picard KSP Residual norm 3.620941e-03
6 picard KSP Residual norm 2.909247e-03
7 picard KSP Residual norm 2.046124e-03
8 picard KSP Residual norm 1.343361e-03
9 picard KSP Residual norm 6.987896e-04
10 picard KSP Residual norm 3.297001e-04
11 picard KSP Residual norm 1.476564e-04
12 picard KSP Residual norm 6.380884e-05
13 picard KSP Residual norm 3.498733e-05
14 picard KSP Residual norm 2.342814e-05
15 picard KSP Residual norm 1.523940e-05
[ - Picard:: Solve ...] Time : 2.557248e+01s
Iteration 9
. ||u-un|| = 1.393314e-05
. ||p-pn|| = 6.090052e-06
************************************************************************************************************************
*** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document ***
************************************************************************************************************************
---------------------------------------------- PETSc Performance Summary: ----------------------------------------------
feelpp_steady_ns_3d on a linux-gnu-intel named curie5712 with 32 processors, by prudhomc Wed Feb 4 12:34:21 2015
Using Petsc Release Version 3.5.1, Jul, 24, 2014
Max Max/Min Avg Total
Time (sec): 3.185e+02 1.00000 3.185e+02
Objects: 1.416e+04 1.00000 1.416e+04
Flops: 1.554e+10 1.78471 1.175e+10 3.762e+11
Flops/sec: 4.880e+07 1.78471 3.691e+07 1.181e+09
MPI Messages: 3.889e+05 3.77279 2.340e+05 7.487e+06
MPI Message Lengths: 1.382e+09 2.51177 4.396e+03 3.291e+10
MPI Reductions: 6.527e+04 1.00000
Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract)
e.g., VecAXPY() for real vectors of length N --> 2N flops
and VecAXPY() for complex vectors of length N --> 8N flops
Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions --
Avg %Total Avg %Total counts %Total Avg %Total counts %Total
0: Main Stage: 3.1851e+02 100.0% 3.7616e+11 100.0% 7.487e+06 100.0% 4.396e+03 100.0% 6.527e+04 100.0%
------------------------------------------------------------------------------------------------------------------------
See the 'Profiling' chapter of the users' manual for details on interpreting output.
Phase summary info:
Count: number of times phase was executed
Time and Flops: Max - maximum over all processors
Ratio - ratio of maximum to minimum over all processors
Mess: number of messages sent
Avg. len: average message length (bytes)
Reduct: number of global reductions
Global: entire computation
Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop().
%T - percent time in this phase %F - percent flops in this phase
%M - percent messages in this phase %L - percent message lengths in this phase
%R - percent reductions in this phase
Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors)
------------------------------------------------------------------------------------------------------------------------
Event Count Time (sec) Flops --- Global --- --- Stage --- Total
Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s
------------------------------------------------------------------------------------------------------------------------
--- Event Stage 0: Main Stage
VecDotNorm2 164 1.0 2.5225e-02 2.5 5.82e+06 1.6 0.0e+00 0.0e+00 1.6e+02 0 0 0 0 0 0 0 0 0 0 6228
VecMDot 22620 1.0 6.1474e+0156.8 7.36e+08 1.6 0.0e+00 0.0e+00 1.1e+04 12 5 0 0 17 12 5 0 0 17 318
VecNorm 34852 1.0 3.9309e+0157.2 2.85e+08 1.8 0.0e+00 0.0e+00 1.2e+04 5 2 0 0 18 5 2 0 0 18 175
