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March 14, 2016 20:07
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\documentclass[]{article} | |
\usepackage{lmodern} | |
\usepackage{amssymb,amsmath} | |
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\begin{document} | |
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\textbf{Table 1. Status of microbial census by habitat classifications | |
and domain.} The isolation\_source field from the SILVA reference | |
database was manually curated to assign bacterial and archaeal sequences | |
coarse and fine scale habitat classifications. We calculated the number | |
of sequences and OTUs observed and the percent coverage on a sequence or | |
OTU basis for each classification and domain. Descriptions of each | |
category are provided in Table S1. | |
\begin{table}[!ht] | |
\centering | |
{\scriptsize | |
\begin{tabular}{llcccccccc} | |
\hline | |
\multirow{4}{*}{\textbf{Coarse}} & \multirow{4}{*}{\textbf{Fine}} & \multicolumn{4}{c}{\textbf{Bacteria}} & \multicolumn{4}{c}{\textbf{Archaea}} \\ \cmidrule(r){3-6} \cmidrule(r){7-10} & & \textbf{\bigcell{c}{Sequences \\ (N)}} & \textbf{\bigcell{c}{OTUs \\ (N)}} & \textbf{\bigcell{c}{\% Seq. \\ Coverage}} & \textbf{\bigcell{c}{\% OTU \\ Coverage}} & \textbf{\bigcell{c}{Sequences \\ (N)}} & \textbf{\bigcell{c}{OTUs \\ (N)}} & \textbf{\bigcell{c}{\% Seq. \\ Coverage}} & \textbf{\bigcell{c}{\% OTU \\ Coverage}} \\ | |
\hline Aerosol & & 3,472 & 1,068 & 79.5 & 33.2 & 2 & 1 & 100.0 & 100.0 \\ | |
Aquatic & Brackish & 1,094 & 646 & 54.6 & 23.1 & 1,368 & 314 & 87.4 & 44.9 \\ | |
& Brackish sediment & 390 & 243 & 54.4 & 26.7 & 525 & 208 & 76.8 & 41.3 \\ | |
& Freshwater & 21,647 & 6,689 & 80.8 & 37.7 & 1,540 & 439 & 84.7 & 46.5 \\ | |
& Freshwater sediment & 6,733 & 3,549 & 63.0 & 29.8 & 1,324 & 488 & 79.3 & 43.9 \\ | |
& Marine & 134,727 & 14,287 & 94.3 & 46.7 & 10,983 & 830 & 95.8 & 44.5 \\ | |
& Marine sediment & 27,801 & 9,567 & 79.6 & 40.8 & 14,049 & 1,507 & 95.0 & 53.7 \\ | |
& Hydrothermal vent & 10,860 & 4,216 & 75.4 & 36.5 & 3,797 & 734 & 90.4 & 50.3 \\ | |
& Ice & 2,073 & 936 & 71.2 & 36.1 & 42 & 5 & 95.2 & 60.0 \\ | |
& Other & 8,760 & 3,802 & 71.7 & 34.8 & 772 & 313 & 80.7 & 52.4 \\ | |
Built & Digesters & 33,152 & 8,949 & 82.9 & 36.8 & 4,764 & 483 & 93.6 & 36.4 \\ | |
& Food-associated & 11,813 & 1,632 & 92.0 & 41.9 & 117 & 40 & 80.3 & 42.5 \\ | |
& Industrial/mining & 16,582 & 6,099 & 76.6 & 36.3 & 1,245 & 336 & 84.4 & 42.3 \\ | |
& Pollution associated & 38,696 & 10,602 & 84.1 & 41.9 & 716 & 249 & 79.2 & 40.2 \\ | |
& Other & 8,556 & 2,730 & 79.1 & 34.7 & 444 & 111 & 90.8 & 63.1 \\ | |
Plant associated & Root & 19,695 & 5,052 & 84.3 & 38.7 & 200 & 61 & 85.5 & 52.5 \\ | |
& Surface & 4,892 & 1,385 & 82.7 & 38.8 & 0 & 0 & NA & NA \\ | |
& Other & 9,753 & 3,217 & 78.8 & 35.8 & 22 & 7 & 90.9 & 71.4 \\ | |
Soil & Agriculture & 10,051 & 4,017 & 73.6 & 34.0 & 146 & 56 & 80.8 & 50.0 \\ | |
& Desert & 3,042 & 1,280 & 73.7 & 37.5 & 245 & 79 & 77.6 & 30.4 \\ | |
& Permafrost & 1,922 & 870 & 73.0 & 40.3 & 39 & 20 & 64.1 & 30.0 \\ | |
& Other & 59,855 & 17,166 & 82.9 & 40.4 & 2,087 & 516 & 89.1 & 55.8 \\ | |
Host-associated & Vertebrate & 773,045 & 42,497 & 96.1 & 29.5 & 5,389 & 454 & 95.1 & 41.6 \\ | |
& Arthropod & 13,209 & 3,688 & 81.8 & 34.7 & 87 & 52 & 58.6 & 30.8 \\ | |
& Other invertebrate & 7,476 & 2,626 & 78.0 & 37.3 & 67 & 30 & 73.1 & 40.0 \\ | |
& Other & 10,855 & 1,754 & 89.2 & 33.4 & 54 & 17 & 87.0 & 58.8 \\ | |
Other & & 19,414 & 5,930 & 81.6 & 39.9 & 882 & 249 & 84.2 & 44.2 \\ | |
No source data & & 151,669 & 14,144 & 94.9 & 45.6 & 2,565 & 559 & 88.6 & 47.6 \\ | |
\hline | |
Total & & 1,411,234 & 108,950 & 94.5 & 29.2 & 53,546 & 4,252 & 95.1 & 38.5 \\ | |
\hline | |
\end{tabular} | |
} | |
\end{table} | |
\end{document} |
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