cluster.yaml

__default__:
    nCPUs     : 1
    memory    : 10000
    name      : "mykrobe.{rule}.{wildcards}"
    output    : "logs/cluster_{rule}.{wildcards}.o"
    error     : "logs/cluster_{rule}.{wildcards}.e"


map_minimap2:
    nCPUs     : 16
    memory    : 16000

samtools_sort:
    nCPUs     : 16
    memory    : 20000

porechop:
    nCPUs     : 16
    memory    : 16000

stats_pre_filtering:
    nCPUs     : 8
    memory    : 20000

plot_pre_filtering:
    memory    : 20000

stats_post_filtering:
    nCPUs     : 8
    memory    : 20000

plot_post_filtering:
    nCPUs     : 1
    memory    : 20000

mykrobe:
    memory    : 20000