Deploying Clowder using Docker

.env

# This file will override the configation options in the docker-compose
# file. Copy this file to the same folder as docker-compose as .env

# ----------------------------------------------------------------------
# GENERAL CONFIGURATION
# ----------------------------------------------------------------------

# project name (-p flag for docker-compose)
#COMPOSE_PROJECT_NAME=dev

# ----------------------------------------------------------------------
# TRAEFIK CONFIGURATION
# ----------------------------------------------------------------------

# hostname of server
TRAEFIK_HOST=Host:clowder-docker.ncsa.illinois.edu;

# only allow access from localhost and NCSA
#TRAEFIK_IPFILTER=172.16.0.0/12, 141.142.0.0/16

# Run traffik on port 80 (http) and port 443 (https)
TRAEFIK_HTTP_PORT=80
TRAEFIK_HTTPS_PORT=443
TRAEFIK_HTTPS_OPTIONS=TLS

# enable SSL cerificate generation
TRAEFIK_ACME_ENABLE=true

# Use you real email address here to be notified if cert expires
[email protected]

# Always use https, trafic to http is redirected to https
TRAEFIK_HTTP_REDIRECT=Redirect.EntryPoint:https

# ----------------------------------------------------------------------
# CLOWDER CONFIGURATION
# ----------------------------------------------------------------------

# what version of clowder to use
CLOWDER_VERSION=develop

# path for clowder
#CLOWDER_CONTEXT=/clowder/

# list of initial admins
#[email protected]

# require approval of the clowder admins before user can login
#CLOWDER_REGISTER=true

# secret used to encrypt cookies for example
CLOWDER_SECRET=this_is_something_you_should_change

# admin key to clowder
CLOWDER_KEY=super_secret

# use SSL for login pages (set this if you enable ACME)
CLOWDER_SSL=true

# should clowder send email (false means send email using smtp server)
SMTP_MOCK=false

# name of the smtp server that will handle the emails from clowder
SMTP_SERVER=smtp

# ----------------------------------------------------------------------
# RABBITMQ CONFIGURATION
# ----------------------------------------------------------------------

# RabbitMQ username and password
#RABBITMQ_DEFAULT_USER=clowder
#RABBITMQ_DEFAULT_PASS=cats

# create the correct URI with above username and password
#RABBITMQ_URI=amqp://clowder:cats@rabbitmq/%2F

# exchange to be used
#RABBITMQ_EXCHANGE=clowder

# in case of external rabbitmq, the url to clowder
#RABBITMQ_CLOWDERURL=https://clowder-docker.ncsa.illinois.edu/

README.md

This will get clowder up and running. This assumes you have docker and docker-compose installed

Grab the 4 files from below, and modify as required

• docker-compose.yml : the main docker setup file (same as in develop branch as of writing)
• docker-compose.override.yml : changes to the docker-compose file, for example where to write the data
• docker-compose.extractors.yml : list of extractors you want to start with clowder
• .env : any environment variables changed that are used in the docker-compose files

Once you have the containers created, make the folder:

mkdir -p /home/clowder/clowder/{custom,data,elasticsearch,mongo,rabbitmq,traefik}

Start clowder:

docker-compose -f docker-compose.yml -f docker-compose.override.yml -f docker-compose.extractors.yml up -d

Wait and connect to the server: https://clowder-docker.ncsa.illinois.edu

docker-compose.extractors.yaml

version: '3.5'

# to use the extractors start with
# docker-compose -f docker-compose.yml -f docker-compose.override.yml -f docker-compose.extractors.yml up -d

services:
  # ----------------------------------------------------------------------
  # EXTRACTORS
  # ----------------------------------------------------------------------

  # extract checksum
  filedigest:
    image: clowder/extractors-digest:latest
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - rabbitmq
      - clowder
    environment:
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}

  # extract preview image
  imagepreview:
    image: clowder/extractors-image-preview:latest
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - rabbitmq
      - clowder
    environment:
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}

  # extract image metadata
  imagemetadata:
    image: clowder/extractors-image-metadata:latest
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - rabbitmq
      - clowder
    environment:
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}

  # extract preview image from audio spectrogram
  audiopreview:
    image: clowder/extractors-audio-preview:${CLOWDER_VERSION:-latest}
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - rabbitmq
      - clowder
    environment:
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}

  # extract pdf preview image
  pdfpreview:
    image: clowder/extractors-pdf-preview:${CLOWDER_VERSION:-latest}
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - rabbitmq
      - clowder
    environment:
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}

  # extract video preview image as well as smaller video
  videopreview:
    image: clowder/extractors-video-preview:${CLOWDER_VERSION:-latest}
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - rabbitmq
      - clowder
    environment:
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}

docker-compose.override.yml

version: "3.5"

volumes:
  traefik:
    driver_opts:
      type: none
      o: bind
      device: /home/kooper/clowder/traefik
  clowder-data:
    driver_opts:
      type: none
      o: bind
      device: /home/kooper/clowder/data
  clowder-custom:
    driver_opts:
      type: none
      o: bind
      device: /home/kooper/clowder/custom
  mongo:
    driver_opts:
      type: none
      o: bind
      device: /home/kooper/clowder/mongo
  rabbitmq:
    driver_opts:
      type: none
      o: bind
      device: /home/kooper/clowder/rabbitmq
  elasticsearch:
    driver_opts:
      type: none
      o: bind
      device: /home/kooper/clowder/elasticsearch

docker-compose.yml

version: '3.5'

services:
  # ----------------------------------------------------------------------
  # SINGLE ENTRYPOINT
  # ----------------------------------------------------------------------
  # webserver to handle all traffic. This can use let's encrypt to generate a SSL cert.
  traefik:
    image: traefik:1.7
    command:
      - --loglevel=INFO
      - --api
      # Entrypoints
      - --defaultentrypoints=https,http
      - --entryPoints=Name:http Address::80 ${TRAEFIK_HTTP_REDIRECT:-""}
      - --entryPoints=Name:https Address::443 ${TRAEFIK_HTTPS_OPTIONS:-TLS}
      # Configuration for acme (https://letsencrypt.org/)
      - --acme=${TRAEFIK_ACME_ENABLE:-false}
      #- --acme.caserver=https://acme-staging-v02.api.letsencrypt.org/directory
      - --acme.email=${TRAEFIK_ACME_EMAIL:-""}
      - --acme.entrypoint=https
      - --acme.onhostrule=true
      - --acme.storage=/config/acme.json
      - --acme.httpchallenge.entrypoint=http
      - --acme.storage=/config/acme.json
      - --acme.acmelogging=true
      # DOCKER
      - --docker=true
      - --docker.endpoint=unix:///var/run/docker.sock
      - --docker.exposedbydefault=false
      - --docker.watch=true
    restart: unless-stopped
    networks:
      - clowder
    ports:
      - "${TRAEFIK_HTTP_PORT-8000}:80"
      - "${TRAEFIK_HTTPS_PORT-8443}:443"
    labels:
      - "traefik.enable=true"
      - "traefik.backend=traefik"
      - "traefik.port=8080"
      - "traefik.frontend.rule=${TRAEFIK_HOST:-}PathPrefixStrip: /traefik"
      - "traefik.website.frontend.whiteList.sourceRange=${TRAEFIK_IPFILTER:-172.16.0.0/12}"
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock:ro
      - traefik:/config

  # ----------------------------------------------------------------------
  # CLOWDER APPLICATION
  # ----------------------------------------------------------------------

  # main clowder application
  clowder:
    image: clowder/clowder:${CLOWDER_VERSION:-latest}
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - mongo
    environment:
      - CLOWDER_ADMINS=${CLOWDER_ADMINS:[email protected]}
      - CLOWDER_REGISTER=${CLOWDER_REGISTER:-false}
      - CLOWDER_CONTEXT=${CLOWDER_CONTEXT:-/}
      - CLOWDER_SSL=${CLOWDER_SSL:-false}
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}
      - RABBITMQ_EXCHANGE=${RABBITMQ_EXCHANGE:-clowder}
      - RABBITMQ_CLOWDERURL=${RABBITMQ_CLOWDERURL:-http://clowder:9000}
      - SMTP_MOCK=${SMTP_MOCK:-true}
      - SMTP_SERVER=${SMTP_SERVER:-smtp}
    labels:
      - "traefik.enable=true"
      - "traefik.backend=clowder"
      - "traefik.port=9000"
      - "traefik.frontend.rule=${TRAEFIK_HOST:-}PathPrefix: ${CLOWDER_CONTEXT:-/}"
    volumes:
      - clowder-custom:/home/clowder/custom
      - clowder-data:/home/clowder/data

  # ----------------------------------------------------------------------
  # CLOWDER DEPENDENCIES
  # ----------------------------------------------------------------------

  # database to hold metadata (required)
  mongo:
    image: mongo:3.4
    restart: unless-stopped
    networks:
      - clowder
    volumes:
      - mongo:/data/db

  # message broker (optional but needed for extractors)
  rabbitmq:
    image: rabbitmq:management-alpine
    restart: unless-stopped
    networks:
      - clowder
    environment:
      - RABBITMQ_SERVER_ADDITIONAL_ERL_ARGS=-rabbitmq_management path_prefix "/rabbitmq"
      - RABBITMQ_DEFAULT_USER=${RABBITMQ_DEFAULT_USER:-guest}
      - RABBITMQ_DEFAULT_PASS=${RABBITMQ_DEFAULT_PASS:-guest}
    labels:
      - "traefik.enable=true"
      - "traefik.backend=rabbitmq"
      - "traefik.port=15672"
      - "traefik.frontend.rule=${TRAEFIK_HOST:-}PathPrefix: /rabbitmq"
      - "traefik.website.frontend.whiteList.sourceRange=${TRAEFIK_IPFILTER:-172.16.0.0/12}"
    volumes:
      - rabbitmq:/var/lib/rabbitmq

  # search index (optional, needed for search and sorting future) 
  elasticsearch:
    image: elasticsearch:2
    command: elasticsearch -Des.cluster.name="clowder"
    networks:
      - clowder
    restart: unless-stopped
    environment:
      - cluster.name=clowder
    volumes:
      - elasticsearch:/usr/share/elasticsearch/data

  # monitor clowder extractors
  monitor:
    image: clowder/extractors-monitor:${CLOWDER_VERSION:-latest}
    restart: unless-stopped
    networks:
      - clowder
    depends_on:
      - rabbitmq
    environment:
      - RABBITMQ_URI=${RABBITMQ_URI:-amqp://guest:guest@rabbitmq/%2F}
      - RABBITMQ_MGMT_PORT=15672
      - RABBITMQ_MGMT_PATH=/rabbitmq
    labels:
      - "traefik.enable=true"
      - "traefik.backend=monitor"
      - "traefik.port=9999"
      - "traefik.frontend.rule=${TRAEFIK_FRONTEND_RULE:-}PathPrefixStrip:/monitor"

# ----------------------------------------------------------------------
# NETWORK FOR CONTAINER COMMUNICATION
# ----------------------------------------------------------------------
networks:
  clowder:

# ----------------------------------------------------------------------
# VOLUMES FOR PERSISTENT STORAGE
# ----------------------------------------------------------------------
volumes:
  traefik:
  clowder-data:
  clowder-custom:
  mongo:
  rabbitmq:
  elasticsearch: