Created
May 10, 2016 13:27
-
-
Save rdmpage/86ec4f4f249a8de21959bdb83a4d2886 to your computer and use it in GitHub Desktop.
Cricula NEXUS
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #NEXUS | |
| Begin trees; [Treefile saved Thu Aug 20 21:42:14 2015] | |
| [! | |
| >Data file = /Users/rpage/Sites/geojson-phylogeny-demo/bold-api/service/tmp/SAUPA642-10/SAUPA642-10.nex | |
| >Neighbor-joining search settings: | |
| > Ties (if encountered) will be broken systematically | |
| > Distance measure = uncorrected ("p") | |
| > (Tree is unrooted) | |
| ] | |
| Translate | |
| 1 SAUPA645_10, | |
| 2 SAUPA642_10, | |
| 3 SAUPA641_10, | |
| 4 SAUPA348_10, | |
| 5 SAUPA330_10, | |
| 6 SAUPA325_10, | |
| 7 SAUPA324_10, | |
| 8 SAUPA129_09, | |
| 9 SARBB639_09, | |
| 10 SASNB003_09, | |
| 11 SASNB002_09, | |
| 12 SARBB733_09, | |
| 13 SAUPA069_09, | |
| 14 SAUPA052_09, | |
| 15 SASNB210_09, | |
| 16 SASNC2419_12, | |
| 17 SARBB601_09, | |
| 18 SARBB600_09, | |
| 19 SASNA999_09, | |
| 20 SAUPA073_09, | |
| 21 SAUPA072_09, | |
| 22 SARBB743_09, | |
| 23 SARBB742_09, | |
| 24 SARBB741_09, | |
| 25 SARBB740_09, | |
| 26 SARBB638_09, | |
| 27 SARBB636_09, | |
| 28 SAVSE192_12, | |
| 29 SAVSE191_12, | |
| 30 SASNB028_09, | |
| 31 SASNB027_09, | |
| 32 SAUPA051_09, | |
| 33 SAUPA053_09, | |
| 34 SAUPA639_10, | |
| 35 SAUPA366_10, | |
| 36 SAUPA365_10, | |
| 37 SAUPA364_10, | |
| 38 SAUPA347_10, | |
| 39 SAUPA346_10, | |
| 40 SAUPA068_09, | |
| 41 SASNB022_09, | |
| 42 SARBB643_09, | |
| 43 SAVSA376_10, | |
| 44 SAVSA377_10, | |
| 45 SASNB024_09, | |
| 46 SASNB023_09, | |
| 47 SAUPA322_10, | |
| 48 SAUPA321_10, | |
| 49 SAUPA320_10, | |
| 50 SARBB645_09, | |
| 51 SARBB646_09, | |
| 52 SAUPA319_10, | |
| 53 SASNB209_09, | |
| 54 SAUPA318_10, | |
| 55 SAUPA067_09, | |
| 56 SAUPA066_09, | |
| 57 SARBB640_09, | |
| 58 SAUPA637_10, | |
| 59 SARBB647_09, | |
| 60 GRACI494_09, | |
| 61 GRACI495_09, | |
| 62 SAUPA338_10, | |
| 63 SAUPA337_10, | |
| 64 SAUPA336_10, | |
| 65 SAUPA335_10, | |
| 66 SARBB620_09, | |
| 67 SARBB701_09, | |
| 68 SASNC1164_11, | |
| 69 SASNC1163_11, | |
| 70 SAVSE373_12, | |
| 71 SASNB894_10, | |
| 72 SASNB891_10, | |
| 73 SASNB889_10, | |
| 74 SASNB018_09, | |
| 75 SASNB189_09, | |
| 76 SARBB702_09, | |
| 77 LTOL529_07, | |
| 78 SASNB051_09, | |
| 79 SARBB604_09, | |
| 80 SARBB617_09, | |
| 81 SARBB615_09, | |
| 82 SARBB610_09, | |
| 83 SASNC1582_12, | |
| 84 SAUPA648_10, | |
| 85 SAUPA647_10, | |
| 86 SAUPA646_10, | |
| 87 SAUPA644_10, | |
| 88 SAUPA643_10, | |
| 89 SAUPA329_10, | |
| 90 SAUPA328_10, | |
| 91 SAUPA327_10, | |
| 92 SARBB745_09, | |
| 93 SARBB744_09, | |
| 94 SARBB739_09, | |
| 95 SARBB737_09, | |
| 96 SARBB635_09, | |
| 97 SAUPA358_10, | |
| 98 SARBB700_09, | |
| 99 SARBB699_09, | |
| 100 SASNB029_09 | |
| ; | |
| tree PAUP_1 = [&R] (((((((((((((1:0,2:0):0,3:0):0,4:0):0,5:0):0,6:0):0,7:0):0,8:0):0,9:0):0,10:0):0,11:0):0,12:0):0.006613,(13:7.817e-05,(((((((((((((((((((((14:-3.794e-05,49:3.794e-05):9.602e-05,50:-9.602e-05):3.268e-05,51:-6.468e-05):7.569e-05,19:-0.000108):2.253e-05,23:-8.734e-05):1.534e-05,27:-7.357e-05):1.120e-05,31:-6.374e-05):8.581e-06,35:-5.639e-05):6.822e-06,39:-5.068e-05):5.581e-06,43:-4.612e-05):4.670e-06,48:-4.241e-05):1.663e-05,(((((((((20:-6.075e-05,59:0.001581):3.069e-05,24:-3.069e-05):1.044e-05,28:-2.067e-05):5.331e-06,32:-1.567e-05):3.267e-06,36:-1.267e-05):2.225e-06,40:-1.067e-05):1.624e-06,44:-9.245e-06):4.242e-06,(((((((21:1.748e-06,(((((52:1.563e-05,54:-1.563e-05):7.896e-06,55:-7.896e-06):2.687e-06,56:-5.319e-06):1.372e-06,57:-4.031e-06):8.405e-07,58:-3.259e-06):0.001532):-2.660e-07,25:1.515e-06):-2.039e-07,29:1.340e-06):-1.621e-07,33:1.204e-06):-1.326e-07,37:1.096e-06):-1.110e-07,41:1.008e-06):-9.459e-08,45:9.343e-07):-8.665e-06):4.526e-06,46:-2.930e-06):-4.652e-05):2.981e-05,47:-1.978e-05):8.652e-07,42:-1.951e-05):8.431e-07,38:-1.927e-05):8.233e-07,34:-1.905e-05):8.055e-07,30:-1.886e-05):7.897e-07,26:-1.868e-05):7.756e-07,22:-1.852e-05):7.632e-07,18:-1.838e-05):7.524e-07,17:-1.826e-05):-7.633e-05):0.008629):0,(((((15:-3.616e-06,53:0.001523):1.827e-06,16:-1.827e-06):0.001913,(79:0.002259,82:0.003820):0.002645):0.001241,((((77:-8.585e-05,98:8.585e-05):0.001036,99:0.002042):0.002927,(((((((((((((83:0,84:0):0,85:0):0,86:0):0,87:0):0,88:0):0,89:0):0,90:0):0,91:0):0,92:0):0,93:0):0,94:0):0,95:0):0,96:0):0.005466):0.000417,((78:-0.000419,97:0.000419):0.002574,100:0.003723):0.003692):0.000902):0.001992,((((((((((((((60:-3.716e-06,80:0.001523):1.877e-06,61:-1.877e-06):6.387e-07,62:-1.264e-06):3.261e-07,63:-9.582e-07):1.998e-07,64:-7.748e-07):1.361e-07,65:-6.526e-07):9.930e-08,66:-5.654e-07):7.611e-08,68:-5.002e-07):6.052e-08,69:-4.495e-07):4.950e-08,71:-4.091e-07):4.142e-08,72:-3.762e-07):3.531e-08,73:-3.488e-07):4.383e-05,81:0.001476):0.002907,(67:0.001505,(((70:-6.612e-05,76:6.612e-05):3.340e-05,74:-3.340e-05):1.137e-05,75:-2.250e-05):0.001526):0.001608):0.001884):0.006757); | |
| End; | |
| begin characters; | |
| dimensions nchar=2; | |
| format datatype = geographic; | |
| charstatelabels | |
| 1 latitude, | |
| 2 longitude | |
| ; | |
| matrix | |
| SAUPA645_10 4.5218 96.8576 | |
| SAUPA642_10 -0.45 100.417 | |
| SAUPA641_10 4.5218 96.8576 | |
| SAUPA348_10 -4.03 103.13 | |
| SAUPA330_10 2.8 98.9 | |
| SAUPA325_10 4.5324 96.8477 | |
| SAUPA324_10 4.2447 97.1861 | |
| SAUPA129_09 4.9175 96.0506 | |
| SARBB639_09 2.49 99.14 | |
| SASNB002_09 -0.46896 100.323 | |
| SAUPA069_09 -8.5 116.1 | |
| SAUPA052_09 -9.48 119.23 | |
| SASNB210_09 22.4818 94.6932 | |
| SAUPA073_09 -8.48 115.55 | |
| SAUPA072_09 -8.48 115.55 | |
| SARBB638_09 8.1 113.4 | |
| SARBB636_09 8.1 113.4 | |
| SAUPA051_09 -9.48 119.23 | |
| SAUPA053_09 -9.48 119.23 | |
| SAUPA639_10 -8.3 117.8 | |
| SAUPA366_10 -9.48 119.23 | |
| SAUPA365_10 -9.48 119.23 | |
| SAUPA364_10 -9.48 119.23 | |
| SAUPA347_10 -8.245 117.993 | |
| SAUPA346_10 -8.245 117.993 | |
| SAUPA068_09 -8.5 116.1 | |
| SAVSA376_10 -13.7333 116.433 | |
| SAVSA377_10 -13.7333 116.433 | |
| SAUPA322_10 -8.61 120.53 | |
| SAUPA321_10 -8.61 120.53 | |
| SAUPA320_10 -8.5 116.15 | |
| SAUPA319_10 -8.5 116.15 | |
| SASNB209_09 21.3719 93.9769 | |
| SAUPA318_10 -8.12 115.09 | |
| SAUPA067_09 -8.64 120.48 | |
| SAUPA066_09 -8.64 120.48 | |
| SAUPA637_10 -8.61 120.53 | |
| GRACI494_09 19.53 98.27 | |
| GRACI495_09 19.53 98.27 | |
| SAUPA338_10 16.833 98.25 | |
| SAUPA337_10 16.833 98.25 | |
| SAUPA336_10 14.5 99.5 | |
| SAUPA335_10 18.805 98.922 | |
| LTOL529_07 -2 101 | |
| SARBB604_09 12.51 92.49 | |
| SARBB610_09 26 94.2 | |
| SAUPA648_10 -7.67 111.18 | |
| SAUPA647_10 -8.1 114.3 | |
| SAUPA646_10 -8.1 114.3 | |
| SAUPA644_10 -6.72 106.73 | |
| SAUPA643_10 -6.9 106.9 | |
| SAUPA329_10 -6.72 106.73 | |
| SAUPA328_10 -6.72 106.73 | |
| SAUPA327_10 -6.72 106.73 | |
| SARBB635_09 8.1 113.4 | |
| SAUPA358_10 7.955 124.803 | |
| ; | |
| end; | |
| begin notes; | |
| alttaxnames tax_id = | |
| [SAUPA645_10] 'BOLD:ACE9959' | |
| [SAUPA642_10] 'BOLD:ACE9959' | |
| [SAUPA641_10] 'BOLD:ACE9959' | |
| [SAUPA348_10] 'BOLD:ACE9959' | |
| [SAUPA330_10] 'BOLD:ACE9959' | |
| [SAUPA325_10] 'BOLD:ACE9959' | |
| [SAUPA324_10] 'BOLD:ACE9959' | |
| [SAUPA129_09] 'BOLD:ACE9959' | |
| [SARBB639_09] 'BOLD:ACE9959' | |
| [SASNB003_09] 'BOLD:ACE9959' | |
| [SASNB002_09] 'BOLD:ACE9959' | |
| [SARBB733_09] 'BOLD:ACE9959' | |
| [SAUPA069_09] 'BOLD:ACE9958' | |
| [SAUPA052_09] 'BOLD:ACE9958' | |
| [SASNB210_09] 'BOLD:AAA5977' | |
| [SASNC2419_12] 'BOLD:AAA5977' | |
| [SARBB601_09] 'BOLD:ACE9958' | |
| [SARBB600_09] 'BOLD:ACE9958' | |
| [SASNA999_09] 'BOLD:ACE9958' | |
| [SAUPA073_09] 'BOLD:ACE9958' | |
| [SAUPA072_09] 'BOLD:ACE9958' | |
| [SARBB743_09] 'BOLD:ACE9958' | |
| [SARBB742_09] 'BOLD:ACE9958' | |
| [SARBB741_09] 'BOLD:ACE9958' | |
| [SARBB740_09] 'BOLD:ACE9958' | |
| [SARBB638_09] 'BOLD:ACE9958' | |
| [SARBB636_09] 'BOLD:ACE9958' | |
| [SAVSE192_12] 'BOLD:ACE9958' | |
| [SAVSE191_12] 'BOLD:ACE9958' | |
| [SASNB028_09] 'BOLD:ACE9958' | |
| [SASNB027_09] 'BOLD:ACE9958' | |
| [SAUPA051_09] 'BOLD:ACE9958' | |
| [SAUPA053_09] 'BOLD:ACE9958' | |
| [SAUPA639_10] 'BOLD:ACE9958' | |
| [SAUPA366_10] 'BOLD:ACE9958' | |
| [SAUPA365_10] 'BOLD:ACE9958' | |
| [SAUPA364_10] 'BOLD:ACE9958' | |
| [SAUPA347_10] 'BOLD:ACE9958' | |
| [SAUPA346_10] 'BOLD:ACE9958' | |
| [SAUPA068_09] 'BOLD:ACE9958' | |
| [SASNB022_09] 'BOLD:ACE9958' | |
| [SARBB643_09] 'BOLD:ACE9958' | |
| [SAVSA376_10] 'BOLD:ACE9958' | |
| [SAVSA377_10] 'BOLD:ACE9958' | |
| [SASNB024_09] 'BOLD:ACE9958' | |
| [SASNB023_09] 'BOLD:ACE9958' | |
| [SAUPA322_10] 'BOLD:ACE9958' | |
| [SAUPA321_10] 'BOLD:ACE9958' | |
| [SAUPA320_10] 'BOLD:ACE9958' | |
| [SARBB645_09] 'BOLD:ACE9958' | |
| [SARBB646_09] 'BOLD:ACE9958' | |
| [SAUPA319_10] 'BOLD:ACE9958' | |
| [SASNB209_09] 'BOLD:AAA5977' | |
| [SAUPA318_10] 'BOLD:ACE9958' | |
| [SAUPA067_09] 'BOLD:ACE9958' | |
| [SAUPA066_09] 'BOLD:ACE9958' | |
| [SARBB640_09] 'BOLD:ACE9958' | |
| [SAUPA637_10] 'BOLD:ACE9958' | |
| [SARBB647_09] 'BOLD:ACE9958' | |
| [GRACI494_09] 'BOLD:AAA5977' | |
| [GRACI495_09] 'BOLD:AAA5977' | |
| [SAUPA338_10] 'BOLD:AAA5977' | |
| [SAUPA337_10] 'BOLD:AAA5977' | |
| [SAUPA336_10] 'BOLD:AAA5977' | |
| [SAUPA335_10] 'BOLD:AAA5977' | |
| [SARBB620_09] 'BOLD:AAA5977' | |
| [SARBB701_09] 'BOLD:AAA5977' | |
| [SASNC1164_11] 'BOLD:AAA5977' | |
| [SASNC1163_11] 'BOLD:AAA5977' | |
| [SAVSE373_12] 'BOLD:AAA5977' | |
| [SASNB894_10] 'BOLD:AAA5977' | |
| [SASNB891_10] 'BOLD:AAA5977' | |
| [SASNB889_10] 'BOLD:AAA5977' | |
| [SASNB018_09] 'BOLD:AAA5977' | |
| [SASNB189_09] 'BOLD:AAA5977' | |
| [SARBB702_09] 'BOLD:AAA5977' | |
| [LTOL529_07] 'BOLD:AAA5977' | |
| [SASNB051_09] 'BOLD:AAA5977' | |
| [SARBB604_09] 'BOLD:AAA5977' | |
| [SARBB617_09] 'BOLD:AAA5977' | |
| [SARBB615_09] 'BOLD:AAA5977' | |
| [SARBB610_09] 'BOLD:AAA5977' | |
| [SASNC1582_12] 'BOLD:AAA5977' | |
| [SAUPA648_10] 'BOLD:AAA5977' | |
| [SAUPA647_10] 'BOLD:AAA5977' | |
| [SAUPA646_10] 'BOLD:AAA5977' | |
| [SAUPA644_10] 'BOLD:AAA5977' | |
| [SAUPA643_10] 'BOLD:AAA5977' | |
| [SAUPA329_10] 'BOLD:AAA5977' | |
| [SAUPA328_10] 'BOLD:AAA5977' | |
| [SAUPA327_10] 'BOLD:AAA5977' | |
| [SARBB745_09] 'BOLD:AAA5977' | |
| [SARBB744_09] 'BOLD:AAA5977' | |
| [SARBB739_09] 'BOLD:AAA5977' | |
| [SARBB737_09] 'BOLD:AAA5977' | |
| [SARBB635_09] 'BOLD:AAA5977' | |
| [SAUPA358_10] 'BOLD:AAA5977' | |
| [SARBB700_09] 'BOLD:AAA5977' | |
| [SARBB699_09] 'BOLD:AAA5977' | |
| [SASNB029_09] 'BOLD:AAA5977' | |
| ; | |
| end; |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment