rdmpage’s gists

rdmpage / index.html

Created December 6, 2012 14:02

Javascript phylogeny viewer

	<!DOCTYPE html>
	<html>
	<head>
	<meta charset="utf-8" />
	<title>Javascript Phylogeny Viewer</title>
	<style type="text/css" title="text/css">
	@import url("/style.css?20120730");
	</style>
	<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.8.3/jquery.min.js"></script>
	<script type="text/javascript" src="http://blog.accursedware.com/jquery-svgpan/jquery-svgpan.js"></script>

rdmpage / 2236C72B-206D-405B-AFAC-EBA246EC8AE5.json

Last active October 13, 2015 07:57

ZooBank JSON for 2236C72B-206D-405B-AFAC-EBA246EC8AE5

	[
	{
	"tnuuuid": "2236C72B-206D-405B-AFAC-EBA246EC8AE5",
	"OriginalReferenceUUID": "BC94AF66-4059-4CCA-81D7-FEC49B067B77",
	"protonymuuid": "288E04E0-BA61-471D-BA62-47C10CDDC15C",
	"label": "Belonoperca Fowler & Bean 1930",
	"value": "Belonoperca Fowler & Bean 1930",
	"lsid": "urn:lsid:zoobank.org:act:288E04E0-BA61-471D-BA62-47C10CDDC15C",
	"parentname": "",
	"namestring": "Belonoperca",

rdmpage / zoobank.dot

Created November 28, 2012 10:43

ZooBank data model

	digraph {

	1758 -> 1930 -> 1998 -> 2004;

	/* publications */
	"BC94AF66-4059-4CCA-81D7-FEC49B067B77" [shape="box",label="The fishes of the families Amiidae, Chandidae, Duleidae, and Serranidae\nBC94AF66-4059-4CCA-81D7-FEC49B067B77\nhttp://biostor.org/reference/105997"];
	"F8ECE6CE-E77F-4768-A563-62E416592874" [shape="box",label="Belonoperca pylei, a new species of seabass...\nF8ECE6CE-E77F-4768-A563-62E416592874\nDOI:10.1007/BF02725185"];

	/* 1930 */

rdmpage / iriscouch.txt

Created October 4, 2012 16:18

Replicate local CouchDB to iriscouch

curl http://admin:password@localhost:5984/_replicate -H 'Content-Type: application/json' -d '{ "source": "afd", "target": "https://admin:[email protected]/afd" , "proxy":"http://wwwcache.gla.ac.uk:8080"}'

rdmpage / cloudant_replication.txt

Created October 4, 2012 15:36

Replicate local CouchDB database to Cloudant (replace

	curl http://admin:password@localhost:5984/_replicate -H 'Content-Type: application/json' -d '{ "source": "afd", "target": "https://admin:[email protected]/afd" , "proxy":"http://wwwcache.gla.ac.uk:8080"}'

	replace "admin" and "password" by username and password

rdmpage / .gitignore_global

Created October 4, 2012 13:44

Global .gitignore file, set using: git config --global core.excludesfile ~/.gitignore_global

	# Compiled source #
	###################
	*.com
	*.class
	*.dll
	*.exe
	*.o
	*.so

	# Compiled Object files

rdmpage / Notonemouridae.svg

Created September 24, 2012 10:46

Notonemouridae

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rdmpage / Design document

Created September 24, 2012 09:37

Full text search in Cloudant

	{
	"_id": "_design/lookup",
	"_rev": "2-2763d098bce604230bfc247ca06cba05",
	"language": "javascript",
	"indexes": {
	"all": {
	"index": "function(doc) {\n if (doc.title)\n {\n index(\"title\", doc.title, {\"store\": \"yes\"});\n }\n }"
	}
	}
	}

rdmpage / replicate-couchdb.txt

Created September 4, 2012 10:18

Replicate CouchDB

	To ensure local CouchDB database is externally accessible first go to the configuration page

	http://localhost:5984/_utils/config.html

	and change bind_address (httpd section) from 127.0.0.1 to 0.0.0.0 then restart
	CouchDB.

	To confirm, use command

	lsof -i -n -P \| grep LISTEN

rdmpage / SnippetFile

Created August 14, 2012 21:50

HTML multibyte string

$html = mb_convert_encoding($html, 'UTF-8', 'HTML-ENTITIES');

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