Skip to content

Instantly share code, notes, and snippets.

@rafamayo
Forked from rajvansia/upload-fhir-bundle.py
Last active February 14, 2024 02:45
Show Gist options
  • Save rafamayo/1731e489b114a8cb1ac4c3f8fbc6e9fc to your computer and use it in GitHub Desktop.
Save rafamayo/1731e489b114a8cb1ac4c3f8fbc6e9fc to your computer and use it in GitHub Desktop.
import json
import os
import requests
# FHIR server endpoint
URL = "http://localhost:8080/fhir/"
# FHIR server json header content
headers = {"Content-Type": "application/fhir+json;charset=utf-8"}
# This path is specific to my setup
dirTestPatients = '../../Synthea/output/fhir/'
# Loop over all files in the output folder in order to upload each json file for each patient.
for dirpath, dirnames, files in os.walk(dirTestPatients):
for file_name in files:
# Make sure the encoding is utf-8
with open(dirTestPatients+file_name, "r", encoding='utf-8') as bundle_file:
data = bundle_file.read()
r = requests.post(url = URL, data = data, headers = headers)
# Output file name that was processed + the status code
print(file_name)
print(r.status_code)
@sbec100
Copy link

sbec100 commented Feb 14, 2024

was this ever fixed, getting same error where it just creates “Location” and “Organization”

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment