Last active
February 23, 2023 14:47
-
-
Save ritchie46/3c4825cd28c867cc028626b920677497 to your computer and use it in GitHub Desktop.
Example of polars multithreading third party work pool
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
import polars as pl | |
import numpy as np | |
df = (pl.DataFrame({ | |
"a": np.random.randint(0, 100, int(1e8)) | |
}).groupby("a").agg( | |
pl.col("a").alias("list") | |
)) | |
# prints | |
# shape: (100, 2) | |
# ┌─────┬──────────────────┐ | |
# │ a ┆ list │ | |
# │ --- ┆ --- │ | |
# │ i64 ┆ list[i64] │ | |
# ╞═════╪══════════════════╡ | |
# │ 16 ┆ [16, 16, ... 16] │ | |
# │ 32 ┆ [32, 32, ... 32] │ | |
# │ 64 ┆ [64, 64, ... 64] │ | |
# │ 96 ┆ [96, 96, ... 96] │ | |
# │ ... ┆ ... │ | |
# │ 65 ┆ [65, 65, ... 65] │ | |
# │ 97 ┆ [97, 97, ... 97] │ | |
# │ 33 ┆ [33, 33, ... 33] │ | |
# │ 1 ┆ [1, 1, ... 1] │ | |
# └─────┴──────────────────┘ | |
# an expensive numpy operation that releases the GIL | |
def third_party(s: pl.Series) -> int: | |
return np.sum(np.cumsum(s.to_numpy())) * np.sum(np.cunsum(np.ones(int(1e7)))) | |
# A function that takes in a DataFrame | |
# converts it to a LazyFrame and uses `apply` | |
# to run a python loop | |
def my_computation(df: pl.DataFrame) -> pl.LazyFrame: | |
return df.lazy().select( | |
pl.col("list").apply(third_party) | |
) | |
# 8 threads | |
# partition the work to run on 8 threads | |
n_threads = 8 | |
chunk_size = df.height // n_threads | |
# create partitions with LazyFrames | |
# this are promises on a computation | |
partitions = [my_computation(df[i * chunk_size: i * chunk_size + chunk_size]) for i in range(n_threads)] | |
# Collect all LazyFrames in parallel. | |
pl.collect_all(partitions) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment