Created
August 21, 2015 21:32
-
-
Save rossmounce/c6d19d5a73d00bee8b41 to your computer and use it in GitHub Desktop.
mvn clean install (of latest code from pmr github)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Apache Maven 3.0.5 | |
Maven home: /usr/share/maven | |
Java version: 1.7.0_79, vendor: Oracle Corporation | |
Java home: /usr/lib/jvm/java-7-openjdk-amd64/jre | |
Default locale: en_GB, platform encoding: UTF-8 | |
OS name: "linux", version: "3.19.0-26-generic", arch: "amd64", family: "unix" | |
[INFO] Error stacktraces are turned on. | |
[DEBUG] Reading global settings from /usr/share/maven/conf/settings.xml | |
[DEBUG] Reading user settings from /home/ross/.m2/settings.xml | |
[DEBUG] Using local repository at /home/ross/.m2/repository | |
[DEBUG] Using manager EnhancedLocalRepositoryManager with priority 10 for /home/ross/.m2/repository | |
[INFO] Scanning for projects... | |
[DEBUG] Extension realms for project org.xml-cml:ami2:jar:0.1-SNAPSHOT: (none) | |
[DEBUG] Looking up lifecyle mappings for packaging jar from ClassRealm[plexus.core, parent: null] | |
[WARNING] | |
[WARNING] Some problems were encountered while building the effective model for org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
[WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-surefire-plugin is missing. @ line 228, column 12 | |
[WARNING] | |
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. | |
[WARNING] | |
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects. | |
[WARNING] | |
[DEBUG] === REACTOR BUILD PLAN ================================================ | |
[DEBUG] Project: org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
[DEBUG] Tasks: [clean, install] | |
[DEBUG] Style: Regular | |
[DEBUG] ======================================================================= | |
[INFO] | |
[INFO] ------------------------------------------------------------------------ | |
[INFO] Building AMI 0.1-SNAPSHOT | |
[INFO] ------------------------------------------------------------------------ | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy] | |
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean] | |
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy] | |
[DEBUG] === PROJECT BUILD PLAN ================================================ | |
[DEBUG] Project: org.xml-cml:ami2:0.1-SNAPSHOT | |
[DEBUG] Dependencies (collect): [] | |
[DEBUG] Dependencies (resolve): [compile, runtime, test] | |
[DEBUG] Repositories (dependencies): [ebi-repo (http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo/, releases), ebi-repo-snapshots (http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/, snapshots), ebi-repo-3rd (http://www.ebi.ac.uk/~maven/m2repo, releases+snapshots), ucc-repo (https://maven.ch.cam.ac.uk/m2repo, releases+snapshots), central (https://repo.maven.apache.org/maven2, releases)] | |
[DEBUG] Repositories (plugins) : [central (https://repo.maven.apache.org/maven2, releases)] | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-clean-plugin:2.5:clean (default-clean) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<directory default-value="${project.build.directory}"/> | |
<excludeDefaultDirectories default-value="false">${clean.excludeDefaultDirectories}</excludeDefaultDirectories> | |
<failOnError default-value="true">${maven.clean.failOnError}</failOnError> | |
<followSymLinks default-value="false">${clean.followSymLinks}</followSymLinks> | |
<outputDirectory default-value="${project.build.outputDirectory}"/> | |
<reportDirectory default-value="${project.reporting.outputDirectory}"/> | |
<retryOnError default-value="true">${maven.clean.retryOnError}</retryOnError> | |
<skip default-value="false">${clean.skip}</skip> | |
<testOutputDirectory default-value="${project.build.testOutputDirectory}"/> | |
<verbose>${clean.verbose}</verbose> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:2.3:resources (default-resources) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
<escapeString>${maven.resources.escapeString}</escapeString> | |
<filters>${project.build.filters}</filters> | |
<includeEmptyDirs default-value="false">${maven.resources.includeEmptyDirs}</includeEmptyDirs> | |
<outputDirectory>${project.build.outputDirectory}</outputDirectory> | |
<overwrite default-value="false">${maven.resources.overwrite}</overwrite> | |
<project>${project}</project> | |
<resources>${project.resources}</resources> | |
<session>${session}</session> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<basedir default-value="${basedir}"/> | |
<buildDirectory default-value="${project.build.directory}"/> | |
<classpathElements default-value="${project.compileClasspathElements}"/> | |
<compileSourceRoots default-value="${project.compileSourceRoots}"/> | |
<compilerId default-value="javac">${maven.compiler.compilerId}</compilerId> | |
<compilerReuseStrategy default-value="${reuseCreated}">${maven.compiler.compilerReuseStrategy}</compilerReuseStrategy> | |
<compilerVersion>${maven.compiler.compilerVersion}</compilerVersion> | |
<debug default-value="true">${maven.compiler.debug}</debug> | |
<debuglevel>${maven.compiler.debuglevel}</debuglevel> | |
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
<executable>${maven.compiler.executable}</executable> | |
<failOnError default-value="true">${maven.compiler.failOnError}</failOnError> | |
<fork default-value="false">${maven.compiler.fork}</fork> | |
<generatedSourcesDirectory default-value="${project.build.directory}/generated-sources/annotations"/> | |
<maxmem>${maven.compiler.maxmem}</maxmem> | |
<meminitial>${maven.compiler.meminitial}</meminitial> | |
<optimize default-value="false">${maven.compiler.optimize}</optimize> | |
<outputDirectory default-value="${project.build.outputDirectory}"/> | |
<outputFileName>${project.build.finalName}</outputFileName> | |
<projectArtifact default-value="${project.artifact}"/> | |
<session default-value="${session}"/> | |
<showDeprecation default-value="false">${maven.compiler.showDeprecation}</showDeprecation> | |
<showWarnings default-value="false">${maven.compiler.showWarnings}</showWarnings> | |
<skipMultiThreadWarning default-value="${false}">${maven.compiler.skipMultiThreadWarning}</skipMultiThreadWarning> | |
<source default-value="1.5">${maven.compiler.source}</source> | |
<staleMillis default-value="0">${lastModGranularityMs}</staleMillis> | |
<target default-value="1.5">${maven.compiler.target}</target> | |
<verbose default-value="false">${maven.compiler.verbose}</verbose> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-resources-plugin:2.3:testResources (default-testResources) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
<escapeString>${maven.resources.escapeString}</escapeString> | |
<filters>${project.build.filters}</filters> | |
<includeEmptyDirs default-value="false">${maven.resources.includeEmptyDirs}</includeEmptyDirs> | |
<outputDirectory>${project.build.testOutputDirectory}</outputDirectory> | |
<overwrite default-value="false">${maven.resources.overwrite}</overwrite> | |
<project>${project}</project> | |
<resources>${project.testResources}</resources> | |
<session>${session}</session> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-compiler-plugin:2.5.1:testCompile (default-testCompile) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<basedir default-value="${basedir}"/> | |
<buildDirectory default-value="${project.build.directory}"/> | |
<classpathElements default-value="${project.testClasspathElements}"/> | |
<compileSourceRoots default-value="${project.testCompileSourceRoots}"/> | |
<compilerId default-value="javac">${maven.compiler.compilerId}</compilerId> | |
<compilerReuseStrategy default-value="${reuseCreated}">${maven.compiler.compilerReuseStrategy}</compilerReuseStrategy> | |
<compilerVersion>${maven.compiler.compilerVersion}</compilerVersion> | |
<debug default-value="true">${maven.compiler.debug}</debug> | |
<debuglevel>${maven.compiler.debuglevel}</debuglevel> | |
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
<executable>${maven.compiler.executable}</executable> | |
<failOnError default-value="true">${maven.compiler.failOnError}</failOnError> | |
<fork default-value="false">${maven.compiler.fork}</fork> | |
<generatedTestSourcesDirectory default-value="${project.build.directory}/generated-test-sources/test-annotations"/> | |
<maxmem>${maven.compiler.maxmem}</maxmem> | |
<meminitial>${maven.compiler.meminitial}</meminitial> | |
<optimize default-value="false">${maven.compiler.optimize}</optimize> | |
<outputDirectory default-value="${project.build.testOutputDirectory}"/> | |
<outputFileName>${project.build.finalName}</outputFileName> | |
<session default-value="${session}"/> | |
<showDeprecation default-value="false">${maven.compiler.showDeprecation}</showDeprecation> | |
<showWarnings default-value="false">${maven.compiler.showWarnings}</showWarnings> | |
<skip>${maven.test.skip}</skip> | |
<skipMultiThreadWarning default-value="${false}">${maven.compiler.skipMultiThreadWarning}</skipMultiThreadWarning> | |
<source default-value="1.5">${maven.compiler.source}</source> | |
<staleMillis default-value="0">${lastModGranularityMs}</staleMillis> | |
<target default-value="1.5">${maven.compiler.target}</target> | |
<testSource>${maven.compiler.testSource}</testSource> | |
<testTarget>${maven.compiler.testTarget}</testTarget> | |
<verbose default-value="false">${maven.compiler.verbose}</verbose> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-surefire-plugin:2.10:test (default-test) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<argLine>${argLine}</argLine> | |
<basedir default-value="${basedir}"/> | |
<childDelegation default-value="false">${childDelegation}</childDelegation> | |
<classesDirectory default-value="${project.build.outputDirectory}"/> | |
<debugForkedProcess>${maven.surefire.debug}</debugForkedProcess> | |
<disableXmlReport default-value="false">${disableXmlReport}</disableXmlReport> | |
<enableAssertions default-value="true">${enableAssertions}</enableAssertions> | |
<excludedGroups>${excludedGroups}</excludedGroups> | |
<failIfNoTests>${failIfNoTests}</failIfNoTests> | |
<forkMode default-value="once">${forkMode}</forkMode> | |
<forkedProcessTimeoutInSeconds>${surefire.timeout}</forkedProcessTimeoutInSeconds> | |
<groups>${groups}</groups> | |
<junitArtifactName default-value="junit:junit">${junitArtifactName}</junitArtifactName> | |
<jvm>${jvm}</jvm> | |
<localRepository>${localRepository}</localRepository> | |
<objectFactory>${objectFactory}</objectFactory> | |
<parallel>${parallel}</parallel> | |
<parallelMavenExecution default-value="${session.parallel}"/> | |
<perCoreThreadCount default-value="true">${perCoreThreadCount}</perCoreThreadCount> | |
<pluginArtifactMap>${plugin.artifactMap}</pluginArtifactMap> | |
<printSummary default-value="true">${surefire.printSummary}</printSummary> | |
<project default-value="${project}"/> | |
<projectArtifactMap>${project.artifactMap}</projectArtifactMap> | |
<redirectTestOutputToFile default-value="false">${maven.test.redirectTestOutputToFile}</redirectTestOutputToFile> | |
<remoteRepositories>${project.pluginArtifactRepositories}</remoteRepositories> | |
<reportFormat default-value="brief">${surefire.reportFormat}</reportFormat> | |
<reportNameSuffix default-value="">${surefire.reportNameSuffix}</reportNameSuffix> | |
<reportsDirectory default-value="${project.build.directory}/surefire-reports"/> | |
<runOrder default-value="filesystem"/> | |
<session>${session}</session> | |
<skip default-value="false">${maven.test.skip}</skip> | |
<skipExec>${maven.test.skip.exec}</skipExec> | |
<skipTests default-value="false">${skipTests}</skipTests> | |
<test>${test}</test> | |
<testClassesDirectory default-value="${project.build.testOutputDirectory}"/> | |
<testFailureIgnore default-value="false">${maven.test.failure.ignore}</testFailureIgnore> | |
<testNGArtifactName default-value="org.testng:testng">${testNGArtifactName}</testNGArtifactName> | |
<testSourceDirectory default-value="${project.build.testSourceDirectory}"/> | |
<threadCount>${threadCount}</threadCount> | |
<trimStackTrace default-value="true">${trimStackTrace}</trimStackTrace> | |
<useFile default-value="true">${surefire.useFile}</useFile> | |
<useManifestOnlyJar default-value="true">${surefire.useManifestOnlyJar}</useManifestOnlyJar> | |
<useSystemClassLoader default-value="true">${surefire.useSystemClassLoader}</useSystemClassLoader> | |
<useUnlimitedThreads default-value="false">${useUnlimitedThreads}</useUnlimitedThreads> | |
<workingDirectory>${basedir}</workingDirectory> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-jar-plugin:2.4:jar (default-jar) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<classesDirectory default-value="${project.build.outputDirectory}"/> | |
<defaultManifestFile default-value="${project.build.outputDirectory}/META-INF/MANIFEST.MF"/> | |
<finalName default-value="${project.build.finalName}">${jar.finalName}</finalName> | |
<forceCreation default-value="false">${jar.forceCreation}</forceCreation> | |
<outputDirectory default-value="${project.build.directory}"/> | |
<project default-value="${project}"/> | |
<session default-value="${session}"/> | |
<skipIfEmpty default-value="false">${jar.skipIfEmpty}</skipIfEmpty> | |
<useDefaultManifestFile default-value="false">${jar.useDefaultManifestFile}</useDefaultManifestFile> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.codehaus.mojo:appassembler-maven-plugin:1.8.1:assemble (assembly) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<artifacts default-value="${project.runtimeArtifacts}"/> | |
<assembleDirectory default-value="${project.build.directory}/appassembler">${assembleDirectory}</assembleDirectory> | |
<binFolder default-value="bin"/> | |
<buildFilters default-value="${project.build.filters}"/> | |
<configurationDirectory default-value="etc"/> | |
<configurationSourceDirectory default-value="src/main/config"/> | |
<copyConfigurationDirectory default-value="false"/> | |
<encoding default-value="${project.build.sourceEncoding}"/> | |
<filterConfigurationDirectory default-value="false"/> | |
<generateRepository default-value="true"/> | |
<includeConfigurationDirectoryInClasspath default-value="true"/> | |
<localRepository default-value="${localRepository}"/> | |
<logsDirectory>${logsDirectory}</logsDirectory> | |
<mavenProject default-value="${project}"/> | |
<programs> | |
<program> | |
<mainClass>org.xmlcml.ami2.plugins.gene.GenePlugin</mainClass> | |
<id>ami2-gene</id> | |
</program> | |
<program> | |
<mainClass>org.xmlcml.ami2.plugins.identifier.IdentifierPlugin</mainClass> | |
<id>ami2-identifier</id> | |
</program> | |
<program> | |
<mainClass>org.xmlcml.ami2.plugins.phylotree.PhyloTreePlugin</mainClass> | |
<id>ami2-phylotree</id> | |
</program> | |
<program> | |
<mainClass>org.xmlcml.ami2.plugins.regex.RegexPlugin</mainClass> | |
<id>ami2-regex</id> | |
</program> | |
<program> | |
<mainClass>org.xmlcml.ami2.plugins.sequence.SequencePlugin</mainClass> | |
<id>ami2-sequence</id> | |
</program> | |
<program> | |
<mainClass>org.xmlcml.ami2.plugins.species.SpeciesPlugin</mainClass> | |
<id>ami2-species</id> | |
</program> | |
<program> | |
<mainClass>org.xmlcml.ami2.plugins.word.WordPlugin</mainClass> | |
<id>ami2-word</id> | |
</program> | |
</programs> | |
<projectArtifact default-value="${project.artifact}"/> | |
<projectArtifactFirstInClassPath default-value="false"/> | |
<repositoryLayout default-value="default">flat</repositoryLayout> | |
<repositoryName default-value="repo"/> | |
<session default-value="${session}"/> | |
<showConsoleWindow default-value="true"/> | |
<tempDirectory>${tempDirectory}</tempDirectory> | |
<unixScriptTemplate>${unixScriptTemplate}</unixScriptTemplate> | |
<useAllProjectDependencies default-value="false"/> | |
<useTimestampInSnapshotFileName default-value="true"/> | |
<useWildcardClassPath default-value="false"/> | |
<windowsScriptTemplate>${windowsScriptTemplate}</windowsScriptTemplate> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.vafer:jdeb:1.3:jdeb (default) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<attach default-value="true"/> | |
<baseDir default-value="${basedir}"/> | |
<buildDirectory>${project.build.directory}</buildDirectory> | |
<changesIn default-value="[[baseDir]]/CHANGES.txt"/> | |
<changesOut default-value="[[buildDir]]/[[artifactId]]_[[version]]_all.changes"/> | |
<changesSave default-value="[[baseDir]]/CHANGES.txt"/> | |
<compression default-value="gzip"/> | |
<controlDir default-value="[[baseDir]]/src/deb/control"/> | |
<dataSet> | |
<data> | |
<src>/home/ross/workspace/clean/ami-plugin/target/appassembler/</src> | |
<type>directory</type> | |
<mapper> | |
<type>perm</type> | |
<filemode>555</filemode> | |
<prefix>/usr/share/ami-repo</prefix> | |
</mapper> | |
</data> | |
<data> | |
<type>link</type> | |
<symlink>true</symlink> | |
<linkName>/usr/bin/ami2-gene</linkName> | |
<linkTarget>/usr/share/ami-repo/bin/ami2-gene</linkTarget> | |
</data> | |
<data> | |
<type>link</type> | |
<symlink>true</symlink> | |
<linkName>/usr/bin/ami2-identifier</linkName> | |
<linkTarget>/usr/share/ami-repo/bin/ami2-identifier</linkTarget> | |
</data> | |
<data> | |
<type>link</type> | |
<symlink>true</symlink> | |
<linkName>/usr/bin/ami2-phylotree</linkName> | |
<linkTarget>/usr/share/ami-repo/bin/ami2-phylotree</linkTarget> | |
</data> | |
<data> | |
<type>link</type> | |
<symlink>true</symlink> | |
<linkName>/usr/bin/ami2-regex</linkName> | |
<linkTarget>/usr/share/ami-repo/bin/ami2-regex</linkTarget> | |
</data> | |
<data> | |
<type>link</type> | |
<symlink>true</symlink> | |
<linkName>/usr/bin/ami2-sequence</linkName> | |
<linkTarget>/usr/share/ami-repo/bin/ami2-sequence</linkTarget> | |
</data> | |
<data> | |
<type>link</type> | |
<symlink>true</symlink> | |
<linkName>/usr/bin/ami2-species</linkName> | |
<linkTarget>/usr/share/ami-repo/bin/ami2-species</linkTarget> | |
</data> | |
<data> | |
<type>link</type> | |
<symlink>true</symlink> | |
<linkName>/usr/bin/ami2-word</linkName> | |
<linkTarget>/usr/share/ami-repo/bin/ami2-word</linkTarget> | |
</data> | |
</dataSet> | |
<deb default-value="[[buildDir]]/[[artifactId]]_[[version]]_all.[[extension]]"/> | |
<installDir default-value="/opt/[[artifactId]]"/> | |
<project default-value="${project}"/> | |
<session default-value="${session}"/> | |
<settings default-value="${settings}"/> | |
<signCfgPrefix default-value="jdeb."/> | |
<signMethod default-value="debsig-verify"/> | |
<signPackage default-value="false"/> | |
<signRole default-value="origin"/> | |
<skip default-value="false"/> | |
<skipPOMs default-value="true"/> | |
<skipSubmodules default-value="false"/> | |
<snapshotEnv default-value="SNAPSHOT"/> | |
<snapshotExpand default-value="false"/> | |
<submodules default-value="true"/> | |
<type default-value="deb"/> | |
<verbose default-value="false"/> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-assembly-plugin:2.4.1:single (default) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<appendAssemblyId default-value="true">${assembly.appendAssemblyId}</appendAssemblyId> | |
<attach default-value="true">${assembly.attach}</attach> | |
<basedir default-value="${project.basedir}"/> | |
<classifier>${classifier}</classifier> | |
<descriptor>src/main/assembly/bin.xml</descriptor> | |
<descriptorId>${descriptorId}</descriptorId> | |
<dryRun default-value="false">${assembly.dryRun}</dryRun> | |
<encoding default-value="${project.build.sourceEncoding}">${encoding}</encoding> | |
<escapeString>${assembly.escapeString}</escapeString> | |
<finalName default-value="${project.build.finalName}"/> | |
<ignoreDirFormatExtensions default-value="true"/> | |
<ignoreMissingDescriptor default-value="false">${assembly.ignoreMissingDescriptor}</ignoreMissingDescriptor> | |
<ignorePermissions default-value="false">${assembly.ignorePermissions}</ignorePermissions> | |
<includeSite default-value="false">${includeSite}</includeSite> | |
<localRepository default-value="${localRepository}"/> | |
<outputDirectory default-value="${project.build.directory}"/> | |
<reactorProjects default-value="${reactorProjects}"/> | |
<recompressZippedFiles default-value="true"/> | |
<remoteRepositories default-value="${project.remoteArtifactRepositories}"/> | |
<runOnlyAtExecutionRoot default-value="false">${assembly.runOnlyAtExecutionRoot}</runOnlyAtExecutionRoot> | |
<siteDirectory default-value="${project.reporting.outputDirectory}"/> | |
<skipAssembly default-value="false">${assembly.skipAssembly}</skipAssembly> | |
<tarLongFileMode default-value="warn">${assembly.tarLongFileMode}</tarLongFileMode> | |
<tempRoot default-value="${project.build.directory}/archive-tmp"/> | |
<updateOnly default-value="false">${assembly.updateOnly}</updateOnly> | |
<useJvmChmod default-value="false">${assembly.useJvmChmod}</useJvmChmod> | |
<workDirectory default-value="${project.build.directory}/assembly/work"/> | |
<mavenSession default-value="${session}"/> | |
<project default-value="${project}"/> | |
</configuration> | |
[DEBUG] ----------------------------------------------------------------------- | |
[DEBUG] Goal: org.apache.maven.plugins:maven-install-plugin:2.4:install (default-install) | |
[DEBUG] Style: Regular | |
[DEBUG] Configuration: <?xml version="1.0" encoding="UTF-8"?> | |
<configuration> | |
<artifact default-value="${project.artifact}"/> | |
<attachedArtifacts default-value="${project.attachedArtifacts}"/> | |
<createChecksum default-value="false">${createChecksum}</createChecksum> | |
<localRepository>${localRepository}</localRepository> | |
<packaging default-value="${project.packaging}"/> | |
<pomFile default-value="${project.file}"/> | |
<skip default-value="false">${maven.install.skip}</skip> | |
<updateReleaseInfo default-value="false">${updateReleaseInfo}</updateReleaseInfo> | |
</configuration> | |
[DEBUG] ======================================================================= | |
[DEBUG] Could not find metadata org.xml-cml:norma:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:norma:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:norma:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:norma:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:cmine:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:html:0.2-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:svg:0.2-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:euclid:1.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for uk.ac.cam.ch.wwmm:wwmm-parent:5-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:svg2xml:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:pdf2svg:1.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:imageanalysis:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:imageanalysis:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:imageanalysis:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:imageanalysis:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:svgbuilder:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:diagramanalyzer:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:diagramanalyzer:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:diagramanalyzer:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:diagramanalyzer:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] Could not find metadata org.xml-cml:javaocrnew:0.1-SNAPSHOT/maven-metadata.xml in local (/home/ross/.m2/repository) | |
[DEBUG] Failure to find org.xml-cml:javaocrnew:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo-snapshots/ was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-snapshots has elapsed or updates are forced | |
[DEBUG] Failure to find org.xml-cml:javaocrnew:0.1-SNAPSHOT/maven-metadata.xml in http://www.ebi.ac.uk/~maven/m2repo was cached in the local repository, resolution will not be reattempted until the update interval of ebi-repo-3rd has elapsed or updates are forced | |
[DEBUG] Skipped remote update check for org.xml-cml:javaocrnew:0.1-SNAPSHOT/maven-metadata.xml, locally cached metadata up-to-date. | |
[DEBUG] org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
[DEBUG] org.xml-cml:norma:jar:0.1-SNAPSHOT:compile | |
[DEBUG] org.xml-cml:cmine:jar:0.1-SNAPSHOT:compile | |
[DEBUG] org.xml-cml:html:jar:0.2-SNAPSHOT:compile | |
[DEBUG] org.xml-cml:svg:jar:0.2-SNAPSHOT:compile | |
[DEBUG] org.xml-cml:euclid:jar:1.1-SNAPSHOT:compile | |
[DEBUG] log4j:log4j:jar:1.2.16:compile | |
[DEBUG] org.apache.commons:commons-math:jar:2.2:compile | |
[DEBUG] joda-time:joda-time:jar:1.6.2:compile | |
[DEBUG] xom:xom:jar:1.2.5:compile | |
[DEBUG] xml-apis:xml-apis:jar:1.4.01:compile | |
[DEBUG] jtidy:jtidy:jar:4aug2000r7-dev:compile | |
[DEBUG] org.ccil.cowan.tagsoup:tagsoup:jar:1.2:compile | |
[DEBUG] net.sourceforge.htmlunit:htmlunit:jar:2.15:compile | |
[DEBUG] xalan:xalan:jar:2.7.1:compile | |
[DEBUG] xalan:serializer:jar:2.7.1:compile | |
[DEBUG] commons-collections:commons-collections:jar:3.2.1:compile | |
[DEBUG] org.apache.commons:commons-lang3:jar:3.3.2:compile | |
[DEBUG] org.apache.httpcomponents:httpclient:jar:4.3.3:compile | |
[DEBUG] org.apache.httpcomponents:httpcore:jar:4.3.2:compile | |
[DEBUG] org.apache.httpcomponents:httpmime:jar:4.3.3:compile | |
[DEBUG] commons-codec:commons-codec:jar:1.9:compile | |
[DEBUG] net.sourceforge.htmlunit:htmlunit-core-js:jar:2.15:compile | |
[DEBUG] xerces:xercesImpl:jar:2.11.0:compile | |
[DEBUG] net.sourceforge.nekohtml:nekohtml:jar:1.9.21:compile | |
[DEBUG] net.sourceforge.cssparser:cssparser:jar:0.9.14:compile | |
[DEBUG] org.w3c.css:sac:jar:1.3:compile | |
[DEBUG] commons-logging:commons-logging:jar:1.1.3:compile | |
[DEBUG] org.eclipse.jetty:jetty-websocket:jar:8.1.15.v20140411:compile | |
[DEBUG] org.eclipse.jetty:jetty-util:jar:8.1.15.v20140411:compile | |
[DEBUG] org.eclipse.jetty:jetty-io:jar:8.1.15.v20140411:compile | |
[DEBUG] org.eclipse.jetty:jetty-http:jar:8.1.15.v20140411:compile | |
[DEBUG] com.google.code.gson:gson:jar:2.3.1:compile | |
[DEBUG] net.sf.saxon:Saxon-HE:jar:9.6.0-3:compile | |
[DEBUG] org.xml-cml:svg2xml:jar:0.1-SNAPSHOT:compile | |
[DEBUG] org.xml-cml:pdf2svg:jar:1.1-SNAPSHOT:compile | |
[DEBUG] org.apache.pdfbox:pdfbox:jar:1.8.8:compile | |
[DEBUG] org.apache.pdfbox:fontbox:jar:1.8.8:compile | |
[DEBUG] org.apache.pdfbox:jempbox:jar:1.8.8:compile | |
[DEBUG] org.bouncycastle:bcprov-jdk16:jar:1.46:compile | |
[DEBUG] org.jsoup:jsoup:jar:1.8.2:compile | |
[DEBUG] xmlunit:xmlunit:jar:1.4:compile | |
[DEBUG] org.xml-cml:diagramanalyzer:jar:0.1-SNAPSHOT:compile | |
[DEBUG] org.xml-cml:javaocrnew:jar:0.1-SNAPSHOT:compile | |
[DEBUG] org.xml-cml:imageanalysis:jar:0.1-SNAPSHOT:compile | |
[DEBUG] org.boofcv:io:jar:0.17:compile | |
[DEBUG] org.ddogleg:ddogleg:jar:0.5:compile | |
[DEBUG] org.boofcv:ip:jar:0.17:compile | |
[DEBUG] com.thoughtworks.xstream:xstream:jar:1.4.7:compile | |
[DEBUG] xmlpull:xmlpull:jar:1.1.3.1:compile | |
[DEBUG] xpp3:xpp3_min:jar:1.1.4c:compile | |
[DEBUG] org.georegression:georegression:jar:0.6:compile | |
[DEBUG] com.googlecode.efficient-java-matrix-library:ejml:jar:0.25:compile | |
[DEBUG] org.boofcv:feature:jar:0.17:compile | |
[DEBUG] org.boofcv:visualize:jar:0.17:compile | |
[DEBUG] org.boofcv:recognition:jar:0.17:compile | |
[DEBUG] org.boofcv:sfm:jar:0.17:compile | |
[DEBUG] org.boofcv:calibration:jar:0.17:compile | |
[DEBUG] org.boofcv:geo:jar:0.17:compile | |
[DEBUG] org.imgscalr:imgscalr-lib:jar:4.2:compile | |
[DEBUG] org.xml-cml:svgbuilder:jar:0.1-SNAPSHOT:compile | |
[DEBUG] com.google.code.findbugs:jsr305:jar:2.0.2:compile | |
[DEBUG] org.apache.lucene:lucene-core:jar:4.10.3:compile | |
[DEBUG] org.apache.lucene:lucene-analyzers-common:jar:4.10.3:compile | |
[DEBUG] com.google.guava:guava:jar:18.0:compile | |
[DEBUG] junit:junit:jar:4.11:test | |
[DEBUG] org.hamcrest:hamcrest-core:jar:1.3:test | |
[DEBUG] blogspot.software-and-algorithms:stern-library:jar:0.1:compile | |
[DEBUG] org.vafer:jdeb:jar:1.3:provided | |
[DEBUG] commons-io:commons-io:jar:2.4:compile | |
[DEBUG] org.apache.commons:commons-compress:jar:1.7:provided | |
[DEBUG] org.tukaani:xz:jar:1.4:provided | |
[DEBUG] org.apache.maven:maven-core:jar:3.2.2:provided | |
[DEBUG] org.apache.maven:maven-model:jar:3.2.2:provided | |
[DEBUG] org.apache.maven:maven-settings:jar:3.2.2:provided | |
[DEBUG] org.apache.maven:maven-settings-builder:jar:3.2.2:provided | |
[DEBUG] org.apache.maven:maven-repository-metadata:jar:3.2.2:provided | |
[DEBUG] org.apache.maven:maven-artifact:jar:3.2.2:provided | |
[DEBUG] org.apache.maven:maven-model-builder:jar:3.2.2:provided | |
[DEBUG] org.apache.maven:maven-aether-provider:jar:3.2.2:provided | |
[DEBUG] org.eclipse.aether:aether-spi:jar:0.9.0.M2:provided | |
[DEBUG] org.eclipse.aether:aether-impl:jar:0.9.0.M2:provided | |
[DEBUG] org.eclipse.aether:aether-api:jar:0.9.0.M2:provided | |
[DEBUG] org.eclipse.aether:aether-util:jar:0.9.0.M2:provided | |
[DEBUG] org.eclipse.sisu:org.eclipse.sisu.plexus:jar:0.0.0.M5:provided | |
[DEBUG] javax.enterprise:cdi-api:jar:1.0:provided | |
[DEBUG] javax.annotation:jsr250-api:jar:1.0:provided | |
[DEBUG] javax.inject:javax.inject:jar:1:provided | |
[DEBUG] org.sonatype.sisu:sisu-guice:jar:no_aop:3.1.0:provided | |
[DEBUG] aopalliance:aopalliance:jar:1.0:provided | |
[DEBUG] org.eclipse.sisu:org.eclipse.sisu.inject:jar:0.0.0.M5:provided | |
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.19:provided | |
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0.17:provided | |
[DEBUG] org.codehaus.plexus:plexus-classworlds:jar:2.5.1:provided | |
[DEBUG] org.codehaus.plexus:plexus-component-annotations:jar:1.5.5:provided | |
[DEBUG] org.sonatype.plexus:plexus-sec-dispatcher:jar:1.3:provided | |
[DEBUG] org.sonatype.plexus:plexus-cipher:jar:1.4:provided | |
[DEBUG] org.apache.maven:maven-plugin-api:jar:3.2.2:provided | |
[DEBUG] org.apache.ant:ant:jar:1.9.3:provided | |
[DEBUG] org.apache.ant:ant-launcher:jar:1.9.3:provided | |
[DEBUG] org.bouncycastle:bcpg-jdk15on:jar:1.51:provided | |
[DEBUG] org.bouncycastle:bcprov-jdk15on:jar:1.51:provided | |
[DEBUG] com.jayway.jsonpath:json-path:jar:2.0.0:compile | |
[DEBUG] org.slf4j:slf4j-api:jar:1.7.10:compile | |
[DEBUG] net.minidev:json-smart:jar:2.1.1:compile | |
[DEBUG] net.minidev:asm:jar:1.0.2:compile | |
[DEBUG] asm:asm:jar:3.3.1:compile | |
[INFO] | |
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ ami2 --- | |
[DEBUG] Created new class realm maven.api | |
[DEBUG] Importing foreign packages into class realm maven.api | |
[DEBUG] Imported: org.apache.maven.wagon.events < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.transfer < plexus.core | |
[DEBUG] Imported: org.apache.maven.exception < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.metadata < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.util.xml.Xpp3Dom < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.collection < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.version < plexus.core | |
[DEBUG] Imported: org.apache.maven.monitor < plexus.core | |
[DEBUG] Imported: org.apache.maven.wagon.repository < plexus.core | |
[DEBUG] Imported: org.apache.maven.repository < plexus.core | |
[DEBUG] Imported: org.apache.maven.wagon.resource < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.logging < plexus.core | |
[DEBUG] Imported: org.apache.maven.profiles < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.repository < plexus.core | |
[DEBUG] Imported: org.apache.maven.classrealm < plexus.core | |
[DEBUG] Imported: org.apache.maven.execution < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.artifact < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.spi < plexus.core | |
[DEBUG] Imported: org.apache.maven.reporting < plexus.core | |
[DEBUG] Imported: org.apache.maven.usability < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.container < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.component < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlSerializer < plexus.core | |
[DEBUG] Imported: org.apache.maven.wagon.authentication < plexus.core | |
[DEBUG] Imported: org.apache.maven.lifecycle < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.classworlds < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.graph < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.* < plexus.core | |
[DEBUG] Imported: org.apache.maven.settings < plexus.core | |
[DEBUG] Imported: org.codehaus.classworlds < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.impl < plexus.core | |
[DEBUG] Imported: org.apache.maven.wagon.* < plexus.core | |
[DEBUG] Imported: org.apache.maven.toolchain < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.deployment < plexus.core | |
[DEBUG] Imported: org.apache.maven.wagon.observers < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParserException < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.util.xml.pull.XmlPullParser < plexus.core | |
[DEBUG] Imported: org.apache.maven.configuration < plexus.core | |
[DEBUG] Imported: org.apache.maven.cli < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.installation < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.context < plexus.core | |
[DEBUG] Imported: org.apache.maven.wagon.authorization < plexus.core | |
[DEBUG] Imported: org.apache.maven.project < plexus.core | |
[DEBUG] Imported: org.apache.maven.rtinfo < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.lifecycle < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.configuration < plexus.core | |
[DEBUG] Imported: org.apache.maven.artifact < plexus.core | |
[DEBUG] Imported: org.apache.maven.model < plexus.core | |
[DEBUG] Imported: org.apache.maven.* < plexus.core | |
[DEBUG] Imported: org.apache.maven.wagon.proxy < plexus.core | |
[DEBUG] Imported: org.sonatype.aether.resolution < plexus.core | |
[DEBUG] Imported: org.apache.maven.plugin < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.* < plexus.core | |
[DEBUG] Imported: org.codehaus.plexus.personality < plexus.core | |
[DEBUG] Populating class realm maven.api | |
[DEBUG] org.apache.maven.plugins:maven-clean-plugin:jar:2.5: | |
[DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.6:compile | |
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0:compile | |
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-clean-plugin:2.5 | |
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-clean-plugin:2.5 | |
[DEBUG] Imported: < maven.api | |
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-clean-plugin:2.5 | |
[DEBUG] Included: org.apache.maven.plugins:maven-clean-plugin:jar:2.5 | |
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-api:jar:2.0.6 | |
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-clean-plugin:2.5:clean from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-clean-plugin:2.5, parent: sun.misc.Launcher$AppClassLoader@24065c4] | |
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-clean-plugin:2.5:clean' with basic configurator --> | |
[DEBUG] (f) directory = /home/ross/workspace/clean/ami-plugin/target | |
[DEBUG] (f) excludeDefaultDirectories = false | |
[DEBUG] (f) failOnError = true | |
[DEBUG] (f) followSymLinks = false | |
[DEBUG] (f) outputDirectory = /home/ross/workspace/clean/ami-plugin/target/classes | |
[DEBUG] (f) reportDirectory = /home/ross/workspace/clean/ami-plugin/target/site | |
[DEBUG] (f) retryOnError = true | |
[DEBUG] (f) skip = false | |
[DEBUG] (f) testOutputDirectory = /home/ross/workspace/clean/ami-plugin/target/test-classes | |
[DEBUG] -- end configuration -- | |
[INFO] Deleting /home/ross/workspace/clean/ami-plugin/target | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/log4j.properties | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups/TaxdumpLookup$TaxonType.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups/TaxdumpLookup.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups/ENALookup.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups/GenbankLookup.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups/WikipediaLookup.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups/GBIFLookup.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups/PubmedLookup.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/lookups | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/ami.dot | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/sequence/SequenceArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/sequence/args.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/sequence/SequenceResultElement.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/sequence | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/graphchem/args.xml | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/graphchem | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/WordResultsElementList.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/clinicaltrials.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/clinicaltrials200.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words_spanish_es.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_latvian_1_lv.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_2_pt.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_3_en.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_bulgarian_1_bg.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_2_ar.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_2_fi.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_2_el.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_1_ru.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_1_it.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_persian_1_fa.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_danish_1_da.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_6_en.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_1_de.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_1_ar.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_japanese_1_ja.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_1_cz.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_1_en.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_2_sv.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_2_cz.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_2_sk.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_3_pl.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_1_fi.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_1_es.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_1_sk.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_catalan_1_ca.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_1_pl.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_2_nl.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_2_tr.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_2_en.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_2_it.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_2_es.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_2_fr.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_2_no.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_1_sv.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_chinese_1_zh.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_1_pt.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_2_ru.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_romanian_1_ro.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_2_pl.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_2_de.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_3_cz.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_1_nl.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_1_fr.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_indonesian_1_id.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_2_hu.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_1_el.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_5_en.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_4_google_en.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_brazil_1_br.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_1_no.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_1_tr.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_1_hu.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hindi_1_hi.txt | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/project-information.txt | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24 | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.pub.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/WordCollectionFactory.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.fr.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/WordSetWrapper.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/WordResultsElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/WordPlugin.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/args.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/WordArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/WordResultElement.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/ami.dot.png | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/PhyloConstants.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/RunPhylo.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/SVGXTreeNode.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ScientificNameList.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/PhyloResultElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/PhyloTreeSVGAnalyzer.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/PhyloResultsElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlFactory.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlTree.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlNode.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlEdge.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlOtu.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlOtus.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlTrees.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlNEXML.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/nexml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsemSpeciesEditor.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/SVGXTreeEdge.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/LineContainer.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsemNew.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/PhyloTreePlugin.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/args.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/class.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/binomial.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/genus.txt | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/role.txt | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/SVGXTree.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/simple/SimpleArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/simple/args.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/simple/SimplePlugin.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/simple | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/SpeciesResultElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/SpeciesResultsElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/LinneanNamer.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/speciesFromLinnaeus.tsv | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/LinneanName.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/SpeciesSearcher.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/SpeciesPlugin.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/args.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/SpeciesArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/NameMultimap.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/NamedPattern.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/identifier/IdentifierPlugin.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/identifier/IdentifierSearcher.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/identifier/IdentifierArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/identifier/args.xml | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/identifier | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/AMISearcher.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/NamedGroupList.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/GeneArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/GenePlugin.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/GeneResultsElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/GeneSearcher.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/args.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/hgnc/non_alt_loci_set.txt | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/hgnc | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/GeneResultElement.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/MatcherResult.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/am1.dot.png | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/dummy/DummyPlugin.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/dummy/DummyArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/dummy/DummyResultsElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/dummy/DummyResultElement.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/dummy/DummySearcher.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/dummy | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/NamedGroup.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/args.xml | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/AMIArgProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/XPathProcessor.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/RegexComponent.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/RegexSearcher.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/CompoundRegexList.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/RegexPlugin.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/CompoundRegex.class | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/args.xml | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/AMIPlugin.class | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/hindawi/documentTagger.xml | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/hindawi | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/bmc/documentTagger.xml | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/bmc | |
[INFO] Deleting file /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/plosone/documentTagger.xml | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/plosone | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2 | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes/org | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target/classes | |
[INFO] Deleting directory /home/ross/workspace/clean/ami-plugin/target | |
[DEBUG] Skipping non-existing directory /home/ross/workspace/clean/ami-plugin/target/classes | |
[DEBUG] Skipping non-existing directory /home/ross/workspace/clean/ami-plugin/target/test-classes | |
[DEBUG] Skipping non-existing directory /home/ross/workspace/clean/ami-plugin/target/site | |
[INFO] | |
[INFO] --- maven-resources-plugin:2.3:resources (default-resources) @ ami2 --- | |
[DEBUG] org.apache.maven.plugins:maven-resources-plugin:jar:2.3: | |
[DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-project:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-settings:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-profile:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-model:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-artifact-manager:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-repository-metadata:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-plugin-registry:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-artifact:jar:2.0.6:compile | |
[DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile | |
[DEBUG] junit:junit:jar:3.8.1:compile | |
[DEBUG] classworlds:classworlds:jar:1.1-alpha-2:compile | |
[DEBUG] org.codehaus.plexus:plexus-utils:jar:1.5.6:compile | |
[DEBUG] org.apache.maven.shared:maven-filtering:jar:1.0-beta-2:compile | |
[DEBUG] org.apache.maven:maven-core:jar:2.0.6:compile | |
[DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.6:compile | |
[DEBUG] org.apache.maven.reporting:maven-reporting-api:jar:2.0.6:compile | |
[DEBUG] org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7:compile | |
[DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.0.6:compile | |
[DEBUG] commons-cli:commons-cli:jar:1.0:compile | |
[DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.0.6:compile | |
[DEBUG] org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4:compile | |
[DEBUG] org.apache.maven:maven-monitor:jar:2.0.6:compile | |
[DEBUG] org.codehaus.plexus:plexus-interpolation:jar:1.6:compile | |
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.3 | |
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.3 | |
[DEBUG] Imported: < maven.api | |
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-resources-plugin:2.3 | |
[DEBUG] Included: org.apache.maven.plugins:maven-resources-plugin:jar:2.3 | |
[DEBUG] Included: junit:junit:jar:3.8.1 | |
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:1.5.6 | |
[DEBUG] Included: org.apache.maven.shared:maven-filtering:jar:1.0-beta-2 | |
[DEBUG] Included: org.apache.maven.reporting:maven-reporting-api:jar:2.0.6 | |
[DEBUG] Included: org.apache.maven.doxia:doxia-sink-api:jar:1.0-alpha-7 | |
[DEBUG] Included: commons-cli:commons-cli:jar:1.0 | |
[DEBUG] Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4 | |
[DEBUG] Included: org.codehaus.plexus:plexus-interpolation:jar:1.6 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-api:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-project:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-settings:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-profile:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-model:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-artifact-manager:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-repository-metadata:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-registry:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-artifact:jar:2.0.6 | |
[DEBUG] Excluded: org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1 | |
[DEBUG] Excluded: classworlds:classworlds:jar:1.1-alpha-2 | |
[DEBUG] Excluded: org.apache.maven:maven-core:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-error-diagnostics:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-descriptor:jar:2.0.6 | |
[DEBUG] Excluded: org.apache.maven:maven-monitor:jar:2.0.6 | |
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-resources-plugin:2.3:resources from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-resources-plugin:2.3, parent: sun.misc.Launcher$AppClassLoader@24065c4] | |
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-resources-plugin:2.3:resources' with basic configurator --> | |
[DEBUG] (f) filters = [] | |
[DEBUG] (s) includeEmptyDirs = false | |
[DEBUG] (s) outputDirectory = /home/ross/workspace/clean/ami-plugin/target/classes | |
[DEBUG] (s) overwrite = false | |
[DEBUG] (f) project = MavenProject: org.xml-cml:ami2:0.1-SNAPSHOT @ /home/ross/workspace/clean/ami-plugin/pom.xml | |
[DEBUG] (s) resources = [Resource {targetPath: null, filtering: false, FileSet {directory: /home/ross/workspace/clean/ami-plugin/src/main/resources, PatternSet [includes: {}, excludes: {}]}}] | |
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@29b6a261 | |
[DEBUG] -- end configuration -- | |
[DEBUG] properties used {java.vendor=Oracle Corporation, env.IM_CONFIG_PHASE=1, env.LESSOPEN=| /usr/bin/lesspipe %s, env.NVM_BIN=/home/ross/.nvm/v0.10.38/bin, env._LXSESSION_PID=1384, sun.java.launcher=SUN_STANDARD, env.QT_IM_MODULE=ibus, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, env._system_arch=x86_64, env.GEM_HOME=/home/ross/.rvm/gems/ruby-2.1.2, os.name=Linux, env.UPSTART_SESSION=unix:abstract=/com/ubuntu/upstart-session/1000/1111, sun.boot.class.path=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/resources.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/rt.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/sunrsasign.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jsse.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jce.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/charsets.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/rhino.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/jfr.jar:/usr/lib/jvm/java-7-openjdk-amd64/jre/classes, env.PWD=/home/ross/workspace/clean/ami-plugin, env.LANG=en_GB.UTF-8, java.vm.specification.vendor=Oracle Corporation, env.XDG_MENU_PREFIX=lxde-, java.runtime.version=1.7.0_79-b14, env.MY_RUBY_HOME=/home/ross/.rvm/rubies/ruby-2.1.2, env.GTK_IM_MODULE=xim, env.DEFAULTS_PATH=/usr/share/gconf/Lubuntu.default.path, env.UPSTART_EVENTS=started xsession, env.XDG_VTNR=7, env.DISPLAY=:0, env.rvm_version=1.26.11 (latest), user.name=ross, env.QT4_IM_MODULE=ibus, env._=/usr/bin/mvn, maven.build.version=Apache Maven 3.0.5, env.USER=ross, env.SHELL=/bin/bash, env.DESKTOP_SESSION=Lubuntu, env.XDG_DATA_DIRS=/etc/xdg/lubuntu:/usr/local/share:/usr/share:/usr/share/gdm:/var/lib/menu-xdg:/usr/share/Lubuntu:/usr/local/share/:/usr/share/, env.NODE_PATH=/usr/lib/nodejs:/usr/lib/node_modules:/usr/share/javascript, env._system_type=Linux, env.PATH=/home/ross/.nvm/v0.10.38/bin:/home/ross/.rvm/gems/ruby-2.1.2/bin:/home/ross/.rvm/gems/ruby-2.1.2@global/bin:/home/ross/.rvm/rubies/ruby-2.1.2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/ross/.rvm/bin:/home/ross/.rvm/bin, env.XDG_CURRENT_DESKTOP=LXDE, user.language=en, env.rvm_prefix=/home/ross, env.XDG_SESSION_DESKTOP=Lubuntu, sun.boot.library.path=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64, classworlds.conf=/usr/share/maven/bin/m2.conf, env.UPSTART_JOB=lxsession, env.rvm_path=/home/ross/.rvm, env.RUBY_VERSION=ruby-2.1.2, java.version=1.7.0_79, user.timezone=, env.DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-f1mGjUM10e, sun.arch.data.model=64, env._system_name=Ubuntu, java.endorsed.dirs=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/endorsed, sun.cpu.isalist=, sun.jnu.encoding=UTF-8, env.rvm_bin_path=/home/ross/.rvm/bin, file.encoding.pkg=sun.io, env.SHLVL=1, file.separator=/, env._system_version=15.04, java.specification.name=Java Platform API Specification, java.class.version=51.0, env.GDMSESSION=Lubuntu, user.country=GB, env.GNOME_KEYRING_PID=, java.home=/usr/lib/jvm/java-7-openjdk-amd64/jre, java.vm.info=mixed mode, env.LOGNAME=ross, os.version=3.19.0-26-generic, env.SAL_USE_VCLPLUGIN=gtk, env.NVM_IOJS_ORG_VERSION_LISTING=https://iojs.org/dist/index.tab, path.separator=:, java.vm.version=24.79-b02, env.UPSTART_INSTANCE=, env.LANGUAGE=en_GB:en, env.XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0, env.QT_QPA_PLATFORMTHEME=lxqt, env.NVM_NODEJS_ORG_MIRROR=https://nodejs.org/dist, env.IRBRC=/home/ross/.rvm/rubies/ruby-2.1.2/.irbrc, env.JAVA_HOME=/usr/lib/jvm/java-7-openjdk-amd64, env.XDG_SESSION_TYPE=x11, env.SESSIONTYPE=lxsession, env.TERM=xterm, java.awt.printerjob=sun.print.PSPrinterJob, sun.io.unicode.encoding=UnicodeLittle, awt.toolkit=sun.awt.X11.XToolkit, env.XMODIFIERS=@im=ibus, env.QT_PLATFORM_PLUGIN=lxqt, env.MANPATH=/home/ross/.nvm/v0.10.38/share/man:/home/ross/.rvm/rubies/ruby-2.1.2/share/man:/usr/local/man:/usr/local/share/man:/usr/share/man:/home/ross/.rvm/man, env.GEM_PATH=/home/ross/.rvm/gems/ruby-2.1.2:/home/ross/.rvm/gems/ruby-2.1.2@global, env.GDM_LANG=en_GB, user.home=/home/ross, env.JOB=dbus, env.OLDPWD=/home/ross/workspace/clean/ami-plugin, java.specification.vendor=Oracle Corporation, guava.version=18.0, java.vendor.url=http://java.oracle.com/, java.library.path=/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib, env.XDG_SEAT=seat0, java.vm.vendor=Oracle Corporation, java.runtime.name=OpenJDK Runtime Environment, maven.home=/usr/share/maven, java.class.path=/usr/share/maven/boot/plexus-classworlds-2.x.jar, sun.java.command=org.codehaus.plexus.classworlds.launcher.Launcher clean install -X, env.XDG_SESSION_ID=c1, maven.version=3.0.5, java.vm.specification.name=Java Virtual Machine Specification, java.vm.specification.version=1.7, sun.os.patch.level=unknown, sun.cpu.endian=little, env.HOME=/home/ross, env.XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0, env.LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:, java.io.tmpdir=/tmp, env.NVM_PATH=/home/ross/.nvm/v0.10.38/lib/node, java.vendor.url.bug=http://bugreport.sun.com/bugreport/, env.SSH_AUTH_SOCK=/run/user/1000/keyring/ssh, env.XDG_CONFIG_HOME=/home/ross/.config, env.CLUTTER_IM_MODULE=xim, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, os.arch=amd64, env.INSTANCE=, env.XDG_RUNTIME_DIR=/run/user/1000, java.ext.dirs=/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/ext:/usr/java/packages/lib/ext, env.SESSION=Lubuntu, env.XAUTHORITY=/home/ross/.Xauthority, user.dir=/home/ross/workspace/clean/ami-plugin, env.MANDATORY_PATH=/usr/share/gconf/Lubuntu.mandatory.path, line.separator= | |
, java.vm.name=OpenJDK 64-Bit Server VM, env.NVM_IOJS_ORG_MIRROR=https://iojs.org/dist, env.XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/ross, file.encoding=UTF-8, env.NVM_DIR=/home/ross/.nvm, env.GPG_AGENT_INFO=/run/user/1000/keyring/gpg:0:1, java.specification.version=1.7, env.GNOME_KEYRING_CONTROL=, env.XDG_CONFIG_DIRS=/etc/xdg/lubuntu:/etc/xdg/xdg-Lubuntu:/usr/share/upstart/xdg:/etc/xdg, env.LESSCLOSE=/usr/bin/lesspipe %s %s} | |
[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent! | |
[DEBUG] resource with targetPath null | |
directory /home/ross/workspace/clean/ami-plugin/src/main/resources | |
excludes [] | |
includes [] | |
[INFO] Copying 85 resources | |
[DEBUG] file documentTagger.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/tagger/plosone/documentTagger.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/plosone/documentTagger.xml | |
[DEBUG] file documentTagger.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/tagger/bmc/documentTagger.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/bmc/documentTagger.xml | |
[DEBUG] file documentTagger.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/tagger/hindawi/documentTagger.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/tagger/hindawi/documentTagger.xml | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/regex/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/regex/args.xml | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/args.xml | |
[DEBUG] file am1.dot.png has a non filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/am1.dot.png to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/am1.dot.png | |
[DEBUG] file non_alt_loci_set.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/gene/hgnc/non_alt_loci_set.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/hgnc/non_alt_loci_set.txt | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/gene/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/gene/args.xml | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/identifier/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/identifier/args.xml | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/species/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/args.xml | |
[DEBUG] file speciesFromLinnaeus.tsv has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/species/speciesFromLinnaeus.tsv to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/species/speciesFromLinnaeus.tsv | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/simple/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/simple/args.xml | |
[DEBUG] file role.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/taxdump/role.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/role.txt | |
[DEBUG] file genus.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/taxdump/genus.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/genus.txt | |
[DEBUG] file binomial.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/taxdump/binomial.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/binomial.txt | |
[DEBUG] file class.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/taxdump/class.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/taxdump/class.txt | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/args.xml | |
[DEBUG] file ijsemNew.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/ijsemNew.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsemNew.xml | |
[DEBUG] file ijsemSpeciesEditor.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/phylotree/ijsemSpeciesEditor.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/phylotree/ijsemSpeciesEditor.xml | |
[DEBUG] file ami.dot.png has a non filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/ami.dot.png to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/ami.dot.png | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/args.xml | |
[DEBUG] file stopwords.fr.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stopwords.fr.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.fr.txt | |
[DEBUG] file stopwords.pub.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stopwords.pub.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.pub.txt | |
[DEBUG] file project-information.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/project-information.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/project-information.txt | |
[DEBUG] file stop-words_hindi_1_hi.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hindi_1_hi.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hindi_1_hi.txt | |
[DEBUG] file stop-words_hungarian_1_hu.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_1_hu.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_1_hu.txt | |
[DEBUG] file stop-words_turkish_1_tr.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_1_tr.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_1_tr.txt | |
[DEBUG] file stop-words_norwegian_1_no.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_1_no.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_1_no.txt | |
[DEBUG] file stop-words_brazil_1_br.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_brazil_1_br.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_brazil_1_br.txt | |
[DEBUG] file stop-words_english_4_google_en.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_4_google_en.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_4_google_en.txt | |
[DEBUG] file stop-words_english_5_en.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_5_en.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_5_en.txt | |
[DEBUG] file stop-words_greek_1_el.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_1_el.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_1_el.txt | |
[DEBUG] file stop-words_hungarian_2_hu.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_2_hu.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_hungarian_2_hu.txt | |
[DEBUG] file stop-words_indonesian_1_id.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_indonesian_1_id.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_indonesian_1_id.txt | |
[DEBUG] file stop-words_french_1_fr.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_1_fr.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_1_fr.txt | |
[DEBUG] file stop-words_dutch_1_nl.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_1_nl.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_1_nl.txt | |
[DEBUG] file stop-words_czech_3_cz.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_3_cz.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_3_cz.txt | |
[DEBUG] file stop-words_german_2_de.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_2_de.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_2_de.txt | |
[DEBUG] file stop-words_polish_2_pl.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_2_pl.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_2_pl.txt | |
[DEBUG] file stop-words_romanian_1_ro.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_romanian_1_ro.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_romanian_1_ro.txt | |
[DEBUG] file stop-words_russian_2_ru.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_2_ru.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_2_ru.txt | |
[DEBUG] file stop-words_portugese_1_pt.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_1_pt.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_1_pt.txt | |
[DEBUG] file stop-words_chinese_1_zh.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_chinese_1_zh.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_chinese_1_zh.txt | |
[DEBUG] file stop-words_swedish_1_sv.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_1_sv.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_1_sv.txt | |
[DEBUG] file stop-words_norwegian_2_no.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_2_no.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_norwegian_2_no.txt | |
[DEBUG] file stop-words_french_2_fr.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_2_fr.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_french_2_fr.txt | |
[DEBUG] file stop-words_spanish_2_es.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_2_es.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_2_es.txt | |
[DEBUG] file stop-words_italian_2_it.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_2_it.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_2_it.txt | |
[DEBUG] file stop-words_english_2_en.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_2_en.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_2_en.txt | |
[DEBUG] file stop-words_turkish_2_tr.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_2_tr.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_turkish_2_tr.txt | |
[DEBUG] file stop-words_dutch_2_nl.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_2_nl.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_dutch_2_nl.txt | |
[DEBUG] file stop-words_polish_1_pl.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_1_pl.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_1_pl.txt | |
[DEBUG] file stop-words_catalan_1_ca.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_catalan_1_ca.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_catalan_1_ca.txt | |
[DEBUG] file stop-words_slovak_1_sk.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_1_sk.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_1_sk.txt | |
[DEBUG] file stop-words_spanish_1_es.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_1_es.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_spanish_1_es.txt | |
[DEBUG] file stop-words_finnish_1_fi.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_1_fi.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_1_fi.txt | |
[DEBUG] file stop-words_polish_3_pl.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_3_pl.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_polish_3_pl.txt | |
[DEBUG] file stop-words_slovak_2_sk.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_2_sk.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_slovak_2_sk.txt | |
[DEBUG] file stop-words_czech_2_cz.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_2_cz.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_2_cz.txt | |
[DEBUG] file stop-words_swedish_2_sv.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_2_sv.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_swedish_2_sv.txt | |
[DEBUG] file stop-words_english_1_en.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_1_en.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_1_en.txt | |
[DEBUG] file stop-words_czech_1_cz.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_1_cz.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_czech_1_cz.txt | |
[DEBUG] file stop-words_japanese_1_ja.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_japanese_1_ja.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_japanese_1_ja.txt | |
[DEBUG] file stop-words_arabic_1_ar.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_1_ar.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_1_ar.txt | |
[DEBUG] file stop-words_german_1_de.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_1_de.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_german_1_de.txt | |
[DEBUG] file stop-words_english_6_en.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_6_en.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_6_en.txt | |
[DEBUG] file stop-words_danish_1_da.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_danish_1_da.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_danish_1_da.txt | |
[DEBUG] file stop-words_persian_1_fa.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_persian_1_fa.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_persian_1_fa.txt | |
[DEBUG] file stop-words_italian_1_it.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_1_it.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_italian_1_it.txt | |
[DEBUG] file stop-words_russian_1_ru.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_1_ru.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_russian_1_ru.txt | |
[DEBUG] file stop-words_greek_2_el.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_2_el.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_greek_2_el.txt | |
[DEBUG] file stop-words_finnish_2_fi.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_2_fi.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_finnish_2_fi.txt | |
[DEBUG] file stop-words_arabic_2_ar.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_2_ar.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_arabic_2_ar.txt | |
[DEBUG] file stop-words_bulgarian_1_bg.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_bulgarian_1_bg.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_bulgarian_1_bg.txt | |
[DEBUG] file stop-words_english_3_en.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_3_en.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_english_3_en.txt | |
[DEBUG] file stop-words_portugese_2_pt.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_2_pt.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_portugese_2_pt.txt | |
[DEBUG] file stop-words_latvian_1_lv.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_latvian_1_lv.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words-collection-2014-02-24/stop-words/stop-words_latvian_1_lv.txt | |
[DEBUG] file stop-words_spanish_es.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stop-words_spanish_es.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stop-words_spanish_es.txt | |
[DEBUG] file clinicaltrials200.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/clinicaltrials200.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/clinicaltrials200.txt | |
[DEBUG] file stopwords.txt has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/stopwords.txt to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/stopwords.txt | |
[DEBUG] file clinicaltrials.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/word/clinicaltrials.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/word/clinicaltrials.xml | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/graphchem/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/graphchem/args.xml | |
[DEBUG] file args.xml has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/sequence/args.xml to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/sequence/args.xml | |
[DEBUG] file ami.dot has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/org/xmlcml/ami2/plugins/ami.dot to /home/ross/workspace/clean/ami-plugin/target/classes/org/xmlcml/ami2/plugins/ami.dot | |
[DEBUG] file log4j.properties has a filtered file extension | |
[DEBUG] copy /home/ross/workspace/clean/ami-plugin/src/main/resources/log4j.properties to /home/ross/workspace/clean/ami-plugin/target/classes/log4j.properties | |
[INFO] | |
[INFO] --- maven-compiler-plugin:2.5.1:compile (default-compile) @ ami2 --- | |
[DEBUG] org.apache.maven.plugins:maven-compiler-plugin:jar:2.5.1: | |
[DEBUG] org.apache.maven:maven-plugin-api:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-artifact:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-core:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-settings:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-profile:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-model:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-repository-metadata:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-error-diagnostics:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-project:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-plugin-registry:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-plugin-descriptor:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-artifact-manager:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-monitor:jar:2.0.9:compile | |
[DEBUG] org.apache.maven:maven-toolchain:jar:1.0:compile | |
[DEBUG] org.codehaus.plexus:plexus-utils:jar:3.0:compile | |
[DEBUG] org.codehaus.plexus:plexus-compiler-api:jar:1.9.1:compile | |
[DEBUG] org.codehaus.plexus:plexus-compiler-manager:jar:1.9.1:compile | |
[DEBUG] org.codehaus.plexus:plexus-compiler-javac:jar:1.9.1:runtime | |
[DEBUG] org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile | |
[DEBUG] junit:junit:jar:3.8.1:compile | |
[DEBUG] classworlds:classworlds:jar:1.1-alpha-2:compile | |
[DEBUG] Created new class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1 | |
[DEBUG] Importing foreign packages into class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1 | |
[DEBUG] Imported: < maven.api | |
[DEBUG] Populating class realm plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1 | |
[DEBUG] Included: org.apache.maven.plugins:maven-compiler-plugin:jar:2.5.1 | |
[DEBUG] Included: org.codehaus.plexus:plexus-utils:jar:3.0 | |
[DEBUG] Included: org.codehaus.plexus:plexus-compiler-api:jar:1.9.1 | |
[DEBUG] Included: org.codehaus.plexus:plexus-compiler-manager:jar:1.9.1 | |
[DEBUG] Included: org.codehaus.plexus:plexus-compiler-javac:jar:1.9.1 | |
[DEBUG] Included: junit:junit:jar:3.8.1 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-api:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-artifact:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-core:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-settings:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-parameter-documenter:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-profile:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-model:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-repository-metadata:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-error-diagnostics:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-project:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-registry:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-plugin-descriptor:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-artifact-manager:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-monitor:jar:2.0.9 | |
[DEBUG] Excluded: org.apache.maven:maven-toolchain:jar:1.0 | |
[DEBUG] Excluded: org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1 | |
[DEBUG] Excluded: classworlds:classworlds:jar:1.1-alpha-2 | |
[DEBUG] Configuring mojo org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile from plugin realm ClassRealm[plugin>org.apache.maven.plugins:maven-compiler-plugin:2.5.1, parent: sun.misc.Launcher$AppClassLoader@24065c4] | |
[DEBUG] Configuring mojo 'org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile' with basic configurator --> | |
[DEBUG] (f) basedir = /home/ross/workspace/clean/ami-plugin | |
[DEBUG] (f) buildDirectory = /home/ross/workspace/clean/ami-plugin/target | |
[DEBUG] (f) classpathElements = [/home/ross/workspace/clean/ami-plugin/target/classes, /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar, /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar, /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar, /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar, /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar, /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar, /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar, /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar, /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar, /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar, /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar, /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar, /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar, /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar, /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar, /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar, /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar, /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar, /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar, /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar, /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar, /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar, /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar, /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar, /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar, /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar, /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar, /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar, /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar, /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar, /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar, /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar, /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar, /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar, /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar, /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar, /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar, /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar, /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar, /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar, /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar, /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar, /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar, /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar, /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar, /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar, /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar, /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar, /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar, /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar, /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar, /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar, /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar, /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar, /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar, /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar, /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar, /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar, /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar, /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar, /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar, /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar, /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar, /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar, /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar, /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar, /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar, /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar, /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar, /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar, /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar, /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar, /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar, /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar, /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar, /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar, /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar] | |
[DEBUG] (f) compileSourceRoots = [/home/ross/workspace/clean/ami-plugin/src/main/java] | |
[DEBUG] (f) compilerId = javac | |
[DEBUG] (f) debug = true | |
[DEBUG] (f) failOnError = true | |
[DEBUG] (f) fork = false | |
[DEBUG] (f) generatedSourcesDirectory = /home/ross/workspace/clean/ami-plugin/target/generated-sources/annotations | |
[DEBUG] (f) optimize = false | |
[DEBUG] (f) outputDirectory = /home/ross/workspace/clean/ami-plugin/target/classes | |
[DEBUG] (f) outputFileName = ami2-0.1-SNAPSHOT | |
[DEBUG] (f) projectArtifact = org.xml-cml:ami2:jar:0.1-SNAPSHOT | |
[DEBUG] (f) session = org.apache.maven.execution.MavenSession@29b6a261 | |
[DEBUG] (f) showDeprecation = false | |
[DEBUG] (f) showWarnings = false | |
[DEBUG] (f) source = 1.5 | |
[DEBUG] (f) staleMillis = 0 | |
[DEBUG] (f) target = 1.5 | |
[DEBUG] (f) verbose = false | |
[DEBUG] -- end configuration -- | |
[DEBUG] Using compiler 'javac'. | |
[DEBUG] Source directories: [/home/ross/workspace/clean/ami-plugin/src/main/java] | |
[DEBUG] Classpath: [/home/ross/workspace/clean/ami-plugin/target/classes | |
/home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar | |
/home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar | |
/home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar | |
/home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar | |
/home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar | |
/home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar | |
/home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar | |
/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar | |
/home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar | |
/home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar | |
/home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar | |
/home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar | |
/home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar | |
/home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar | |
/home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar | |
/home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar | |
/home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar | |
/home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar | |
/home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar | |
/home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar | |
/home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar | |
/home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar | |
/home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar | |
/home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar | |
/home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar | |
/home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar | |
/home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar | |
/home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar | |
/home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar | |
/home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar | |
/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar | |
/home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar | |
/home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar | |
/home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar | |
/home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar | |
/home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar | |
/home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar | |
/home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar | |
/home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar | |
/home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar | |
/home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar | |
/home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar | |
/home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar | |
/home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar | |
/home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar | |
/home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar | |
/home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar | |
/home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar | |
/home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar | |
/home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar | |
/home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar | |
/home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar | |
/home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar | |
/home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar | |
/home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar | |
/home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar | |
/home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar | |
/home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar | |
/home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar | |
/home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar | |
/home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar | |
/home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar | |
/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar | |
/home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar | |
/home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar | |
/home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar | |
/home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar | |
/home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar | |
/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar | |
/home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar | |
/home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar | |
/home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar | |
/home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar | |
/home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar | |
/home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar | |
/home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar | |
/home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar | |
/home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar | |
/home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar | |
/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar | |
/home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar | |
/home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar | |
/home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar | |
/home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar | |
/home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar] | |
[DEBUG] Output directory: /home/ross/workspace/clean/ami-plugin/target/classes | |
[DEBUG] CompilerReuseStrategy: reuseCreated | |
[DEBUG] Classpath: | |
[DEBUG] /home/ross/workspace/clean/ami-plugin/target/classes | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar | |
[DEBUG] /home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar | |
[DEBUG] /home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar | |
[DEBUG] /home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar | |
[DEBUG] /home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar | |
[DEBUG] /home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar | |
[DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar | |
[DEBUG] /home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar | |
[DEBUG] /home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar | |
[DEBUG] /home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar | |
[DEBUG] /home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar | |
[DEBUG] /home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar | |
[DEBUG] /home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar | |
[DEBUG] /home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar | |
[DEBUG] /home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar | |
[DEBUG] /home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar | |
[DEBUG] /home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar | |
[DEBUG] /home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar | |
[DEBUG] /home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar | |
[DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar | |
[DEBUG] /home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar | |
[DEBUG] /home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar | |
[DEBUG] /home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar | |
[DEBUG] /home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar | |
[DEBUG] /home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar | |
[DEBUG] /home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar | |
[DEBUG] /home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar | |
[DEBUG] /home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar | |
[DEBUG] /home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar | |
[DEBUG] /home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar | |
[DEBUG] /home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar | |
[DEBUG] /home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar | |
[DEBUG] /home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar | |
[DEBUG] /home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar | |
[DEBUG] /home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar | |
[DEBUG] /home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar | |
[DEBUG] /home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar | |
[DEBUG] /home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar | |
[DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar | |
[DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar | |
[DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar | |
[DEBUG] /home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar | |
[DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar | |
[DEBUG] /home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar | |
[DEBUG] /home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar | |
[DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar | |
[DEBUG] /home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar | |
[DEBUG] /home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar | |
[DEBUG] /home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar | |
[DEBUG] /home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar | |
[DEBUG] /home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar | |
[DEBUG] /home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar | |
[DEBUG] Source roots: | |
[DEBUG] /home/ross/workspace/clean/ami-plugin/src/main/java | |
[DEBUG] Command line options: | |
[DEBUG] -d /home/ross/workspace/clean/ami-plugin/target/classes -classpath /home/ross/workspace/clean/ami-plugin/target/classes:/home/ross/.m2/repository/org/xml-cml/norma/0.1-SNAPSHOT/norma-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/cmine/0.1-SNAPSHOT/cmine-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/html/0.2-SNAPSHOT/html-0.2-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/svg/0.2-SNAPSHOT/svg-0.2-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/euclid/1.1-SNAPSHOT/euclid-1.1-SNAPSHOT.jar:/home/ross/.m2/repository/log4j/log4j/1.2.16/log4j-1.2.16.jar:/home/ross/.m2/repository/org/apache/commons/commons-math/2.2/commons-math-2.2.jar:/home/ross/.m2/repository/joda-time/joda-time/1.6.2/joda-time-1.6.2.jar:/home/ross/.m2/repository/xom/xom/1.2.5/xom-1.2.5.jar:/home/ross/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar:/home/ross/.m2/repository/jtidy/jtidy/4aug2000r7-dev/jtidy-4aug2000r7-dev.jar:/home/ross/.m2/repository/org/ccil/cowan/tagsoup/tagsoup/1.2/tagsoup-1.2.jar:/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit/2.15/htmlunit-2.15.jar:/home/ross/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.jar:/home/ross/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.jar:/home/ross/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar:/home/ross/.m2/repository/org/apache/commons/commons-lang3/3.3.2/commons-lang3-3.3.2.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpclient/4.3.3/httpclient-4.3.3.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpcore/4.3.2/httpcore-4.3.2.jar:/home/ross/.m2/repository/org/apache/httpcomponents/httpmime/4.3.3/httpmime-4.3.3.jar:/home/ross/.m2/repository/commons-codec/commons-codec/1.9/commons-codec-1.9.jar:/home/ross/.m2/repository/net/sourceforge/htmlunit/htmlunit-core-js/2.15/htmlunit-core-js-2.15.jar:/home/ross/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar:/home/ross/.m2/repository/net/sourceforge/nekohtml/nekohtml/1.9.21/nekohtml-1.9.21.jar:/home/ross/.m2/repository/net/sourceforge/cssparser/cssparser/0.9.14/cssparser-0.9.14.jar:/home/ross/.m2/repository/org/w3c/css/sac/1.3/sac-1.3.jar:/home/ross/.m2/repository/commons-logging/commons-logging/1.1.3/commons-logging-1.1.3.