Jiho Noh romanegloo

[title]

project description

list of required packages or softwares, versions of systems

(Note. If you missed the "Python Primer" lab and you have no Python experience, please come to Jiho's office hours. We can do this together.)

Fibonacci numbers are defined recursively as below:

f(0) = 0, f(1) = 1
f(n) = f(n-1) + f(n-2)

Implement a fibonacci function fib(n), and use it to print out the Fibonacci numbers where n ranges from 0 to 9 such as:

instruction note (lab8)

struct type_name {
 int var1, var2;

Easiest so far!!!

	""" UTS (UMLS Terminology Services) API client """
	import json
	from pathlib import Path
	import requests
	from lxml.html import fromstring


	class UtsClient:
	"""All the UTS REST API requests are handled through this client"""
	def __init__(self, apikey=None):

	#!/usr/bin/env python3
	# pylint: disable=invalid-name
	"""Reads UMNSRS datasets where CUIs are used, add corresponding MeSHes to the
	CUIs"""

	from pathlib import Path
	import csv
	from tqdm import tqdm
	from BMET.uts_api_client import UtsClient

	#!/usr/bin/env python3
	"""
	Parse PubTator raw data file, and creates ElasticSearch index, and populate the
	corpus (index: 'pubtator')

	You can download PubTator dataset from the following link:
	ftp://ftp.ncbi.nlm.nih.gov/pub/lu/PubTator/bioconcepts2pubtator_offsets.gz
	Place the file in 'data/' and run this code. Don't need to decompress the file.

	We assume that ElasticSearch is properly installed and accessible via its API

	#!/usr/bin/env python3
	"""Preprocess PubTator corpus and ScopeNotes of MeSH descriptors for language
	model training (LmBMET).

	1) Given the original PubTator biocepts annotated documents, this interpolates
	the concept codes into document texts. Before that, this will count word
	frequencies and generate vocabulary which will include the entire set of
	bioconcepts (MeSH in particular). In case that a pre-trained embeddings file
	(.vec) is provided, we obtain a vocabulary from the embeddings.

	import csv
	import sqlite3

	eval_file = "data/eval/MayoSRS_mesh.csv"
	db_file = "data/pubtator/pubtator-20190725-6496be10.db"

	words = []
	with open(eval_file) as f:
	csv_reader = csv.DictReader(f)
	for row in csv_reader: