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<attvalue for="startyr" value="2007"></attvalue> | |
<attvalue for="endyr" value="2008"></attvalue> | |
<attvalue for="strength" value="0.282344"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="5041" source="2007_1" target="topic_20" weight="0.403095"> | |
<attvalues> | |
<attvalue for="startyr" value="2007"></attvalue> | |
<attvalue for="endyr" value="2008"></attvalue> | |
<attvalue for="strength" value="0.403095"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="5221" source="2007_18" target="topic_19" weight="0.815182"> | |
<attvalues> | |
<attvalue for="startyr" value="2007"></attvalue> | |
<attvalue for="endyr" value="2008"></attvalue> | |
<attvalue for="strength" value="0.815182"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="5881" source="2009_21" target="topic_17" weight="0.54789"> | |
<attvalues> | |
<attvalue for="startyr" value="2009"></attvalue> | |
<attvalue for="endyr" value="2010"></attvalue> | |
<attvalue for="strength" value="0.54789"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="5882" source="2009_21" target="topic_07" weight="0.113713"> | |
<attvalues> | |
<attvalue for="startyr" value="2009"></attvalue> | |
<attvalue for="endyr" value="2010"></attvalue> | |
<attvalue for="strength" value="0.113713"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="6197" source="2009_9" target="topic_19" weight="0.812588"> | |
<attvalues> | |
<attvalue for="startyr" value="2009"></attvalue> | |
<attvalue for="endyr" value="2010"></attvalue> | |
<attvalue for="strength" value="0.812588"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="543" source="1992_22" target="topic_18" weight="0.103923"> | |
<attvalues> | |
<attvalue for="startyr" value="1992"></attvalue> | |
<attvalue for="endyr" value="1993"></attvalue> | |
<attvalue for="strength" value="0.103923"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="541" source="1992_22" target="topic_16" weight="0.318033"> | |
<attvalues> | |
<attvalue for="startyr" value="1992"></attvalue> | |
<attvalue for="endyr" value="1993"></attvalue> | |
<attvalue for="strength" value="0.318033"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="542" source="1992_22" target="topic_07" weight="0.206075"> | |
<attvalues> | |
<attvalue for="startyr" value="1992"></attvalue> | |
<attvalue for="endyr" value="1993"></attvalue> | |
<attvalue for="strength" value="0.206075"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="644" source="1992_5" target="topic_03" weight="0.10542"> | |
<attvalues> | |
<attvalue for="startyr" value="1992"></attvalue> | |
<attvalue for="endyr" value="1993"></attvalue> | |
<attvalue for="strength" value="0.10542"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="642" source="1992_5" target="topic_07" weight="0.134688"> | |
<attvalues> | |
<attvalue for="startyr" value="1992"></attvalue> | |
<attvalue for="endyr" value="1993"></attvalue> | |
<attvalue for="strength" value="0.134688"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="643" source="1992_5" target="topic_19" weight="0.117886"> | |
<attvalues> | |
<attvalue for="startyr" value="1992"></attvalue> | |
<attvalue for="endyr" value="1993"></attvalue> | |
<attvalue for="strength" value="0.117886"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="641" source="1992_5" target="topic_20" weight="0.376423"> | |
<attvalues> | |
<attvalue for="startyr" value="1992"></attvalue> | |
<attvalue for="endyr" value="1993"></attvalue> | |
<attvalue for="strength" value="0.376423"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="943" source="1993_18" target="topic_03" weight="0.103391"> | |
<attvalues> | |
<attvalue for="startyr" value="1993"></attvalue> | |
<attvalue for="endyr" value="1994"></attvalue> | |
<attvalue for="strength" value="0.103391"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="942" source="1993_18" target="topic_07" weight="0.172162"> | |
<attvalues> | |
<attvalue for="startyr" value="1993"></attvalue> | |
<attvalue for="endyr" value="1994"></attvalue> | |
<attvalue for="strength" value="0.172162"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="941" source="1993_18" target="topic_20" weight="0.396373"> | |
<attvalues> | |
<attvalue for="startyr" value="1993"></attvalue> | |
<attvalue for="endyr" value="1994"></attvalue> | |
<attvalue for="strength" value="0.396373"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="6041" source="2009_29" target="topic_12" weight="0.551113"> | |
<attvalues> | |
<attvalue for="startyr" value="2009"></attvalue> | |
<attvalue for="endyr" value="2010"></attvalue> | |
<attvalue for="strength" value="0.551113"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="6042" source="2009_29" target="topic_05" weight="0.130398"> | |
<attvalues> | |
<attvalue for="startyr" value="2009"></attvalue> | |
<attvalue for="endyr" value="2010"></attvalue> | |
<attvalue for="strength" value="0.130398"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="4821" source="2005_29" target="topic_12" weight="0.38913"> | |
<attvalues> | |
<attvalue for="startyr" value="2005"></attvalue> | |
<attvalue for="endyr" value="2006"></attvalue> | |
<attvalue for="strength" value="0.38913"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="4822" source="2005_29" target="topic_05" weight="0.272925"> | |
<attvalues> | |
<attvalue for="startyr" value="2005"></attvalue> | |
<attvalue for="endyr" value="2006"></attvalue> | |
<attvalue for="strength" value="0.272925"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="3021" source="1999_28" target="topic_18" weight="0.516193"> | |
<attvalues> | |
<attvalue for="startyr" value="1999"></attvalue> | |
<attvalue for="endyr" value="2000"></attvalue> | |
<attvalue for="strength" value="0.516193"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="3022" source="1999_28" target="topic_15" weight="0.153693"> | |
<attvalues> | |
<attvalue for="startyr" value="1999"></attvalue> | |
<attvalue for="endyr" value="2000"></attvalue> | |
<attvalue for="strength" value="0.153693"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="2702" source="1999_0" target="topic_18" weight="0.190377"> | |
<attvalues> | |
<attvalue for="startyr" value="1999"></attvalue> | |
<attvalue for="endyr" value="2000"></attvalue> | |
<attvalue for="strength" value="0.190377"></attvalue> | |
</attvalues> | |
</edge> | |
<edge id="2701" source="1999_0" target="topic_12" weight="0.455116"> | |
<attvalues> | |
<attvalue for="startyr" value="1999"></attvalue> | |
<attvalue for="endyr" value="2000"></attvalue> | |
<attvalue for="strength" value="0.455116"></attvalue> | |
</attvalues> | |
</edge> | |
</edges> | |
</graph> | |
</gexf> |
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#modal { | |
position:fixed; | |
left:150px; | |
top:20px; | |
z-index:1; | |
background: white; | |
border: 1px black solid; | |
box-shadow: 10px 10px 5px #888888; | |
display: none; | |
} | |
#content { | |
max-height: 400px; | |
overflow: auto; | |
} | |
#modalClose { | |
position: absolute; | |
top: -0px; | |
right: -0px; | |
z-index: 1; | |
} | |
tr { | |
border: 1px gray solid; | |
} | |
td { | |
font-size: 10px; | |
} | |
td.data { | |
font-weight: 900; | |
} | |
.tick line { | |
shape-rendering: crispEdges; | |
stroke: #000; | |
} | |
line.minor { | |
stroke: #777; | |
stroke-dasharray: 2,2; | |
} | |
path.domain { | |
fill: none; | |
stroke: black; | |
} | |
.inactive, .tentative { | |
stroke: darkgray; | |
stroke-width: 4px; | |
stroke-dasharray: 5 5; | |
} | |
.tentative { | |
opacity: .5; | |
} | |
.active { | |
stroke: black; | |
stroke-width: 4px; | |
stroke-dasharray: 0; | |
} | |
circle { | |
fill: red; | |
} | |
rect { | |
fill: darkgray; | |
} | |
#controls { | |
position: fixed; | |
bottom: 50px; | |
left: 20px; | |
} | |
#brushDiv { | |
position: fixed; | |
bottom: 100px; | |
left: 20px; | |
right: 20px; | |
height:50px; | |
background: white; | |
opacity: .75; | |
} | |
.brush .extent { | |
fill-opacity: .90; | |
shape-rendering: crispEdges; | |
} | |
svg { | |
width: 100%; | |
height:100%; | |
} |
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gexfD3 = | |
function () { | |
var nodes = []; | |
var links = []; | |
var linksFile = ""; | |
var fileName = ""; | |
var xExtent = []; | |
var yExtent = []; | |
var nodeScale = [1,10]; | |
var layoutSize = [500,500]; | |
var sizeExtent = []; | |
var dAtt = ""; | |
var dynamicExtent = []; | |
var sizeScale, xScale, yScale, dynamicScale; | |
var gexfD3Brush = d3.svg.brush(); | |
var linkAttributes = []; | |
var nodeAttributes = []; | |
var nodeHash = {}; | |
this.graph = function(gexfParsed) { | |
if (!arguments.length) return true; | |
var gNodes = gexfParsed.nodes; | |
var gLinks = gexfParsed.edges; | |
nodes = []; | |
links = []; | |
nodeHash = {}; | |
//Create JSON nodes array | |
var x = 0; | |
gNodes.forEach(function(gNode) { | |
var newNode = {id: x, properties: {}}; | |
newNode.label = gNode.label || gNode.id; | |
newNode.rgbColor = gNode.viz.color || "rgb(122,122,122)"; | |
newNode.x = gNode.viz.position.x; | |
newNode.y = gNode.viz.position.y; | |
newNode.z = gNode.viz.position.z; | |
newNode.originalX = newNode.x; | |
newNode.originalY = newNode.y; | |
newNode.size = gNode.viz.size; | |
nodeHash[gNode.id] = newNode; | |
for (y in gNode.attributes) { | |
if (!(typeof(gNode.attributes[y]) === "undefined") && !(gNode.attributes[y].toString() == "NaN" )) { | |
newNode.properties[y] = gNode.attributes[y]; | |
} | |
} | |
nodes.push(newNode); | |
x++; | |
}) | |
//get node attributes based on attributes in the first node | |
//this won't work for assymetrical node attributes | |
nodeAttributes = d3.keys(nodes[0].properties); | |
//Create JSON links array | |
var x = 0; | |
while (x < gLinks.length) { | |
var newLink = {id: x, properties: {}}; | |
newLink.source = nodeHash[gLinks[x].source]; | |
newLink.target = nodeHash[gLinks[x].target]; | |
//process attributes | |
for (y in gLinks[x].attributes) { | |
newLink.properties[y] = gLinks[x].attributes[y]; | |
y++; | |
} | |
links.push(newLink) | |
x++; | |
} | |
linkAttributes = d3.keys(links[0].properties); | |
sizeExtent = d3.extent(nodes, function(d) {return parseFloat(d.size)}) | |
sizeScale = d3.scale.linear().domain(sizeExtent).range(nodeScale); | |
return this; | |
} | |
this.nodes = function(incNodes) { | |
if (!arguments.length) return nodes; | |
nodes = incNodes; | |
return this; | |
} | |
this.links = function(incLinks) { | |
if (!arguments.length) return links; | |
links = incLinks | |
return this; | |
} | |
this.linkAttributes = function(incAtts) { | |
if (!arguments.length) return linkAttributes; | |
linkAttributes = incAtts; | |
return this; | |
} | |
this.nodeAttributes = function(incAtts) { | |
if (!arguments.length) return nodeAttributes; | |
nodeAttributes = incAtts; | |
return this; | |
} | |
this.nodeScale = function(incScale) { | |
if (!arguments.length) return sizeScale; | |
nodeScale = incScale; | |
sizeScale = d3.scale.linear().domain(sizeExtent).range(nodeScale); | |
return this; | |
} | |
this.overwriteLinks = function(incLinks) { | |
if (!arguments.length) return nodes; | |
data = incLinks; | |
//OVERWRITE links for parallel links | |
links = []; | |
for (x in data) { | |
var newLink = {id: x, properties: {}}; | |
newLink.source = nodeHash[data[x].source]; | |
newLink.target = nodeHash[data[x].target]; | |
newLink.id = x; | |
newLink.properties.type = "base"; | |
newLink.properties.year = data[x].year; | |
//process attributes | |
if (newLink.source && newLink.target) { | |
links.push(newLink); | |
} | |
x++; | |
} | |
linkAttributes = d3.keys(links[0].properties); | |
return this; | |
} | |
this.size = function(incSize) { | |
if (!arguments.length) return layoutSize; | |
//Measure | |
layoutSize = incSize; | |
xExtent = d3.extent(nodes, function(d) {return parseFloat(d.x)}) | |
yExtent = d3.extent(nodes, function(d) {return parseFloat(d.y)}) | |
xScale = d3.scale.linear().domain(xExtent).range([0,layoutSize[0]]); | |
yScale = d3.scale.linear().domain(yExtent).range([layoutSize[1],0]); | |
return this; | |
} | |
this.dynamicAttribute = function(incAtt) { | |
if (!arguments.length) return dAtt; | |
dAtt = incAtt; | |
var nDE = [Infinity, -Infinity]; | |
var lDE = [Infinity, -Infinity]; | |
if (nodeAttributes.indexOf(dAtt) > -1) { | |
//currently filters out 0 entries | |
// nDE = d3.extent(nodes, function(d) {return parseInt(d.properties[dAtt])}) | |
nDE = d3.extent(nodes.filter(function(p) {return p.properties[dAtt] != 0}), function(d) {return parseInt(d.properties[dAtt])}) | |
} | |
if (linkAttributes.indexOf(dAtt) > -1) { | |
// lDE = d3.extent(links, function(d) {return parseInt(d.properties[dAtt])}) | |
lDE = d3.extent(links.filter(function(p) {return p.properties[dAtt] != 0}), function(d) {return parseInt(d.properties[dAtt])}) | |
} | |
dynamicExtent = [Math.min(nDE[0],lDE[0]), Math.max(nDE[1],lDE[1])] | |
dynamicScale = d3.scale.linear().domain(dynamicExtent).range([0,layoutSize[0]]); | |
return this; | |
} | |
this.dynamicBrush = function(incSelection) { | |
if (!arguments.length) return gexfD3Brush; | |
gexfD3Brush | |
.x(dynamicScale) | |
.extent(dynamicExtent) | |
var brushAxis = d3.svg.axis().scale(dynamicScale).orient("bottom").tickSize(-40).ticks(20); | |
incSelection.append("g").attr("id", "bgAxis").append("g").attr("transform", "translate(50,35)").call(brushAxis) | |
incSelection.append("g").attr("id", "fgBrush").attr("transform", "translate(50,0)") | |
.call(gexfD3Brush) | |
.selectAll("rect").attr("height", 35); | |
return this; | |
} | |
this.xScale = function(newScale) { | |
if (!arguments.length) return xScale; | |
xScale = newScale; | |
return this; | |
} | |
this.yScale = function(newScale) { | |
if (!arguments.length) return yScale; | |
yScale = newScale; | |
return this; | |
} | |
return this; | |
} |
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<html xmlns="http://www.w3.org/1999/xhtml"> | |
<head> | |
<title>GEXF D3 w/ Dynamic Brushing and Reprojecting</title> | |
<meta charset="utf-8" /> | |
<link type="text/css" rel="stylesheet" href="gexfd3.css" /> | |
</head> | |
<script src="http://d3js.org/d3.v3.min.js"></script> | |
<script src="http://d3js.org/colorbrewer.v1.min.js"></script> | |
<script src="parser.js" type="text/javascript"> | |
</script> | |
<script src="gexfd3.js" type="text/javascript"> | |
</script> | |
<body onload="loadGraph('cosit.gexf')"> | |
<div id="vizcontainer" style="width:100%;height:100%"> | |
<svg id="graphSVG" style="border:1px lightgray solid;"> | |
<g id="graphG" /> | |
<div id="modal"><div id="content"></div><button id="modalClose" onclick="nodeFocus=false;nodeOut();d3.select('#modal').style('display','none');">X</button></div> | |
</div> | |
<div id="controls"> | |
</div> | |
<div id="brushDiv"><svg style="width:100%;height:50px;"><g id="brushG" class="brush"></g></svg></div> | |
<footer> | |
<script> | |
nodeFocus = false; | |
currentBrush =[0,0]; | |
docHash = {}; | |
allLinks = []; | |
currentScale = 0; | |
function loadGraph(sourceGEXF) { | |
newGEXF = GexfParser.fetch(sourceGEXF); | |
gD3 = gexfD3().graph(newGEXF).size([1000,1000]).dynamicAttribute("startyr"); | |
force = d3.layout.force() | |
.charge(-500) | |
.linkDistance(150) | |
.size([1000, 1000]) | |
.gravity(.1) | |
.on("tick", redrawGraph) | |
d3.select("#brushG").call(gD3.dynamicBrush); | |
gD3.dynamicBrush().on("brush", brushMove); | |
zoom = d3.behavior.zoom() | |
.scaleExtent([.1, 10]) | |
.on("zoom", zoomed); | |
allLinks = gD3.links(); | |
brushMove(); | |
d3.select("svg").call(zoom); | |
createControls(); | |
zoomed(); | |
} | |
function highlightNeighbors(d,i) { | |
var nodeNeighbors = findNeighbors(d,i); | |
d3.selectAll("g.node").each(function(p) { | |
var isNeighbor = nodeNeighbors.nodes.indexOf(p); | |
d3.select(this).select("circle") | |
.style("opacity", isNeighbor > -1 ? 1 : .25) | |
.style("stroke-width", isNeighbor > -1 ? 3 : 1) | |
.style("stroke", isNeighbor > -1 ? "blue" : "white") | |
}) | |
d3.selectAll("line.link") | |
.style("stroke-width", function (d) {return nodeNeighbors.links.indexOf(d) > -1 ? 2 : 1}) | |
.style("opacity", function (d) {return nodeNeighbors.links.indexOf(d) > -1 ? 1 : .25}) | |
} | |
function findNeighbors(d,i) { | |
neighborArray = [d]; | |
var linkArray = []; | |
var linksArray = d3.selectAll("line.link").filter(function(p) {return p.source == d || p.target == d}).each(function(p) { | |
neighborArray.indexOf(p.source) == -1 ? neighborArray.push(p.source) : null; | |
neighborArray.indexOf(p.target) == -1 ? neighborArray.push(p.target) : null; | |
linkArray.push(p); | |
}) | |
// neighborArray = d3.set(neighborArray).keys(); | |
return {nodes: neighborArray, links: linkArray}; | |
} | |
function zoomed() { | |
force.stop(); | |
var canvWidth = parseInt(d3.select("#vizcontainer").style("width")); | |
var canvHeight = parseInt(d3.select("#vizcontainer").style("height")); | |
if (currentScale != zoom.scale()) { | |
currentScale = zoom.scale(); | |
var halfCanvas = canvHeight / 2; | |
var zoomLevel = halfCanvas * currentScale; | |
gD3.xScale().range([halfCanvas - zoomLevel, halfCanvas + zoomLevel]); | |
gD3.yScale().range([halfCanvas + zoomLevel, halfCanvas - zoomLevel]); | |
redrawGraph(); | |
} | |
var canvasTranslate = zoom.translate(); | |
d3.select("#graphG").attr("transform", "translate("+canvasTranslate[0]+","+canvasTranslate[1]+")") | |
} | |
function createControls() { | |
d3.select("#controls").append("button").attr("class", "origButton").html("Force On").on("click", function() { | |
force.start();}) | |
d3.select("#controls").append("button").attr("class", "origButton").html("Force Off").on("click", function() { | |
force.stop();}) | |
d3.select("#controls").append("button").attr("class", "origButton").html("Reset Layout").on("click", function() { | |
force.stop(); | |
gD3.nodes().forEach(function (el) {el.x = el.originalX;el.px = el.originalX;el.y = el.originalY;el.py = el.originalY;}); | |
currentBrush = [0,0]; | |
brushMove(); | |
redrawGraph(); | |
}) | |
d3.select("#controls").append("button").attr("class", "origButton").html("Reset Colors").on("click", function() { | |
var sizeScale = gD3.nodeScale(); | |
d3.selectAll("circle") | |
.attr("r", function (d) {return sizeScale(d.size)}) | |
.style("fill", function(d) {return d.rgbColor}) | |
.style("opacity", 1); | |
d3.selectAll("line.link").style("stroke", "black"); | |
}) | |
d3.select("#controls").append("button").attr("class", "origButton").html("N-Partite").on("click", function() { | |
collapseNetwork("base"); | |
}) | |
d3.select("#controls").selectAll("button.networkProjectionButton").data( | |
d3.set(gD3.nodes().map(function(el) {return el.properties.type})).values() | |
) | |
.enter() | |
.append("button") | |
.attr("class", "networkProjectionButton") | |
.on("click", function(d) {collapseNetwork(d)}) | |
.html(function(d) {return d + " Only"}); | |
d3.select("#controls").selectAll("button.nodeButtons").data(gD3.nodeAttributes()) | |
.enter() | |
.append("button") | |
.attr("class", "nodeButtons") | |
.on("click", nodeButtonClick) | |
.html(function(d) {return d}); | |
d3.select("#controls").selectAll("button.linkButtons").data(gD3.linkAttributes()) | |
.enter() | |
.append("button") | |
.attr("class", "linkButtons") | |
.on("click", linkButtonClick) | |
.html(function(d) {return d}); | |
} | |
function nodeButtonClick(d,i) { | |
var nodeAttExtent = d3.extent(filteredNodes, function(p) {return parseFloat(p.properties[d])}); | |
var colorScale = d3.scale.quantize().domain(nodeAttExtent).range(colorbrewer.YlGnBu[6]); | |
d3.selectAll("circle").style("fill", function(p) {return colorScale(p.properties[d])}).style("opacity", 1) | |
} | |
function linkButtonClick(d,i) { | |
var linkAttExtent = d3.extent(filteredLinks, function(p) {return parseFloat(p.properties[d])}); | |
var colorScale = d3.scale.quantize().domain(linkAttExtent).range(colorbrewer.YlGnBu[6]); | |
d3.selectAll("line").style("stroke", function(p) {return colorScale(p.properties[d])}).style("opacity", 1) | |
} | |
function redrawGraph() { | |
var xScale = gD3.xScale(); | |
var yScale = gD3.yScale(); | |
d3.selectAll("line.link") | |
.attr("x1", function (d) {return xScale(d.source.x)}) | |
.attr("x2", function (d) {return xScale(d.target.x)}) | |
.attr("y1", function (d) {return yScale(d.source.y)}) | |
.attr("y2", function (d) {return yScale(d.target.y)}); | |
d3.selectAll("g.node") | |
.attr("transform", function(d) {return "translate(" + xScale(d.x) + "," + yScale(d.y) + ")"}); | |
} | |
function collapseNetwork(collapseVector) { | |
currentBrush = [0,0]; | |
dAtt = gD3.dynamicAttribute(); | |
if (collapseVector == "base") { | |
gD3.links(allLinks); | |
brushMove(); | |
return; | |
} | |
newLinks = []; | |
for (x in allLinks) { | |
if (allLinks[x].source.properties.type == collapseVector) { | |
for (y in allLinks) { | |
if (allLinks[y].source.properties.type == collapseVector) { | |
if (allLinks[y].target == allLinks[x].target && (allLinks[y].properties[dAtt] || allLinks[y].source.properties[dAtt]) == (allLinks[x].properties[dAtt] || allLinks[x].source.properties[dAtt])) { | |
var newLink = {id: collapseVector + newLinks.length, source: allLinks[x].source, target: allLinks[y].source, properties: {}}; | |
if (gD3.linkAttributes().indexOf(dAtt) > -1) { | |
newLink.properties[dAtt] = allLinks[x].properties[dAtt]; | |
} | |
else if (gD3.nodeAttributes().indexOf(dAtt) > -1) { | |
newLink.properties[dAtt] = allLinks[y].target.properties[dAtt]; | |
} | |
newLinks.push(newLink); | |
} | |
} | |
} | |
} | |
else if (allLinks[x].target.properties.type == collapseVector) { | |
for (y in allLinks) { | |
if (allLinks[y].target.properties.type == collapseVector) { | |
if (allLinks[y].source == allLinks[x].source && (allLinks[y].properties[dAtt] || allLinks[y].target.properties[dAtt]) == (allLinks[x].properties[dAtt] || allLinks[x].target.properties[dAtt])) { | |
var newLink = {id: collapseVector + newLinks.length, source: allLinks[x].target, target: allLinks[y].target, properties: {}}; | |
if (gD3.linkAttributes().indexOf(dAtt) > -1) { | |
newLink.properties[dAtt] = allLinks[x].properties[dAtt]; | |
} | |
else if (gD3.nodeAttributes().indexOf(dAtt) > -1) { | |
newLink.properties[dAtt] = allLinks[y].source.properties[dAtt]; | |
} | |
newLinks.push(newLink); | |
} | |
} | |
} | |
} | |
} | |
gD3.links(newLinks); | |
brushMove(); | |
} | |
function brushMove() { | |
var s = gD3.dynamicBrush().extent(); | |
var dAtt = gD3.dynamicAttribute(); | |
var xScale = gD3.xScale(); | |
var yScale = gD3.yScale(); | |
var sizeScale = gD3.nodeScale(); | |
if (Math.ceil(s[0]) == currentBrush[0] && Math.floor(s[1]) == currentBrush[1]) { | |
return; | |
} | |
else { | |
currentBrush[0] = Math.floor(s[0]); | |
currentBrush[1] = Math.ceil(s[1]); | |
} | |
var forceRunning = false; | |
if (force.alpha() > 0) { | |
force.stop(); | |
forceRunning = true; | |
} | |
if (typeof gD3.links()[0].properties["startyr"] != "undefined") { | |
filteredLinks = gD3.links().filter(function (d) {return d.properties[dAtt] == 0 || (d.properties[dAtt] >= currentBrush[0] && d.properties[dAtt] <= currentBrush[1])}); | |
sourceNodes = filteredLinks.map(function (el) {return el.source}); | |
targetNodes = filteredLinks.map(function (el) {return el.target}); | |
filteredNodes = gD3.nodes().filter(function (d) {return sourceNodes.indexOf(d) > -1 || targetNodes.indexOf(d) > -1}); | |
} | |
else { | |
filteredLinks = gD3.links(); | |
filteredNodes = gD3.nodes(); | |
} | |
if (gD3.nodeAttributes().indexOf(dAtt) > -1) { | |
filteredNodes = filteredNodes.filter(function (d) {return d.properties[dAtt] == 0 || (d.properties[dAtt] >= currentBrush[0] && d.properties[dAtt] <= currentBrush[1])}); | |
nodeIDs = filteredNodes.map(function (el) {return el.id}) | |
filteredLinks = filteredLinks.filter(function (d) {return nodeIDs.indexOf(d.source.id) > -1 && nodeIDs.indexOf(d.target.id) > -1}) | |
} | |
d3.select("#graphG").selectAll("line.link") | |
.data(filteredLinks, function (d) {return d.id}) | |
.enter() | |
.insert("line", "g.node") | |
.attr("class","link") | |
.attr("x1", function (d) {return xScale(d.source.x)}) | |
.attr("x2", function (d) {return xScale(d.target.x)}) | |
