Created
June 16, 2020 17:44
-
-
Save rahulbhadani/e17331a6023155322d19f1da51ab2489 to your computer and use it in GitHub Desktop.
Reading .h5 data to get count matrix
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import scanpy | |
| ad = sc.read(filename="Zeisel.h5") | |
| X = ad.X # X is the count matrix |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment