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August 30, 2014 17:09
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julia error 3
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| brian@Brians-MacBook-Air:~$ brew rm arpack-julia suite-sparse-julia openblas-julia | |
| Uninstalling /usr/local/Cellar/arpack-julia/3.1.3... | |
| Uninstalling /usr/local/Cellar/suite-sparse-julia/4.2.1... | |
| Uninstalling /usr/local/Cellar/openblas-julia/0.2.10... | |
| brian@Brians-MacBook-Air:~$ brew cleanup | |
| brian@Brians-MacBook-Air:~$ brew install -v --HEAD julia && brew test -v --HEAD julia | |
| ==> Installing dependencies for julia: staticfloat/julia/openblas-julia, staticfloat/julia/arpack-julia, staticfloat/julia/suite-sparse-julia | |
| ==> Installing julia dependency: staticfloat/julia/openblas-julia | |
| ==> Downloading https://juliabottles.s3.amazonaws.com/openblas-julia-0.2.10.mavericks.bottle.2.tar.gz | |
| Already downloaded: /Library/Caches/Homebrew/openblas-julia-0.2.10.mavericks.bottle.2.tar.gz | |
| ==> Verifying openblas-julia-0.2.10.mavericks.bottle.2.tar.gz checksum | |
| ==> Pouring openblas-julia-0.2.10.mavericks.bottle.2.tar.gz | |
| tar xf /Library/Caches/Homebrew/openblas-julia-0.2.10.mavericks.bottle.2.tar.gz | |
| ==> Caveats | |
| This formula is keg-only, which means it was not symlinked into /usr/local. | |
| Conflicts with openblas in homebrew-science. | |
| Generally there are no consequences of this for you. If you build your | |
| own software and it requires this formula, you'll need to add to your | |
| build variables: | |
| LDFLAGS: -L/usr/local/opt/openblas-julia/lib | |
| CPPFLAGS: -I/usr/local/opt/openblas-julia/include | |
| ==> Finishing up | |
| ==> Summary | |
| 🍺 /usr/local/Cellar/openblas-julia/0.2.10: 9 files, 30M | |
| ==> Installing julia dependency: staticfloat/julia/arpack-julia | |
| ==> Downloading https://juliabottles.s3.amazonaws.com/arpack-julia-3.1.3.mavericks.bottle.4.tar.gz | |
| Already downloaded: /Library/Caches/Homebrew/arpack-julia-3.1.3.mavericks.bottle.4.tar.gz | |
| ==> Verifying arpack-julia-3.1.3.mavericks.bottle.4.tar.gz checksum | |
| ==> Pouring arpack-julia-3.1.3.mavericks.bottle.4.tar.gz | |
| tar xf /Library/Caches/Homebrew/arpack-julia-3.1.3.mavericks.bottle.4.tar.gz | |
| ==> Caveats | |
| This formula is keg-only, which means it was not symlinked into /usr/local. | |
| Conflicts with arpack in homebrew-science. | |
| Generally there are no consequences of this for you. If you build your | |
| own software and it requires this formula, you'll need to add to your | |
| build variables: | |
| LDFLAGS: -L/usr/local/opt/arpack-julia/lib | |
| ==> Finishing up | |
| ==> Summary | |
| 🍺 /usr/local/Cellar/arpack-julia/3.1.3: 9 files, 1.5M | |
| ==> Installing julia dependency: staticfloat/julia/suite-sparse-julia | |
| ==> Downloading https://juliabottles.s3.amazonaws.com/suite-sparse-julia-4.2.1.mavericks.bottle.3.tar.gz | |
| Already downloaded: /Library/Caches/Homebrew/suite-sparse-julia-4.2.1.mavericks.bottle.3.tar.gz | |
| ==> Verifying suite-sparse-julia-4.2.1.mavericks.bottle.3.tar.gz checksum | |
| ==> Pouring suite-sparse-julia-4.2.1.mavericks.bottle.3.tar.gz | |
| tar xf /Library/Caches/Homebrew/suite-sparse-julia-4.2.1.mavericks.bottle.3.tar.gz | |
| ==> Caveats | |
| This formula is keg-only, which means it was not symlinked into /usr/local. | |
| Conflicts with suite-sparse in homebrew-science. | |
| Generally there are no consequences of this for you. If you build your | |
| own software and it requires this formula, you'll need to add to your | |
| build variables: | |
| LDFLAGS: -L/usr/local/opt/suite-sparse-julia/lib | |
| CPPFLAGS: -I/usr/local/opt/suite-sparse-julia/include | |
| ==> Finishing up | |
| ==> Summary | |
| 🍺 /usr/local/Cellar/suite-sparse-julia/4.2.1: 76 files, 3.7M | |
| ==> Installing julia | |
| ==> Using Homebrew-provided fortran compiler. | |
| This may be changed by setting the FC environment variable. | |
| ==> Building with an alternative Fortran compiler | |
| This is unsupported. | |
| ==> Building with an alternative Fortran compiler | |
| This is unsupported. | |
| ==> Cloning https://github.com/JuliaLang/julia.git | |
| git --git-dir /Library/Caches/Homebrew/julia--git/.git status -s | |
| Updating /Library/Caches/Homebrew/julia--git | |
| git config remote.origin.url https://github.com/JuliaLang/julia.git | |
| git config remote.origin.fetch +refs/heads/master:refs/remotes/origin/master | |
| git fetch origin | |
| git checkout -f master | |
| Already on 'master' | |
| Your branch is up-to-date with 'origin/master'. | |
| git reset --hard origin/HEAD | |
| HEAD is now at 7716fa7 Update variables.rst | |
| git submodule update --init --recursive | |
| git reset --hard origin/HEAD | |
| HEAD is now at 7716fa7 Update variables.rst | |
| git clone . /private/tmp/julia-U9z5Ix | |
| Cloning into '/private/tmp/julia-U9z5Ix'... | |
| done. | |
| git clone deps/Rmath /private/tmp/julia-U9z5Ix/deps/Rmath | |
| Cloning into '/private/tmp/julia-U9z5Ix/deps/Rmath'... | |
| done. | |
| Note: checking out '226598f63af75e8bc3568f01e34932caebce6064'. | |
| You are in 'detached HEAD' state. You can look around, make experimental | |
| changes and commit them, and you can discard any commits you make in this | |
| state without impacting any branches by performing another checkout. | |
| If you want to create a new branch to retain commits you create, you may | |
| do so (now or later) by using -b with the checkout command again. Example: | |
| git checkout -b new_branch_name | |
| git clone deps/libuv /private/tmp/julia-U9z5Ix/deps/libuv | |
| Cloning into '/private/tmp/julia-U9z5Ix/deps/libuv'... | |
| done. | |
| Note: checking out 'a12eb3329cd2c0224ef631ea062fa16d119da47c'. | |
| You are in 'detached HEAD' state. You can look around, make experimental | |
| changes and commit them, and you can discard any commits you make in this | |
| state without impacting any branches by performing another checkout. | |
| If you want to create a new branch to retain commits you create, you may | |
| do so (now or later) by using -b with the checkout command again. Example: | |
| git checkout -b new_branch_name | |
| git clone deps/openlibm /private/tmp/julia-U9z5Ix/deps/openlibm | |
| Cloning into '/private/tmp/julia-U9z5Ix/deps/openlibm'... | |
| done. | |
| Note: checking out '0b9d67e54a5b07e32a27b68cf0a01c33b515fc9b'. | |
| You are in 'detached HEAD' state. You can look around, make experimental | |
| changes and commit them, and you can discard any commits you make in this | |
| state without impacting any branches by performing another checkout. | |
| If you want to create a new branch to retain commits you create, you may | |
| do so (now or later) by using -b with the checkout command again. Example: | |
| git checkout -b new_branch_name | |
| git clone doc/juliadoc /private/tmp/julia-U9z5Ix/doc/juliadoc | |
| Cloning into '/private/tmp/julia-U9z5Ix/doc/juliadoc'... | |
| done. | |
| Note: checking out 'bab3c6ba9e613da94001e1d71f994143814a1422'. | |
| You are in 'detached HEAD' state. You can look around, make experimental | |
| changes and commit them, and you can discard any commits you make in this | |
| state without impacting any branches by performing another checkout. | |
| If you want to create a new branch to retain commits you create, you may | |
| do so (now or later) by using -b with the checkout command again. Example: | |
| git checkout -b new_branch_name | |
| ==> Downloading https://gist.github.com/staticfloat/3806093/raw/cb34c7262b9130f0e9e07641a66fccaa0d08b5d2/deps.Makefile.diff | |
| /usr/bin/curl -fLA Homebrew 0.9.5 (Ruby 2.0.0-451; Mac OS X 10.9.4) https://gist.github.com/staticfloat/3806093/raw/cb34c7262b9130f0e9e07641a66fccaa0d08b5d2/deps.Makefile.diff -C 0 -o /Library/Caches/Homebrew/julia--patch-https%3A%2F%2Fgist.github.com%2Fstaticfloat%2F3806093%2Fraw%2Fcb34c7262b9130f0e9e07641a66fccaa0d08b5d2%2Fdeps.Makefile.diff.diff.incomplete | |
| % Total % Received % Xferd Average Speed Time Time Time Current | |
| Dload Upload Total Spent Left Speed | |
| 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 | |
| 0 0 0 573 0 0 400 0 --:--:-- 0:00:01 --:--:-- 958 | |
| ==> Patching | |
| /usr/bin/patch -g 0 -f -d /private/tmp/julia-U9z5Ix -p1 -i /private/tmp/julia--patch-NvAovd/deps.Makefile.diff | |
| patching file deps/Makefile | |
| Hunk #1 succeeded at 1357 (offset 703 lines). | |
| ==> Downloading https://double-conversion.googlecode.com/files/double-conversion-1.1.1.tar.gz | |
| Already downloaded: /Library/Caches/Homebrew/julia--doubleconversion-1.1.1.tar.gz | |
| ==> Verifying julia--doubleconversion-1.1.1.tar.gz checksum | |
| ==> Using double-conversion: /Library/Caches/Homebrew/julia--doubleconversion-1.1.1.tar.gz | |
| ==> Downloading http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-2.2.tar.gz | |
| Already downloaded: /Library/Caches/Homebrew/julia--dsfmt-2.2.tar.gz | |
| ==> Verifying julia--dsfmt-2.2.tar.gz checksum | |
| ==> Using DSFMT: /Library/Caches/Homebrew/julia--dsfmt-2.2.tar.gz | |
| ==> make -C contrib -f repackage_system_suitesparse4.make prefix=/usr/local/Cellar/julia/HEAD USE_BLAS64=0 FC=/usr/local/bin/gfortran LLVM_CONFIG=llvm-config-3.3 USECLANG=1 VERBOSE=1 LIBBLAS=-lopenblas LIBBLASNAME=libopenblas LIBLAPACK=-lopenblas LIBLAPACKNAME=libopenblas USE_SYSTEM_ZLIB=1 USE_SYSTEM_FFTW=1 USE_SYSTEM_GLPK=1 USE_SYSTEM_GMP=1 USE_SYSTEM_LLVM=1 USE_SYSTEM_PCRE=1 USE_SYSTEM_BLAS=1 USE_SYSTEM_LAPACK=1 USE_SYSTEM_SUITESPARSE=1 USE_SYSTEM_ARPACK=1 USE_SYSTEM_MPFR=1 | |
| mkdir -p /private/tmp/julia-U9z5Ix/usr/lib | |
| mkdir -p /private/tmp/julia-U9z5Ix/deps/SuiteSparse-SYSTEM/lib | |
| cd /private/tmp/julia-U9z5Ix/deps/SuiteSparse-SYSTEM/lib && \ | |
| rm -f /private/tmp/julia-U9z5Ix/usr/lib/lib{amd,cholmod,colamd,spqr,umfpack}.dylib && \ | |
| clang -stdlib=libc++ -mmacosx-version-min=10.7 -shared -Xlinker -all_load /usr/local/opt/suite-sparse-julia/lib/libamd.a -o /private/tmp/julia-U9z5Ix/usr/lib/libamd.dylib && \ | |
| install_name_tool -id @rpath/libamd.dylib /private/tmp/julia-U9z5Ix/usr/lib/libamd.dylib && \ | |
| clang -stdlib=libc++ -mmacosx-version-min=10.7 -shared -Xlinker -all_load /usr/local/opt/suite-sparse-julia/lib/libcolamd.a -o /private/tmp/julia-U9z5Ix/usr/lib/libcolamd.dylib && \ | |
| install_name_tool -id @rpath/libcolamd.dylib /private/tmp/julia-U9z5Ix/usr/lib/libcolamd.dylib && \ | |
| clang++ -stdlib=libc++ -mmacosx-version-min=10.7 -shared -Xlinker -all_load /usr/local/opt/suite-sparse-julia/lib/libsuitesparseconfig.a /usr/local/opt/suite-sparse-julia/lib/libcholmod.a -o /private/tmp/julia-U9z5Ix/usr/lib/libcholmod.dylib -L/private/tmp/julia-U9z5Ix/usr/lib -L/usr/local/opt/suite-sparse-julia/lib -L/usr/local/opt/arpack-julia/lib -L/usr/local/opt/openblas-julia/lib -L/usr/local/opt/llvm33-julia/lib -L/usr/local/opt/libffi/lib -L/usr/local/opt/cloog018-julia/lib -L/usr/local/opt/isl011-julia/lib -L/usr/local/opt/gmp4-julia/lib -L/usr/local/lib -F/usr/local/Frameworks -Wl,-headerpad_max_install_names -headerpad_max_install_names -lcolamd -lccolamd -lcamd -lamd -lopenblas -Wl,-rpath,'@loader_path/' && \ | |
| install_name_tool -id @rpath/libcholmod.dylib /private/tmp/julia-U9z5Ix/usr/lib/libcholmod.dylib && \ | |
| clang++ -stdlib=libc++ -mmacosx-version-min=10.7 -shared -Xlinker -all_load /usr/local/opt/suite-sparse-julia/lib/libsuitesparseconfig.a /usr/local/opt/suite-sparse-julia/lib/libumfpack.a -o /private/tmp/julia-U9z5Ix/usr/lib/libumfpack.dylib -L/private/tmp/julia-U9z5Ix/usr/lib -L/usr/local/opt/suite-sparse-julia/lib -L/usr/local/opt/arpack-julia/lib -L/usr/local/opt/openblas-julia/lib -L/usr/local/opt/llvm33-julia/lib -L/usr/local/opt/libffi/lib -L/usr/local/opt/cloog018-julia/lib -L/usr/local/opt/isl011-julia/lib -L/usr/local/opt/gmp4-julia/lib -L/usr/local/lib -F/usr/local/Frameworks -Wl,-headerpad_max_install_names -headerpad_max_install_names -lcholmod -lcolamd -lamd -lopenblas -Wl,-rpath,'@loader_path/' && \ | |
| install_name_tool -id @rpath/libumfpack.dylib /private/tmp/julia-U9z5Ix/usr/lib/libumfpack.dylib && \ | |
| clang++ -stdlib=libc++ -mmacosx-version-min=10.7 -shared -Xlinker -all_load /usr/local/opt/suite-sparse-julia/lib/libsuitesparseconfig.a /usr/local/opt/suite-sparse-julia/lib/libspqr.a -o /private/tmp/julia-U9z5Ix/usr/lib/libspqr.dylib -L/private/tmp/julia-U9z5Ix/usr/lib -L/usr/local/opt/suite-sparse-julia/lib -L/usr/local/opt/arpack-julia/lib -L/usr/local/opt/openblas-julia/lib -L/usr/local/opt/llvm33-julia/lib -L/usr/local/opt/libffi/lib -L/usr/local/opt/cloog018-julia/lib -L/usr/local/opt/isl011-julia/lib -L/usr/local/opt/gmp4-julia/lib -L/usr/local/lib -F/usr/local/Frameworks -Wl,-headerpad_max_install_names -headerpad_max_install_names -lcholmod -lcolamd -lamd -lopenblas -Wl,-rpath,'@loader_path/' && \ | |
| install_name_tool -id @rpath/libspqr.dylib /private/tmp/julia-U9z5Ix/usr/lib/libspqr.dylib | |
| ld: file not found: /usr/local/lib/gcc/x86_64-apple-darwin13.3.0/4.9.1/libgfortran.3.dylib for architecture x86_64 | |
| clang: error: linker command failed with exit code 1 (use -v to see invocation) | |
| make: *** [default] Error 1 | |
| ==> Formula | |
| Tap: staticfloat/homebrew-julia | |
| Path: /usr/local/Library/Taps/staticfloat/homebrew-julia/julia.rb | |
| ==> Configuration | |
| HOMEBREW_VERSION: 0.9.5 | |
| HEAD: 9c4f0973b5b595b25d1593f33011154907af49b7 | |
| CPU: quad-core 64-bit haswell | |
| OS X: 10.9.4-x86_64 | |
| Xcode: 5.1.1 | |
| CLT: 5.1.0.0.1.1396320587 | |
| X11: 2.7.6 => /opt/X11 | |
| ==> ENV | |
| CC: /usr/bin/clang | |
| CXX: /usr/bin/clang++ | |
| OBJC: /usr/bin/clang | |
| OBJCXX: /usr/bin/clang++ | |
| CFLAGS: -Os -w -pipe -march=native -mmacosx-version-min=10.9 | |
| CXXFLAGS: -Os -w -pipe -march=native -mmacosx-version-min=10.9 | |
| CPPFLAGS: -I/usr/local/opt/suite-sparse-julia/include -I/usr/local/opt/openblas-julia/include -I/usr/local/opt/cloog018-julia/include -I/usr/local/opt/isl011-julia/include -I/usr/local/opt/gmp4-julia/include -F/usr/local/Frameworks | |
| LDFLAGS: -L/usr/local/opt/suite-sparse-julia/lib -L/usr/local/opt/arpack-julia/lib -L/usr/local/opt/openblas-julia/lib -L/usr/local/opt/llvm33-julia/lib -L/usr/local/opt/libffi/lib -L/usr/local/opt/cloog018-julia/lib -L/usr/local/opt/isl011-julia/lib -L/usr/local/opt/gmp4-julia/lib -L/usr/local/lib -F/usr/local/Frameworks -Wl,-headerpad_max_install_names -headerpad_max_install_names | |
| MAKEFLAGS: -j4 | |
| CMAKE_PREFIX_PATH: /usr/local/opt/suite-sparse-julia:/usr/local/opt/arpack-julia:/usr/local/opt/openblas-julia:/usr/local/opt/llvm33-julia:/usr/local/opt/libffi:/usr/local/opt/cloog018-julia:/usr/local/opt/isl011-julia:/usr/local/opt/gmp4-julia | |
| CMAKE_FRAMEWORK_PATH: /usr/local/Frameworks | |
| MACOSX_DEPLOYMENT_TARGET: 10.9 | |
| PKG_CONFIG_PATH: /usr/local/opt/arpack-julia/lib/pkgconfig:/usr/local/opt/libffi/lib/pkgconfig:/usr/local/opt/cloog018-julia/lib/pkgconfig:/usr/local/opt/isl011-julia/lib/pkgconfig | |
| PKG_CONFIG_LIBDIR: /usr/local/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/10.9:/usr/lib/pkgconfig | |
| PATH: /usr/local/opt/arpack-julia/bin:/usr/local/opt/llvm33-julia/bin:/usr/local/opt/cloog018-julia/bin:/usr/local/opt/python/bin:/usr/local/bin:/usr/local/sbin:/Users/brian/.rvm/gems/ruby-2.1.2/bin:/Users/brian/.rvm/gems/ruby-2.1.2@global/bin:/Users/brian/.rvm/rubies/ruby-2.1.2/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/opt/X11/bin:/opt/local/bin:/opt/local/sbin:/Applications/Racket/bin:/Users/brian/.rvm/bin:/usr/local/Library/Contributions/cmd | |
| CPATH: /usr/local/include | |
| Error: julia HEAD did not build | |
| Logs: | |
| /Users/brian/Library/Logs/Homebrew/julia/01.make |
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