Created
May 10, 2016 13:27
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Cricula NEXUS
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#NEXUS | |
Begin trees; [Treefile saved Thu Aug 20 21:42:14 2015] | |
[! | |
>Data file = /Users/rpage/Sites/geojson-phylogeny-demo/bold-api/service/tmp/SAUPA642-10/SAUPA642-10.nex | |
>Neighbor-joining search settings: | |
> Ties (if encountered) will be broken systematically | |
> Distance measure = uncorrected ("p") | |
> (Tree is unrooted) | |
] | |
Translate | |
1 SAUPA645_10, | |
2 SAUPA642_10, | |
3 SAUPA641_10, | |
4 SAUPA348_10, | |
5 SAUPA330_10, | |
6 SAUPA325_10, | |
7 SAUPA324_10, | |
8 SAUPA129_09, | |
9 SARBB639_09, | |
10 SASNB003_09, | |
11 SASNB002_09, | |
12 SARBB733_09, | |
13 SAUPA069_09, | |
14 SAUPA052_09, | |
15 SASNB210_09, | |
16 SASNC2419_12, | |
17 SARBB601_09, | |
18 SARBB600_09, | |
19 SASNA999_09, | |
20 SAUPA073_09, | |
21 SAUPA072_09, | |
22 SARBB743_09, | |
23 SARBB742_09, | |
24 SARBB741_09, | |
25 SARBB740_09, | |
26 SARBB638_09, | |
27 SARBB636_09, | |
28 SAVSE192_12, | |
29 SAVSE191_12, | |
30 SASNB028_09, | |
31 SASNB027_09, | |
32 SAUPA051_09, | |
33 SAUPA053_09, | |
34 SAUPA639_10, | |
35 SAUPA366_10, | |
36 SAUPA365_10, | |
37 SAUPA364_10, | |
38 SAUPA347_10, | |
39 SAUPA346_10, | |
40 SAUPA068_09, | |
41 SASNB022_09, | |
42 SARBB643_09, | |
43 SAVSA376_10, | |
44 SAVSA377_10, | |
45 SASNB024_09, | |
46 SASNB023_09, | |
47 SAUPA322_10, | |
48 SAUPA321_10, | |
49 SAUPA320_10, | |
50 SARBB645_09, | |
51 SARBB646_09, | |
52 SAUPA319_10, | |
53 SASNB209_09, | |
54 SAUPA318_10, | |
55 SAUPA067_09, | |
56 SAUPA066_09, | |
57 SARBB640_09, | |
58 SAUPA637_10, | |
59 SARBB647_09, | |
60 GRACI494_09, | |
61 GRACI495_09, | |
62 SAUPA338_10, | |
63 SAUPA337_10, | |
64 SAUPA336_10, | |
65 SAUPA335_10, | |
66 SARBB620_09, | |
67 SARBB701_09, | |
68 SASNC1164_11, | |
69 SASNC1163_11, | |
70 SAVSE373_12, | |
71 SASNB894_10, | |
72 SASNB891_10, | |
73 SASNB889_10, | |
74 SASNB018_09, | |
75 SASNB189_09, | |
76 SARBB702_09, | |
77 LTOL529_07, | |
78 SASNB051_09, | |
79 SARBB604_09, | |
80 SARBB617_09, | |
81 SARBB615_09, | |
82 SARBB610_09, | |
83 SASNC1582_12, | |
84 SAUPA648_10, | |
85 SAUPA647_10, | |
86 SAUPA646_10, | |
87 SAUPA644_10, | |
88 SAUPA643_10, | |
89 SAUPA329_10, | |
90 SAUPA328_10, | |
91 SAUPA327_10, | |
92 SARBB745_09, | |
93 SARBB744_09, | |
94 SARBB739_09, | |
95 SARBB737_09, | |
96 SARBB635_09, | |
97 SAUPA358_10, | |
98 SARBB700_09, | |
99 SARBB699_09, | |
100 SASNB029_09 | |
; | |
tree PAUP_1 = [&R] (((((((((((((1:0,2:0):0,3:0):0,4:0):0,5:0):0,6:0):0,7:0):0,8:0):0,9:0):0,10:0):0,11:0):0,12:0):0.006613,(13:7.817e-05,(((((((((((((((((((((14:-3.794e-05,49:3.794e-05):9.602e-05,50:-9.602e-05):3.268e-05,51:-6.468e-05):7.569e-05,19:-0.000108):2.253e-05,23:-8.734e-05):1.534e-05,27:-7.357e-05):1.120e-05,31:-6.374e-05):8.581e-06,35:-5.639e-05):6.822e-06,39:-5.068e-05):5.581e-06,43:-4.612e-05):4.670e-06,48:-4.241e-05):1.663e-05,(((((((((20:-6.075e-05,59:0.001581):3.069e-05,24:-3.069e-05):1.044e-05,28:-2.067e-05):5.331e-06,32:-1.567e-05):3.267e-06,36:-1.267e-05):2.225e-06,40:-1.067e-05):1.624e-06,44:-9.245e-06):4.242e-06,(((((((21:1.748e-06,(((((52:1.563e-05,54:-1.563e-05):7.896e-06,55:-7.896e-06):2.687e-06,56:-5.319e-06):1.372e-06,57:-4.031e-06):8.405e-07,58:-3.259e-06):0.001532):-2.660e-07,25:1.515e-06):-2.039e-07,29:1.340e-06):-1.621e-07,33:1.204e-06):-1.326e-07,37:1.096e-06):-1.110e-07,41:1.008e-06):-9.459e-08,45:9.343e-07):-8.665e-06):4.526e-06,46:-2.930e-06):-4.652e-05):2.981e-05,47:-1.978e-05):8.652e-07,42:-1.951e-05):8.431e-07,38:-1.927e-05):8.233e-07,34:-1.905e-05):8.055e-07,30:-1.886e-05):7.897e-07,26:-1.868e-05):7.756e-07,22:-1.852e-05):7.632e-07,18:-1.838e-05):7.524e-07,17:-1.826e-05):-7.633e-05):0.008629):0,(((((15:-3.616e-06,53:0.001523):1.827e-06,16:-1.827e-06):0.001913,(79:0.002259,82:0.003820):0.002645):0.001241,((((77:-8.585e-05,98:8.585e-05):0.001036,99:0.002042):0.002927,(((((((((((((83:0,84:0):0,85:0):0,86:0):0,87:0):0,88:0):0,89:0):0,90:0):0,91:0):0,92:0):0,93:0):0,94:0):0,95:0):0,96:0):0.005466):0.000417,((78:-0.000419,97:0.000419):0.002574,100:0.003723):0.003692):0.000902):0.001992,((((((((((((((60:-3.716e-06,80:0.001523):1.877e-06,61:-1.877e-06):6.387e-07,62:-1.264e-06):3.261e-07,63:-9.582e-07):1.998e-07,64:-7.748e-07):1.361e-07,65:-6.526e-07):9.930e-08,66:-5.654e-07):7.611e-08,68:-5.002e-07):6.052e-08,69:-4.495e-07):4.950e-08,71:-4.091e-07):4.142e-08,72:-3.762e-07):3.531e-08,73:-3.488e-07):4.383e-05,81:0.001476):0.002907,(67:0.001505,(((70:-6.612e-05,76:6.612e-05):3.340e-05,74:-3.340e-05):1.137e-05,75:-2.250e-05):0.001526):0.001608):0.001884):0.006757); | |
End; | |
begin characters; | |
dimensions nchar=2; | |
format datatype = geographic; | |
charstatelabels | |
1 latitude, | |
2 longitude | |
; | |
matrix | |
SAUPA645_10 4.5218 96.8576 | |
SAUPA642_10 -0.45 100.417 | |
SAUPA641_10 4.5218 96.8576 | |
SAUPA348_10 -4.03 103.13 | |
SAUPA330_10 2.8 98.9 | |
SAUPA325_10 4.5324 96.8477 | |
SAUPA324_10 4.2447 97.1861 | |
SAUPA129_09 4.9175 96.0506 | |
SARBB639_09 2.49 99.14 | |
SASNB002_09 -0.46896 100.323 | |
SAUPA069_09 -8.5 116.1 | |
SAUPA052_09 -9.48 119.23 | |
SASNB210_09 22.4818 94.6932 | |
SAUPA073_09 -8.48 115.55 | |
SAUPA072_09 -8.48 115.55 | |
SARBB638_09 8.1 113.4 | |
SARBB636_09 8.1 113.4 | |
SAUPA051_09 -9.48 119.23 | |
SAUPA053_09 -9.48 119.23 | |
SAUPA639_10 -8.3 117.8 | |
SAUPA366_10 -9.48 119.23 | |
SAUPA365_10 -9.48 119.23 | |
SAUPA364_10 -9.48 119.23 | |
SAUPA347_10 -8.245 117.993 | |
SAUPA346_10 -8.245 117.993 | |
SAUPA068_09 -8.5 116.1 | |
SAVSA376_10 -13.7333 116.433 | |
SAVSA377_10 -13.7333 116.433 | |
SAUPA322_10 -8.61 120.53 | |
SAUPA321_10 -8.61 120.53 | |
SAUPA320_10 -8.5 116.15 | |
SAUPA319_10 -8.5 116.15 | |
SASNB209_09 21.3719 93.9769 | |
SAUPA318_10 -8.12 115.09 | |
SAUPA067_09 -8.64 120.48 | |
SAUPA066_09 -8.64 120.48 | |
SAUPA637_10 -8.61 120.53 | |
GRACI494_09 19.53 98.27 | |
GRACI495_09 19.53 98.27 | |
SAUPA338_10 16.833 98.25 | |
SAUPA337_10 16.833 98.25 | |
SAUPA336_10 14.5 99.5 | |
SAUPA335_10 18.805 98.922 | |
LTOL529_07 -2 101 | |
SARBB604_09 12.51 92.49 | |
SARBB610_09 26 94.2 | |
SAUPA648_10 -7.67 111.18 | |
SAUPA647_10 -8.1 114.3 | |
SAUPA646_10 -8.1 114.3 | |
SAUPA644_10 -6.72 106.73 | |
SAUPA643_10 -6.9 106.9 | |
SAUPA329_10 -6.72 106.73 | |
SAUPA328_10 -6.72 106.73 | |
SAUPA327_10 -6.72 106.73 | |
SARBB635_09 8.1 113.4 | |
SAUPA358_10 7.955 124.803 | |
; | |
end; | |
begin notes; | |
alttaxnames tax_id = | |
[SAUPA645_10] 'BOLD:ACE9959' | |
[SAUPA642_10] 'BOLD:ACE9959' | |
[SAUPA641_10] 'BOLD:ACE9959' | |
[SAUPA348_10] 'BOLD:ACE9959' | |
[SAUPA330_10] 'BOLD:ACE9959' | |
[SAUPA325_10] 'BOLD:ACE9959' | |
[SAUPA324_10] 'BOLD:ACE9959' | |
[SAUPA129_09] 'BOLD:ACE9959' | |
[SARBB639_09] 'BOLD:ACE9959' | |
[SASNB003_09] 'BOLD:ACE9959' | |
[SASNB002_09] 'BOLD:ACE9959' | |
[SARBB733_09] 'BOLD:ACE9959' | |
[SAUPA069_09] 'BOLD:ACE9958' | |
[SAUPA052_09] 'BOLD:ACE9958' | |
[SASNB210_09] 'BOLD:AAA5977' | |
[SASNC2419_12] 'BOLD:AAA5977' | |
[SARBB601_09] 'BOLD:ACE9958' | |
[SARBB600_09] 'BOLD:ACE9958' | |
[SASNA999_09] 'BOLD:ACE9958' | |
[SAUPA073_09] 'BOLD:ACE9958' | |
[SAUPA072_09] 'BOLD:ACE9958' | |
[SARBB743_09] 'BOLD:ACE9958' | |
[SARBB742_09] 'BOLD:ACE9958' | |
[SARBB741_09] 'BOLD:ACE9958' | |
[SARBB740_09] 'BOLD:ACE9958' | |
[SARBB638_09] 'BOLD:ACE9958' | |
[SARBB636_09] 'BOLD:ACE9958' | |
[SAVSE192_12] 'BOLD:ACE9958' | |
[SAVSE191_12] 'BOLD:ACE9958' | |
[SASNB028_09] 'BOLD:ACE9958' | |
[SASNB027_09] 'BOLD:ACE9958' | |
[SAUPA051_09] 'BOLD:ACE9958' | |
[SAUPA053_09] 'BOLD:ACE9958' | |
[SAUPA639_10] 'BOLD:ACE9958' | |
[SAUPA366_10] 'BOLD:ACE9958' | |
[SAUPA365_10] 'BOLD:ACE9958' | |
[SAUPA364_10] 'BOLD:ACE9958' | |
[SAUPA347_10] 'BOLD:ACE9958' | |
[SAUPA346_10] 'BOLD:ACE9958' | |
[SAUPA068_09] 'BOLD:ACE9958' | |
[SASNB022_09] 'BOLD:ACE9958' | |
[SARBB643_09] 'BOLD:ACE9958' | |
[SAVSA376_10] 'BOLD:ACE9958' | |
[SAVSA377_10] 'BOLD:ACE9958' | |
[SASNB024_09] 'BOLD:ACE9958' | |
[SASNB023_09] 'BOLD:ACE9958' | |
[SAUPA322_10] 'BOLD:ACE9958' | |
[SAUPA321_10] 'BOLD:ACE9958' | |
[SAUPA320_10] 'BOLD:ACE9958' | |
[SARBB645_09] 'BOLD:ACE9958' | |
[SARBB646_09] 'BOLD:ACE9958' | |
[SAUPA319_10] 'BOLD:ACE9958' | |
[SASNB209_09] 'BOLD:AAA5977' | |
[SAUPA318_10] 'BOLD:ACE9958' | |
[SAUPA067_09] 'BOLD:ACE9958' | |
[SAUPA066_09] 'BOLD:ACE9958' | |
[SARBB640_09] 'BOLD:ACE9958' | |
[SAUPA637_10] 'BOLD:ACE9958' | |
[SARBB647_09] 'BOLD:ACE9958' | |
[GRACI494_09] 'BOLD:AAA5977' | |
[GRACI495_09] 'BOLD:AAA5977' | |
[SAUPA338_10] 'BOLD:AAA5977' | |
[SAUPA337_10] 'BOLD:AAA5977' | |
[SAUPA336_10] 'BOLD:AAA5977' | |
[SAUPA335_10] 'BOLD:AAA5977' | |
[SARBB620_09] 'BOLD:AAA5977' | |
[SARBB701_09] 'BOLD:AAA5977' | |
[SASNC1164_11] 'BOLD:AAA5977' | |
[SASNC1163_11] 'BOLD:AAA5977' | |
[SAVSE373_12] 'BOLD:AAA5977' | |
[SASNB894_10] 'BOLD:AAA5977' | |
[SASNB891_10] 'BOLD:AAA5977' | |
[SASNB889_10] 'BOLD:AAA5977' | |
[SASNB018_09] 'BOLD:AAA5977' | |
[SASNB189_09] 'BOLD:AAA5977' | |
[SARBB702_09] 'BOLD:AAA5977' | |
[LTOL529_07] 'BOLD:AAA5977' | |
[SASNB051_09] 'BOLD:AAA5977' | |
[SARBB604_09] 'BOLD:AAA5977' | |
[SARBB617_09] 'BOLD:AAA5977' | |
[SARBB615_09] 'BOLD:AAA5977' | |
[SARBB610_09] 'BOLD:AAA5977' | |
[SASNC1582_12] 'BOLD:AAA5977' | |
[SAUPA648_10] 'BOLD:AAA5977' | |
[SAUPA647_10] 'BOLD:AAA5977' | |
[SAUPA646_10] 'BOLD:AAA5977' | |
[SAUPA644_10] 'BOLD:AAA5977' | |
[SAUPA643_10] 'BOLD:AAA5977' | |
[SAUPA329_10] 'BOLD:AAA5977' | |
[SAUPA328_10] 'BOLD:AAA5977' | |
[SAUPA327_10] 'BOLD:AAA5977' | |
[SARBB745_09] 'BOLD:AAA5977' | |
[SARBB744_09] 'BOLD:AAA5977' | |
[SARBB739_09] 'BOLD:AAA5977' | |
[SARBB737_09] 'BOLD:AAA5977' | |
[SARBB635_09] 'BOLD:AAA5977' | |
[SAUPA358_10] 'BOLD:AAA5977' | |
[SARBB700_09] 'BOLD:AAA5977' | |
[SARBB699_09] 'BOLD:AAA5977' | |
[SASNB029_09] 'BOLD:AAA5977' | |
; | |
end; |
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