VecScale 35130 1.0 8.1051e-02 1.4 1.43e+08 1.8 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 42867
VecCopy 35324 1.0 2.3832e-01 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecSet 51344 1.0 1.8575e-01 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecAXPY 12818 1.0 7.6107e-02 1.3 1.21e+08 1.8 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 37811
VecAYPX 10 1.0 1.7643e-04 1.7 8.87e+04 1.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 13574
VecMAXPY 34946 1.0 5.6484e-01 1.6 9.19e+08 1.6 0.0e+00 0.0e+00 0.0e+00 0 6 0 0 0 0 6 0 0 0 43066
VecAssemblyBegin 7669 1.0 1.1512e+00 1.6 0.00e+00 0.0 5.7e+05 1.4e+03 2.3e+04 0 0 8 2 35 0 0 8 2 35 0
VecAssemblyEnd 7669 1.0 2.3728e-02 3.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
VecScatterBegin 42705 1.0 5.3491e-01 1.8 0.00e+00 0.0 5.9e+06 1.4e+03 0.0e+00 0 0 79 26 0 0 0 79 26 0 0
VecScatterEnd 42705 1.0 7.1199e+01148.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 11 0 0 0 0 11 0 0 0 0 0
VecNormalize 34678 1.0 3.9394e+0150.1 4.22e+08 1.8 0.0e+00 0.0e+00 1.2e+04 5 3 0 0 18 5 3 0 0 18 259
MatMult 22794 1.0 1.3296e+01 1.5 1.24e+10 1.8 2.5e+06 1.5e+03 0.0e+00 3 80 33 11 0 3 80 33 11 0 22520
MatMultAdd 328 1.0 5.0502e-02 1.8 2.39e+07 1.6 7.2e+04 2.7e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 12502
MatSolve 23112 1.0 1.1842e+02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 26 0 0 0 0 26 0 0 0 0 0
MatLUFactorSym 12 1.0 1.3655e+00 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatLUFactorNum 504 1.0 1.0775e+02 3.0 8.97e+08 2.4 0.0e+00 0.0e+00 0.0e+00 20 5 0 0 0 20 5 0 0 0 175
MatILUFactorSym 12 1.0 8.9298e-02 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatAssemblyBegin 2451 1.0 2.5462e+00 4.2 0.00e+00 0.0 7.1e+03 1.3e+05 3.9e+03 1 0 0 3 6 1 0 0 3 6 0
MatAssemblyEnd 2451 1.0 1.2394e+00 1.8 0.00e+00 0.0 1.1e+04 8.6e+02 2.1e+02 0 0 0 0 0 0 0 0 0 0 0
MatGetRowIJ 24 1.0 1.8124e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatGetSubMatrice 492 1.0 1.7096e+01 2.2 0.00e+00 0.0 5.4e+05 4.2e+04 1.5e+03 3 0 7 68 2 3 0 7 68 2 0
MatGetOrdering 24 1.0 8.7119e-02 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatIncreaseOvrlp 12 1.0 4.0219e-02 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 1.2e+01 0 0 0 0 0 0 0 0 0 0 0
MatZeroEntries 44 1.0 3.0088e-02 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
MatAXPY 10 1.0 6.2586e-02 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
SFSetGraph 31 1.0 8.8072e-04 2.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
SFReduceBegin 31 1.0 2.3744e-03 1.5 0.00e+00 0.0 4.2e+03 1.1e+03 3.1e+01 0 0 0 0 0 0 0 0 0 0 0
SFReduceEnd 31 1.0 1.2612e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0
KSPGMRESOrthog 22466 1.0 6.1769e+0143.2 1.42e+09 1.6 0.0e+00 0.0e+00 1.1e+04 12 10 0 0 17 12 10 0 0 17 611
KSPSetUp 994 1.0 6.6819e-02 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 2.0e+01 0 0 0 0 0 0 0 0 0 0 0
KSPSolve 10 1.0 2.6181e+02 1.0 1.55e+10 1.8 7.4e+06 4.3e+03 6.3e+04 82100 99 97 96 82100 99 97 96 1437
PCSetUp 502 1.0 1.2361e+02 2.6 8.97e+08 2.4 5.5e+05 4.1e+04 1.7e+03 24 5 7 69 3 24 5 7 69 3 152
PCApply 164 1.0 2.6131e+02 1.0 1.52e+10 1.8 7.4e+06 4.3e+03 6.2e+04 82 97 98 96 95 82 97 98 96 95 1401
------------------------------------------------------------------------------------------------------------------------
Memory usage is given in bytes:
Object Type Creations Destructions Memory Descendants' Mem.
Reports information only for process 0.
--- Event Stage 0: Main Stage
Vector 6029 6029 278450728 0
Vector Scatter 1976 1976 65754608 0
Index Set 4256 4256 41714136 0
IS L to G Mapping 1662 1662 29387976 0
Matrix 127 127 598378348 0
Star Forest Bipartite Graph 31 31 27032 0
Krylov Solver 34 34 453264 0
Preconditioner 46 46 48144 0
Viewer 1 0 0 0
========================================================================================================================
Average time to get PetscTime(): 0
Average time for MPI_Barrier(): 1.10149e-05
Average time for zero size MPI_Send(): 5.72205e-06
#PETSc Option Table entries:
--mu=0.02
-log_summary
#End of PETSc Option Table entries
Compiled without FORTRAN kernels
Compiled with full precision matrices (default)
sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4
Configure options: PETSC_ARCH=linux-gnu-intel --prefix=/usr/local/petsc-3.5.1 --LDFLAGS="-lrt -L/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 -lmkl_rt -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -liomp5 -lm" --with-shared-libraries=1 --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpic++ --with-blas-lapack-dir=/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 --with-scalapack=1 --with-scalapack-include=/usr/local/intel-14.0.3.174/14.0.3.174/mkl/include --with-scalapack-lib="[-L/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 -lmkl_rt -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -liomp5 -lm]" --with-blacs=1 --with-blacs-include=/usr/local/intel-14.0.3.174/14.0.3.174/mkl/include --with-blacs-lib="[-L/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 -lmkl_rt -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -liomp5 -lm]" --with-hwloc=1 --with-hwloc-dir=/usr/local/hwloc-1.7.1 --with-ptscotch=1 --with-ptscotch-dir=/usr/local/petsc-3.5.1 --with-ml=1 --with-ml-include=/usr/local/petsc-3.5.1/include --with-ml-lib="[/usr/local/petsc-3.5.1/lib/libml.a,-lmpi_cxx,-lstdc++]" --with-hypre=1 --with-hypre-include=/usr/local/petsc-3.5.1/include --with-hypre-lib="[-L/usr/local/petsc-3.5.1/lib,-lHYPRE]" --with-mumps=1 --with-mumps-include=/usr/local/petsc-3.5.1/include --with-mumps-lib="[-L/usr/local/petsc-3.5.1/lib,-lcmumps,-ldmumps,-lsmumps,-lzmumps,-lmumps_common,-lparmetis,-lmetis,-lpord,-lptesmumps,-lptscotch,-lptscotcherr]" --with-metis=1 --with-metis-include=/usr/local/petsc-3.5.1/include --with-metis-lib="[-L/usr/local/petsc-3.5.1/lib,-lmetis]" --with-parmetis=1 --with-parmetis-include=/usr/local/petsc-3.5.1/include --with-parmetis-lib="[-L/usr/local/petsc-3.5.1/lib,-lparmetis,-lmetis]" --with-mkl_pardiso=1 --with-mkl_pardiso-include=/usr/local/intel-14.0.3.174/14.0.3.174/mkl/include --with-mkl_pardiso-lib="[-L/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 -lmkl_rt -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -liomp5 -lm]" --with-debugging=0
-----------------------------------------
Libraries compiled on Thu Aug 21 10:08:13 2014 on curie70
Machine characteristics: Linux-2.6.32-431.11.2.el6.Bull.48.x86_64-x86_64-with-redhat-6.4-Santiago
Using PETSc directory: /ccc/products2/petsc-3.5.1/build/petsc-3.5.1
Using PETSc arch: linux-gnu-intel
-----------------------------------------
Using C compiler: mpicc -fPIC -wd1572 -O3 ${COPTFLAGS} ${CFLAGS}
Using Fortran compiler: mpif90 -fPIC -O3 ${FOPTFLAGS} ${FFLAGS}
-----------------------------------------
Using include paths: -I/ccc/products2/petsc-3.5.1/build/petsc-3.5.1/linux-gnu-intel/include -I/ccc/products2/petsc-3.5.1/build/petsc-3.5.1/include -I/ccc/products2/petsc-3.5.1/build/petsc-3.5.1/include -I/ccc/products2/petsc-3.5.1/build/petsc-3.5.1/linux-gnu-intel/include -I/usr/local/petsc-3.5.1/include -I/usr/local/intel-14.0.3.174/14.0.3.174/mkl/include -I/usr/local/hwloc-1.7.1/include -I/opt/mpi/bullxmpi/1.2.7.2/include
-----------------------------------------
Using C linker: mpicc
Using Fortran linker: mpif90
Using libraries: -Wl,-rpath,/ccc/products2/petsc-3.5.1/build/petsc-3.5.1/linux-gnu-intel/lib -L/ccc/products2/petsc-3.5.1/build/petsc-3.5.1/linux-gnu-intel/lib -lpetsc -L/usr/local/petsc-3.5.1/lib -lHYPRE -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lparmetis -lmetis -lpord -lptesmumps -lptscotch -lptscotcherr -L/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 -lmkl_rt -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -liomp5 -lm -Wl,-rpath,/usr/local/petsc-3.5.1/lib -lml -lmpi_cxx -lstdc++ -Wl,-rpath,/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 -L/usr/local/intel-14.0.3.174/14.0.3.174/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_intel_thread -liomp5 -ldl -lpthread -lm -lparmetis -lmetis -lX11 -lssl -lcrypto -lpthread -Wl,-rpath,/usr/local/hwloc-1.7.1/lib -L/usr/local/hwloc-1.7.1/lib -lhwloc -lptesmumps -lptscotch -lptscotcherr -lscotch -lscotcherr -lm -Wl,-rpath,/opt/mpi/bullxmpi/1.2.7.2/lib -L/opt/mpi/bullxmpi/1.2.7.2/lib -Wl,-rpath,/usr/local/gcc-4.8.1/lib -L/usr/local/gcc-4.8.1/lib -Wl,-rpath,/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64 -Wl,-rpath,/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib/gcc -L/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib/gcc -Wl,-rpath,/usr/local/gcc-4.8.1/lib64 -L/usr/local/gcc-4.8.1/lib64 -Wl,-rpath,/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib64 -L/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib64 -Wl,-rpath,/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib -L/ccc/products2/gcc-4.8.1/BullEL_6__x86_64/lib -lmpi_f90 -lmpi_f77 -lm -lifport -lifcore -lm -lstdc++ -lmpi_cxx -lstdc++ -lrt -lmkl_rt -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -liomp5 -ldl -lmpi -lnuma -lnsl -lutil -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -lstdc++ -ldl
-----------------------------------------
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Execution Sum Up
########## ########## ########## ########## ########## ########## ########## ##########
Jobid : 2586609
Jobname : feelpp_steady_ns_3d
User : prudhomc
Account : gen7335@standard
Limits : time = 40:00 , memory/task = 4000 Mo
Date : submit = 04/02/2015 12:28:33 , start = 04/02/2015 12:28:33
Execution : partition = standard , QoS = normal , Comment = (null)
Resources : ntasks = 32 , cpus/task = 1 , ncpus = 32 , nodes = 2
Nodes=curie[5712-5713] CPU_IDs=0-15 Mem=64000
Memory / step
--------------
Resident Size (Mo) Virtual Size (Go)
JobID Max (Node:Task) AveTask Max (Node:Task) AveTask
----------- ------------------------ ------- -------------------------- -------
Accounting / step
------------------
JobID JobName Ntasks Ncpus Nnodes Layout Elapsed Ratio CPusage Eff State
------------ ------------ ------ ----- ------ ------- ------- ----- ------- --- -----
2586609 feelpp_steady_ns_3d - 32 2 - 00:05:49 100 - - -
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