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CouchDB-like view of EOL Trait data
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<html> | |
<head> | |
<title>CouchDB-like view of EOL Trait data</title> | |
<meta charset="UTF-8"/> | |
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.2/jquery.min.js"></script> | |
</head> | |
<body> | |
<h1>CouchDB-like view of EOL Trait data</h1> | |
<p>API call like this: http://eol.org/api/traits/26374</p> | |
<div id="output"></div> | |
<script> | |
// Traits | |
var doc = { | |
"@graph": [ | |
{ | |
"@id": "http://eol.org/pages/26374", | |
"@type": "dwc:Taxon", | |
"dwc:scientificName": "Bryaninops Smith 1959", | |
"dwc:taxonRank": "genus", | |
"dwc:parentNameUsageID": "http://eol.org/pages/5319" | |
}, | |
{ | |
"@type": "dwc:ResourceRelationship", | |
"dwc:resourceID": "http://eol.org/pages/26374", | |
"dwc:relationshipOfResource": "foaf:isPrimaryTopicOf", | |
"dwc:relatedResourceID": "http://en.wikipedia.org/w/index.php?title=Bryaninops", | |
"dwc:relationshipAccordingTo": "http://eol.org" | |
}, | |
{ | |
"@type": "gbif:VernacularName", | |
"dwc:vernacularName": { | |
"en": "Sea Whip Gobies" | |
}, | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"gbif:isPreferredName": true | |
}, | |
{ | |
"@id": "http://eol.org/resources/741/measurements/cc398ead7f179cfb7801e72037f6300c", | |
"data_point_uri_id": 7291124, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "habitat" | |
}, | |
"@id": "http://rs.tdwg.org/dwc/terms/habitat" | |
}, | |
"dwc:measurementValue": { | |
"rdfs:label": { | |
"en": "marine habitat" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/ENVO_00000569" | |
}, | |
"source": "<a href=\"http://www.marine.csiro.au/mirrorsearch/ir_search.list_species?gen_id=1033961\">http://www.marine.csiro.au/mirrorsearch/ir_search.list_species?gen_id=1033961</a>", | |
"scientific name": "Bryaninops" | |
}, | |
{ | |
"@id": "http://eol.org/resources/708/measurements/884fefc2405779dfcd7b3c70099f5bb3", | |
"data_point_uri_id": 20748776, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "habitat" | |
}, | |
"@id": "http://rs.tdwg.org/dwc/terms/habitat" | |
}, | |
"dwc:measurementValue": { | |
"rdfs:label": { | |
"en": "sea" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/ENVO_00000016" | |
}, | |
"source": "<a href=\"http://eol.org/pages/26374/details#wikipedia\">http://eol.org/pages/26374/details#wikipedia</a>", | |
"measurement method": "text mining", | |
"contributor": "<a href=\"http://environments-eol.blogspot.com/2013/03/welcome-to-environments-eol-few-words.html\">Environments-EOL</a>", | |
"measurement remarks": "source text: \"sea\"", | |
"scientific name": "Bryaninops" | |
}, | |
{ | |
"@id": "http://eol.org/resources/708/measurements/dc0f41841ab2efcd6ed3ed2ed790a57f", | |
"data_point_uri_id": 12521249, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "habitat" | |
}, | |
"@id": "http://rs.tdwg.org/dwc/terms/habitat" | |
}, | |
"dwc:measurementValue": { | |
"rdfs:label": { | |
"en": "tropical" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/ENVO_01000204" | |
}, | |
"source": "<a href=\"http://eol.org/pages/26374/details#wikipedia\">http://eol.org/pages/26374/details#wikipedia</a>", | |
"measurement method": "text mining", | |
"contributor": "<a href=\"http://environments-eol.blogspot.com/2013/03/welcome-to-environments-eol-few-words.html\">Environments-EOL</a>", | |
"measurement remarks": "source text: \"tropical\"", | |
"scientific name": "Bryaninops" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/b7c9316b6d4e2752ccdd7954ece25f53", | |
"data_point_uri_id": 6527654, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water depth" | |
}, | |
"@id": "http://rs.tdwg.org/dwc/terms/verbatimDepth" | |
}, | |
"dwc:measurementValue": "1", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "m" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000008" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001113" | |
}, | |
"statistical method": "min", | |
"individual count": "65", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/bfee4ab9cb54518ffd30aa07773901f0", | |
"data_point_uri_id": 6527653, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water depth" | |
}, | |
"@id": "http://rs.tdwg.org/dwc/terms/verbatimDepth" | |
}, | |
"dwc:measurementValue": "87.6", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "m" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000008" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "max" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001114" | |
}, | |
"statistical method": "max", | |
"individual count": "65", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/76ed7dea61cc12f876767f09f75e76b0", | |
"data_point_uri_id": 6527652, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water nitrate concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedNitrate" | |
}, | |
"dwc:measurementValue": "0.05", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "µmol/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000064" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001113" | |
}, | |
"statistical method": "min", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/c43899fbcb9b7ab0bd0d080e7472f284", | |
"data_point_uri_id": 6527651, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water nitrate concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedNitrate" | |
}, | |
"dwc:measurementValue": "8.732", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "µmol/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000064" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "max" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001114" | |
}, | |
"statistical method": "max", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/1b29041ebdcbdbae78ce435f9c7c6663", | |
"data_point_uri_id": 6527640, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water temperature" | |
}, | |
"@id": "http://eol.org/schema/terms/SeawaterTemperature" | |
}, | |
"dwc:measurementValue": "23.296", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "degrees Celsius" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000027" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001113" | |
}, | |
"statistical method": "min", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/393e537e01eb68197490c938af45b65b", | |
"data_point_uri_id": 6527639, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water temperature" | |
}, | |
"@id": "http://eol.org/schema/terms/SeawaterTemperature" | |
}, | |
"dwc:measurementValue": "29.336", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "degrees Celsius" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000027" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "max" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001114" | |
}, | |
"statistical method": "max", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/83e6f1f08438a4638d223b7d2343e327", | |
"data_point_uri_id": 6527642, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water silicate concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedSilicate" | |
}, | |
"dwc:measurementValue": "0.667", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "µmol/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000064" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001113" | |
}, | |
"statistical method": "min", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/82aa6c7635ddd0781b9d257d978740db", | |
"data_point_uri_id": 6527641, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water silicate concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedSilicate" | |
}, | |
"dwc:measurementValue": "9.298", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "µmol/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000064" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "max" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001114" | |
}, | |
"statistical method": "max", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/c284e3686b7c2ed2e80bc3c2bba425fd", | |
"data_point_uri_id": 6527646, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water phosphate concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedPhosphate" | |
}, | |
"dwc:measurementValue": "0.054", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "µmol/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000064" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001113" | |
}, | |
"statistical method": "min", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/f2e089058ebb752628e6091f68225d09", | |
"data_point_uri_id": 6527645, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water phosphate concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedPhosphate" | |
}, | |
"dwc:measurementValue": "0.867", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "µmol/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000064" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "max" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001114" | |
}, | |
"statistical method": "max", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/9c710d4ed72f9b846662506ab0818b58", | |
"data_point_uri_id": 6527648, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water dissolved O2 concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedOxygen" | |
}, | |
"dwc:measurementValue": "3.338", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "mL/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000207" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001113" | |
}, | |
"statistical method": "min", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/e95e99e1e469468725c0a6eb0e1a1440", | |
"data_point_uri_id": 6527647, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water dissolved O2 concentration" | |
}, | |
"@id": "http://eol.org/schema/terms/DissolvedOxygen" | |
}, | |
"dwc:measurementValue": "4.685", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "mL/L" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000207" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "max" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001114" | |
}, | |
"statistical method": "max", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/4f84043c863117424b019e537184811f", | |
"data_point_uri_id": 6527649, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water O2 saturation" | |
}, | |
"@id": "http://eol.org/schema/terms/OxygenSaturation" | |
}, | |
"dwc:measurementValue": "103.992", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "percent" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000187" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "max" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001114" | |
}, | |
"statistical method": "max", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/e32efac3a7aab943f4b937697c655c96", | |
"data_point_uri_id": 6527650, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water O2 saturation" | |
}, | |
"@id": "http://eol.org/schema/terms/OxygenSaturation" | |
}, | |
"dwc:measurementValue": "72.456", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "percent" | |
}, | |
"@id": "http://purl.obolibrary.org/obo/UO_0000187" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
"@id": "http://semanticscience.org/resource/SIO_001113" | |
}, | |
"statistical method": "min", | |
"individual count": "40", | |
"event date": "1908-02-15 13:36:00+00 to 2005-01-13 11:00:00+00", | |
"occurrence remarks": "11 taxa", | |
"scientific name": "Bryaninops Smith, 1959" | |
}, | |
{ | |
"@id": "http://eol.org/resources/692/measurements/71765fed6c57f417c5059d3757f99d4c", | |
"data_point_uri_id": 6527644, | |
"@type": "dwc:MeasurementOrFact", | |
"dwc:taxonID": "http://eol.org/pages/26374", | |
"dwc:measurementType": { | |
"rdfs:label": { | |
"en": "water salinity" | |
}, | |
"@id": "http://eol.org/schema/terms/Salinity" | |
}, | |
"dwc:measurementValue": "32.2", | |
"dwc:measurementUnit": { | |
"rdfs:label": { | |
"en": "PSU" | |
}, | |
"@id": "http://eol.org/schema/terms/practicalSalinityUnits" | |
}, | |
"eolterms:statisticalMethod": { | |
"rdfs:label": { | |
"en": "min" | |
}, | |
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for (var i in doc['@graph']) { | |
var traits = []; | |
if (doc['@graph'][i]['@id']) { | |
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var units = null; | |
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if (doc['@graph'][i]["dwc:measurementValue"]) { | |
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value = doc['@graph'][i]["dwc:measurementValue"]; | |
break; | |
case 'object': | |
value = doc['@graph'][i]["dwc:measurementValue"]["rdfs:label"]["en"]; | |
break; | |
default: | |
value = 'x'; | |
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// Units | |
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units = doc['@graph'][i]["dwc:measurementUnit"]["rdfs:label"]["en"]; | |
} | |
if (doc['@graph'][i]["statistical method"]) { | |
statisticalMethod = doc['@graph'][i]["statistical method"]; | |
} | |
html += key + '=' + value + ' ' + units + ' ' + statisticalMethod + '<br/>'; | |
break; | |
case "eol:Association": | |
var associationType = null; | |
if (doc['@graph'][i]["eol:associationType"]) { | |
associationType = doc['@graph'][i]["eol:associationType"]["rdfs:label"]["en"]; | |
} | |
var target = doc['@graph'][i]["eol:targetTaxonID"]; | |
html += associationType + '=' + target + '<br/>'; | |
break; | |
default: | |
break; | |
} | |
// dump | |
} | |
} | |
$('#output').html(html); | |
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