rachelss

#!/bin/bash

cd ~/Pictures/NatGeo

rm NG_img_of_day
rm NG_img_of_day_site

curl http://photography.nationalgeographic.com/photography/photo-of-the-day/ \
    -o NG_img_of_day

rachelss

#!/usr/bin/env python2
from Bio import AlignIO   
import sys

fformat=sys.argv[1].split('.')[-1]
align = AlignIO.read(open(sys.argv[1]), fformat)        #load file
outname = sys.argv[1].split('.')[:-1]+'.filtered.phylip-relaxed'

#find variable sites 
info=[]

rachelss

#! /usr/local/bin/python
#modified from Bienvenido Velez
import sys
import os.path
from Bio import SeqIO
from Bio.Blast import NCBIXML
from Bio.Blast import NCBIWWW

def runBlastn(fastaSequence,outputFileName):
    'Conducts a nucleotide Blast run on the given fastaSequence and save the blast run output in XML format'