.attr("y1", function (d) {return yScale(d.source.y)}) | |
.attr("y2", function (d) {return yScale(d.target.y)}) | |
.style("stroke", "black") | |
.style("stroke-width", "1px") | |
.style("opacity", .25) | |
d3.select("#graphG").selectAll("g.node").data(filteredNodes, function (d) {return d.id}) | |
.enter() | |
.append("g") | |
.attr("class", "node") | |
.attr("transform", function(d) {return "translate(" + xScale(d.x) + "," + yScale(d.y) + ")"}) | |
.on("mouseover", nodeOver) | |
.on("mouseout", nodeOut) | |
.on("click", nodeClick) | |
.append("circle") | |
.attr("r", 5) | |
.style("fill", function(d) {return d.rgbColor}) | |
.style("stroke", "black") | |
.style("stroke-width", "1px") | |
.style("stroke-opacity", 1); | |
d3.selectAll("g.node").data(filteredNodes, function (d) {return d.id}) | |
.exit() | |
.remove(); | |
d3.selectAll("line.link").data(filteredLinks, function (d) {return d.id}) | |
.exit() | |
.remove(); | |
force | |
.nodes(filteredNodes) | |
.links(filteredLinks); | |
force.start(); | |
var maxWeight = d3.max(filteredNodes, function(d) {return d.weight || 0}); | |
if (maxWeight > 0) { | |
var nodeScale = d3.scale.linear().domain([1,maxWeight]).range([2,10]).clamp(true); | |
d3.selectAll("g.node").select("circle").attr("r", function(d) {return nodeScale(d.weight) || 0}); | |
} | |
if (!forceRunning) { | |
force.stop(); | |
} | |
function nodeOver(d,i,e) { | |
var el = this; | |
if (!d3.event.fromElement) { | |
el = e; | |
} | |
if (nodeFocus) { | |
return; | |
} | |
//Only do the element stuff if this came from mouseover | |
el.parentNode.appendChild(el); | |
d3.select(el).append("text").attr("class", "hoverLabel").attr("stroke", "white").attr("stroke-width", "5px") | |
.style("opacity", .9) | |
.style("pointer-events", "none") | |
.text(d.label); | |
d3.select(el).append("text").attr("class", "hoverLabel") | |
.style("pointer-events", "none") | |
.text(d.label); | |
highlightNeighbors(d,i); | |
} | |
function nodeClick(d,i) { | |
nodeFocus = false; | |
nodeOut(); | |
nodeOver(d,i,this); | |
nodeFocus = true; | |
var newContent = "<p>" + d.label + "</p>"; | |
newContent += "<p>Attributes: </p><p><ul>"; | |
for (x in gD3.nodeAttributes()) { | |
newContent += "<li>" + gD3.nodeAttributes()[x] + ": " + d.properties[gD3.nodeAttributes()[x]]+ "</li>"; | |
} | |
newContent += "</ul></p><p>Connections:</p><ul>"; | |
var neighbors = findNeighbors(d,i); | |
for (x in neighbors.nodes) { | |
if (neighbors.nodes[x] != d) { | |
newContent += "<li>" + neighbors.nodes[x].label + "</li>"; | |
} | |
} | |
newContent += "</ul></p>"; | |
d3.select("#modal").style("display", "block").select("#content").html(newContent); | |
} | |
} | |
function createAnonymousEdgeTable() { | |
var htmlTable = "source,target,year<br>"; | |
for (x in gD3.links()) { | |
htmlTable+=gD3.links()[x].source.properties.type + "-" + gD3.nodes().indexOf(gD3.links()[x].source) + "," + gD3.links()[x].target.properties.type + "-" + gD3.nodes().indexOf(gD3.links()[x].target) + "," + gD3.links()[x].properties.year; | |
htmlTable+="<br>"; | |
} | |
d3.select("#content").html(htmlTable) | |
} | |
function nodeOut() { | |
if (nodeFocus) { | |
return; | |
} | |
d3.selectAll(".hoverLabel").remove(); | |
d3.selectAll("circle").style("opacity", 1).style("stroke", "black").style("stroke-width", "1px"); | |
d3.selectAll("line").style("opacity", .25); | |
} | |
</script> | |
</footer> | |
</body> | |
</html> |
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;(function(undefined) { | |
'use strict'; | |
/** | |
* GEXF Parser | |
* ============ | |
* | |
* Author: PLIQUE Guillaume (Yomguithereal) | |
* URL: https://github.com/Yomguithereal/gexf-parser | |
* Version: 1.0 | |
*/ | |
/** | |
* Helper Namespace | |
* ----------------- | |
* | |
* A useful batch of function dealing with DOM operations and types. | |
*/ | |
var _helpers = { | |
nodeListToArray: function(nodeList) { | |
// Return array | |
var children = []; | |
// Iterating | |
for (var i = 0, len = nodeList.length; i < len; ++i) { | |
if (nodeList[i].nodeName !== '#text') | |
children.push(nodeList[i]); | |
} | |
return children; | |
}, | |
nodeListEach: function(nodeList, func) { | |
// Iterating | |
for (var i = 0, len = nodeList.length; i < len; ++i) { | |
if (nodeList[i].nodeName !== '#text') | |
func(nodeList[i]); | |
} | |
}, | |
nodeListToHash: function(nodeList, filter) { | |
// Return object | |
var children = {}; | |
// Iterating | |
for (var i = 0; i < nodeList.length; i++) { | |
if (nodeList[i].nodeName !== '#text') { | |
var prop = filter(nodeList[i]); | |
children[prop.key] = prop.value; | |
} | |
} | |
return children; | |
}, | |
namedNodeMapToObject: function(nodeMap) { | |
// Return object | |
var attributes = {}; | |
// Iterating | |
for (var i = 0; i < nodeMap.length; i++) { | |
attributes[nodeMap[i].name] = nodeMap[i].value; | |
} | |
return attributes; | |
}, | |
getFirstElementByTagNS: function(node, ns, tag) { | |
var el = node.getElementsByTagName(ns + ':' + tag)[0]; | |
if (!el) | |
el = node.getElementsByTagNameNS(ns, tag)[0]; | |
if (!el) | |
el = node.getElementsByTagName(tag)[0]; | |
return el; | |
}, | |
getAttributeNS: function(node, ns, attribute) { | |
var attr_value = node.getAttribute(ns + ':' + attribute); | |
if (attr_value === undefined) | |
attr_value = node.getAttributeNS(ns, attribute); | |
if (attr_value === undefined) | |
attr_value = node.getAttribute(attribute); | |
return attr_value; | |
}, | |
enforceType: function(type, value) { | |
switch (type) { | |
case 'boolean': | |
value = (value === 'true'); | |
break; | |
case 'integer': | |
case 'long': | |
case 'float': | |
case 'double': | |
value = +value; | |
break; | |
} | |
return value; | |
}, | |
getRGB: function(values) { | |
return (values[3]) ? | |
'rgba(' + values.join(',') + ')' : | |
'rgb(' + values.slice(0, -1).join(',') + ')'; | |
} | |
}; | |
/** | |
* Parser Core Functions | |
* ---------------------- | |
* | |
* The XML parser's functions themselves. | |
*/ | |
/** | |
* Node structure. | |
* A function returning an object guarded with default value. | |
* | |
* @param {object} properties The node properties. | |
* @return {object} The guarded node object. | |
*/ | |
function Node(properties) { | |
// Possible Properties | |
return { | |
id: properties.id, | |
label: properties.label, | |
attributes: properties.attributes || {}, | |
viz: properties.viz || {} | |
}; | |
} | |
/** | |
* Edge structure. | |
* A function returning an object guarded with default value. | |
* | |
* @param {object} properties The edge properties. | |
* @return {object} The guarded edge object. | |
*/ | |
function Edge(properties) { | |
// Possible Properties | |
return { | |
id: properties.id, | |
type: properties.type || 'undirected', | |
label: properties.label || '', | |
source: properties.source, | |
target: properties.target, | |
weight: +properties.weight || 1.0, | |
viz: properties.viz || {} | |
}; | |
} | |
/** | |
* Graph parser. | |
* This structure parse a gexf string and return an object containing the | |
* parsed graph. | |
* | |
* @param {string} xml The xml string of the gexf file to parse. | |
* @return {object} The parsed graph. | |
*/ | |
function Graph(xml) { | |
var _xml = {}; | |
// Basic Properties | |
//------------------ | |
_xml.els = { | |
root: xml.getElementsByTagName('gexf')[0], | |
graph: xml.getElementsByTagName('graph')[0], | |
meta: xml.getElementsByTagName('meta')[0], | |
model: xml.getElementsByTagName('attribute'), | |
nodes: xml.getElementsByTagName('node'), | |
edges: xml.getElementsByTagName('edge') | |
}; | |
_xml.hasViz = !!_helpers.getAttributeNS(_xml.els.root, 'xmlns', 'viz'); | |
_xml.version = _xml.els.root.getAttribute('version') || '1.0'; | |
_xml.mode = _xml.els.graph.getAttribute('mode') || 'static'; | |
var edgeType = _xml.els.graph.getAttribute('defaultedgetype'); | |
_xml.defaultEdgetype = edgeType || 'undirected'; | |
// Parser Functions | |
//------------------ | |
// Meta Data | |
function _metaData() { | |
var metas = {}; | |
if (!_xml.els.meta) | |
return metas; | |
// Last modified date | |
metas.lastmodifieddate = _xml.els.meta.getAttribute('lastmodifieddate'); | |
// Other information | |
_helpers.nodeListEach(_xml.els.meta.childNodes, function(child) { | |
metas[child.tagName.toLowerCase()] = child.textContent; | |
}); | |
return metas; | |
} | |
// Model | |
function _model() { | |
var attributes = []; | |
// Iterating through attributes | |
_helpers.nodeListEach(_xml.els.model, function(attr) { | |
// Properties | |
var properties = { | |
id: attr.getAttribute('id') || attr.getAttribute('for'), | |
type: attr.getAttribute('type') || 'string', | |
title: attr.getAttribute('title') || '' | |
}; | |
// Defaults | |
var default_el = _helpers.nodeListToArray(attr.childNodes); | |
if (default_el.length > 0) | |
properties.defaultValue = default_el[0].textContent; | |
// Creating attribute | |
attributes.push(properties); | |
}); | |
return attributes; | |
} | |
// Nodes | |
function _nodes(model) { | |
var nodes = []; | |
// Iteration through nodes | |
_helpers.nodeListEach(_xml.els.nodes, function(n) { | |
// Basic properties | |
var properties = { | |
id: n.getAttribute('id'), | |
label: n.getAttribute('label') || '' | |
}; | |
// Retrieving data from nodes if any | |
if (model.length > 0) | |
properties.attributes = _nodeData(model, n); | |
// Retrieving viz information | |
if (_xml.hasViz) | |
properties.viz = _nodeViz(n); | |
// Pushing node | |
nodes.push(Node(properties)); | |
}); | |
return nodes; | |
} | |
// Data from nodes | |
function _nodeData(model, node) { | |
var data = {}; | |
var attvalues_els = node.getElementsByTagName('attvalue'); | |
// Getting Node Indicated Attributes | |
var ah = _helpers.nodeListToHash(attvalues_els, function(el) { | |
var attributes = _helpers.namedNodeMapToObject(el.attributes); | |
var key = attributes.id || attributes['for']; | |
// Returning object | |
return {key: key, value: attributes.value}; | |
}); | |
// Iterating through model | |
model.map(function(a) { | |
// Default value? | |
var att_title = a.title.toLowerCase(); | |
data[att_title] = !(a.id in ah) && 'defaultValue' in a ? | |
_helpers.enforceType(a.type, a.defaultValue) : | |
_helpers.enforceType(a.type, ah[a.id]); | |
}); | |
return data; | |
} | |
// Viz information from nodes | |
function _nodeViz(node) { | |
var viz = {}; | |
// Color | |
var color_el = _helpers.getFirstElementByTagNS(node, 'viz', 'color'); | |
if (color_el) { | |
var color = ['r', 'g', 'b', 'a'].map(function(c) { | |
return color_el.getAttribute(c); | |
}); | |
viz.color = _helpers.getRGB(color); | |
} | |
// Position | |
var pos_el = _helpers.getFirstElementByTagNS(node, 'viz', 'position'); | |
if (pos_el) { | |
viz.position = {}; | |
['x', 'y', 'z'].map(function(p) { | |
viz.position[p] = +pos_el.getAttribute(p); | |
}); | |
} | |
// Size | |
var size_el = _helpers.getFirstElementByTagNS(node, 'viz', 'size'); | |
if (size_el) | |
viz.size = +size_el.getAttribute('value'); | |
// Shape | |
var shape_el = _helpers.getFirstElementByTagNS(node, 'viz', 'shape'); | |
if (shape_el) | |
viz.shape = shape_el.getAttribute('value'); | |
return viz; | |
} | |
// Edges | |
function _edges(default_type) { | |
var edges = []; | |
// Iteration through edges | |
_helpers.nodeListEach(_xml.els.edges, function(e) { | |
// Creating the edge | |
var properties = _helpers.namedNodeMapToObject(e.attributes); | |
if (!('type' in properties)) { | |
properties.type = default_type; | |
} | |
// Retrieving viz information | |
if (_xml.hasViz) | |
properties.viz = _edgeViz(e); | |
edges.push(Edge(properties)); | |
}); | |
return edges; | |
} | |
// Viz information from edges | |
function _edgeViz(edge) { | |
var viz = {}; | |
// Color | |
var color_el = _helpers.getFirstElementByTagNS(edge, 'viz', 'color'); | |
if (color_el) { | |
var color = ['r', 'g', 'b', 'a'].map(function(c) { | |
return color_el.getAttribute(c); | |
}); | |
viz.color = _helpers.getRGB(color); | |
} | |
// Shape | |
var shape_el = _helpers.getFirstElementByTagNS(edge, 'viz', 'shape'); | |
if (shape_el) | |
viz.shape = shape_el.getAttribute('value'); | |
// Thickness | |
var thick_el = _helpers.getFirstElementByTagNS(edge, 'viz', 'thickness'); | |
if (thick_el) | |
viz.thickness = +thick_el.getAttribute('value'); | |
return viz; | |
} | |
// Returning the Graph | |
//--------------------- | |
_xml.model = _model(); | |
return { | |
version: _xml.version, | |
mode: _xml.mode, | |
defaultEdgeType: _xml.defaultEdgetype, | |
meta: _metaData(), | |
model: _xml.model, | |
nodes: _nodes(_xml.model), | |
edges: _edges(_xml.defaultEdgetype) | |
}; | |
} | |
/** | |
* Public API | |
* ----------- | |
* | |
* User-accessible functions. | |
*/ | |
// Fetching GEXF with XHR | |
function fetch(gexf_url, callback) { | |
var xhr = (function() { | |
if (window.XMLHttpRequest) | |
return new XMLHttpRequest(); | |
var names, | |
i; | |
if (window.ActiveXObject) { | |
names = [ | |
'Msxml2.XMLHTTP.6.0', | |
'Msxml2.XMLHTTP.3.0', | |
'Msxml2.XMLHTTP', | |
'Microsoft.XMLHTTP' | |
]; | |
for (i in names) | |
try { | |
return new ActiveXObject(names[i]); | |
} catch (e) {} | |
} | |
return null; | |
})(); | |
if (!xhr) | |
throw 'XMLHttpRequest not supported, cannot load the file.'; | |
// Async? | |
var async = (typeof callback === 'function'), | |
getResult; | |
// If we can't override MIME type, we are on IE 9 | |
// We'll be parsing the response string then. | |
if (xhr.overrideMimeType) { | |
xhr.overrideMimeType('text/xml'); | |
getResult = function(r) { | |
return r.responseXML; | |
}; | |
} | |
else { | |
getResult = function(r) { | |
var p = new DOMParser(); | |
return p.parseFromString(r.responseText, 'application/xml'); | |
}; | |
} | |
xhr.open('GET', gexf_url, async); | |
if (async) | |
xhr.onreadystatechange = function() { | |
if (xhr.readyState === 4) | |
callback(getResult(xhr)); | |
}; | |
xhr.send(); | |
return (async) ? xhr : getResult(xhr); | |
} | |
// Parsing the GEXF File | |
function parse(gexf) { | |
return Graph(gexf); | |
} | |
// Fetch and parse the GEXF File | |
function fetchAndParse(gexf_url, callback) { | |
if (typeof callback === 'function') { | |
return fetch(gexf_url, function(gexf) { | |
callback(Graph(gexf)); | |
}); | |
} else | |
return Graph(fetch(gexf_url)); | |
} | |
/** | |
* Exporting | |
* ---------- | |
*/ | |
this.GexfParser = { | |
// Functions | |
parse: parse, | |
fetch: fetchAndParse, | |
// Version | |
version: '0.1' | |
}; | |
}).call(this); |
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