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-websocket/8.1.15.v20140411/jetty-websocket-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-util/8.1.15.v20140411/jetty-util-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-io/8.1.15.v20140411/jetty-io-8.1.15.v20140411.jar:/home/ross/.m2/repository/org/eclipse/jetty/jetty-http/8.1.15.v20140411/jetty-http-8.1.15.v20140411.jar:/home/ross/.m2/repository/com/google/code/gson/gson/2.3.1/gson-2.3.1.jar:/home/ross/.m2/repository/net/sf/saxon/Saxon-HE/9.6.0-3/Saxon-HE-9.6.0-3.jar:/home/ross/.m2/repository/org/xml-cml/svg2xml/0.1-SNAPSHOT/svg2xml-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/pdf2svg/1.1-SNAPSHOT/pdf2svg-1.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/apache/pdfbox/pdfbox/1.8.8/pdfbox-1.8.8.jar:/home/ross/.m2/repository/org/apache/pdfbox/fontbox/1.8.8/fontbox-1.8.8.jar:/home/ross/.m2/repository/org/apache/pdfbox/jempbox/1.8.8/jempbox-1.8.8.jar:/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk16/1.46/bcprov-jdk16-1.46.jar:/home/ross/.m2/repository/org/jsoup/jsoup/1.8.2/jsoup-1.8.2.jar:/home/ross/.m2/repository/xmlunit/xmlunit/1.4/xmlunit-1.4.jar:/home/ross/.m2/repository/org/xml-cml/diagramanalyzer/0.1-SNAPSHOT/diagramanalyzer-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/javaocrnew/0.1-SNAPSHOT/javaocrnew-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/xml-cml/imageanalysis/0.1-SNAPSHOT/imageanalysis-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/org/boofcv/io/0.17/io-0.17.jar:/home/ross/.m2/repository/org/ddogleg/ddogleg/0.5/ddogleg-0.5.jar:/home/ross/.m2/repository/org/boofcv/ip/0.17/ip-0.17.jar:/home/ross/.m2/repository/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.jar:/home/ross/.m2/repository/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.jar:/home/ross/.m2/repository/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.jar:/home/ross/.m2/repository/org/georegression/georegression/0.6/georegression-0.6.jar:/home/ross/.m2/repository/com/googlecode/efficient-java-matrix-library/ejml/0.25/ejml-0.25.jar:/home/ross/.m2/repository/org/boofcv/feature/0.17/feature-0.17.jar:/home/ross/.m2/repository/org/boofcv/visualize/0.17/visualize-0.17.jar:/home/ross/.m2/repository/org/boofcv/recognition/0.17/recognition-0.17.jar:/home/ross/.m2/repository/org/boofcv/sfm/0.17/sfm-0.17.jar:/home/ross/.m2/repository/org/boofcv/calibration/0.17/calibration-0.17.jar:/home/ross/.m2/repository/org/boofcv/geo/0.17/geo-0.17.jar:/home/ross/.m2/repository/org/imgscalr/imgscalr-lib/4.2/imgscalr-lib-4.2.jar:/home/ross/.m2/repository/org/xml-cml/svgbuilder/0.1-SNAPSHOT/svgbuilder-0.1-SNAPSHOT.jar:/home/ross/.m2/repository/com/google/code/findbugs/jsr305/2.0.2/jsr305-2.0.2.jar:/home/ross/.m2/repository/org/apache/lucene/lucene-core/4.10.3/lucene-core-4.10.3.jar:/home/ross/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.10.3/lucene-analyzers-common-4.10.3.jar:/home/ross/.m2/repository/com/google/guava/guava/18.0/guava-18.0.jar:/home/ross/.m2/repository/blogspot/software-and-algorithms/stern-library/0.1/stern-library-0.1.jar:/home/ross/.m2/repository/org/vafer/jdeb/1.3/jdeb-1.3.jar:/home/ross/.m2/repository/commons-io/commons-io/2.4/commons-io-2.4.jar:/home/ross/.m2/repository/org/apache/commons/commons-compress/1.7/commons-compress-1.7.jar:/home/ross/.m2/repository/org/tukaani/xz/1.4/xz-1.4.jar:/home/ross/.m2/repository/org/apache/maven/maven-core/3.2.2/maven-core-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-model/3.2.2/maven-model-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-settings/3.2.2/maven-settings-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-settings-builder/3.2.2/maven-settings-builder-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-repository-metadata/3.2.2/maven-repository-metadata-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-artifact/3.2.2/maven-artifact-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-model-builder/3.2.2/maven-model-builder-3.2.2.jar:/home/ross/.m2/repository/org/apache/maven/maven-aether-provider/3.2.2/maven-aether-provider-3.2.2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-spi/0.9.0.M2/aether-spi-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-impl/0.9.0.M2/aether-impl-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-api/0.9.0.M2/aether-api-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/aether/aether-util/0.9.0.M2/aether-util-0.9.0.M2.jar:/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.plexus/0.0.0.M5/org.eclipse.sisu.plexus-0.0.0.M5.jar:/home/ross/.m2/repository/javax/enterprise/cdi-api/1.0/cdi-api-1.0.jar:/home/ross/.m2/repository/javax/annotation/jsr250-api/1.0/jsr250-api-1.0.jar:/home/ross/.m2/repository/javax/inject/javax.inject/1/javax.inject-1.jar:/home/ross/.m2/repository/org/sonatype/sisu/sisu-guice/3.1.0/sisu-guice-3.1.0-no_aop.jar:/home/ross/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar:/home/ross/.m2/repository/org/eclipse/sisu/org.eclipse.sisu.inject/0.0.0.M5/org.eclipse.sisu.inject-0.0.0.M5.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-interpolation/1.19/plexus-interpolation-1.19.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-utils/3.0.17/plexus-utils-3.0.17.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-classworlds/2.5.1/plexus-classworlds-2.5.1.jar:/home/ross/.m2/repository/org/codehaus/plexus/plexus-component-annotations/1.5.5/plexus-component-annotations-1.5.5.jar:/home/ross/.m2/repository/org/sonatype/plexus/plexus-sec-dispatcher/1.3/plexus-sec-dispatcher-1.3.jar:/home/ross/.m2/repository/org/sonatype/plexus/plexus-cipher/1.4/plexus-cipher-1.4.jar:/home/ross/.m2/repository/org/apache/maven/maven-plugin-api/3.2.2/maven-plugin-api-3.2.2.jar:/home/ross/.m2/repository/org/apache/ant/ant/1.9.3/ant-1.9.3.jar:/home/ross/.m2/repository/org/apache/ant/ant-launcher/1.9.3/ant-launcher-1.9.3.jar:/home/ross/.m2/repository/org/bouncycastle/bcpg-jdk15on/1.51/bcpg-jdk15on-1.51.jar:/home/ross/.m2/repository/org/bouncycastle/bcprov-jdk15on/1.51/bcprov-jdk15on-1.51.jar:/home/ross/.m2/repository/com/jayway/jsonpath/json-path/2.0.0/json-path-2.0.0.jar:/home/ross/.m2/repository/org/slf4j/slf4j-api/1.7.10/slf4j-api-1.7.10.jar:/home/ross/.m2/repository/net/minidev/json-smart/2.1.1/json-smart-2.1.1.jar:/home/ross/.m2/repository/net/minidev/asm/1.0.2/asm-1.0.2.jar:/home/ross/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar: -sourcepath /home/ross/workspace/clean/ami-plugin/src/main/java: /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlNode.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexSearcher.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequenceResultElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneResultElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloResultElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordPlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlOtus.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloResultsElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/CompoundRegexList.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneResultsElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlTrees.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesPlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreePlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordResultsElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/ENALookup.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/NamedGroupList.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/IdentifierSearcher.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/package-info.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexPlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordResultsElementList.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlTree.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/package-info.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyResultsElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/RunPhylo.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/LinneanNamer.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordSetWrapper.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/package-info.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummySearcher.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/simple/SimpleArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequenceArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMIPlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlNEXML.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/IdentifierArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMIArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/simple/SimplePlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/XPathProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/ScientificNameList.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyResultElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/WikipediaLookup.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesResultsElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/MatcherResult.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlOtu.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GenePlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesSearcher.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/NamedPattern.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/TaxdumpLookup.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/IdentifierPlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/LineContainer.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/package-info.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexComponent.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/SVGXTree.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/CompoundRegex.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/GBIFLookup.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlEdge.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/identifier/package-info.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/NameMultimap.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/GenbankLookup.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloConstants.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMISearcher.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/PubmedLookup.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/package-info.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlFactory.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/NamedGroup.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/NexmlElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/dummy/DummyPlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/gene/GeneSearcher.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordCollectionFactory.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/word/WordResultElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/SpeciesResultElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeSVGAnalyzer.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/nexml/package-info.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequenceSearcher.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/SVGXTreeNode.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/AMIResultElement.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/regex/RegexArgProcessor.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/sequence/SequencePlugin.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/SVGXTreeEdge.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/lookups/GenbankResultAnalyzer.java /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/species/LinneanName.java -g -nowarn -target 1.5 -source 1.5 | |
[WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent! | |
[INFO] Compiling 84 source files to /home/ross/workspace/clean/ami-plugin/target/classes | |
[INFO] ------------------------------------------------------------- | |
[ERROR] COMPILATION ERROR : | |
[INFO] ------------------------------------------------------------- | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[141,2] error: cannot find symbol | |
[ERROR] symbol: method ensureInitLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[208,25] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[253,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[255,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[263,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[265,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[277,4] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[280,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[287,2] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[290,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[298,2] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[312,5] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[314,5] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[759,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[769,4] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[772,4] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[791,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[792,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
location: class PhyloTreeArgProcessor | |
/home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[794,4] error: cannot find symbol | |
[INFO] 19 errors | |
[INFO] ------------------------------------------------------------- | |
[INFO] ------------------------------------------------------------------------ | |
[INFO] BUILD FAILURE | |
[INFO] ------------------------------------------------------------------------ | |
[INFO] Total time: 6.753s | |
[INFO] Finished at: Fri Aug 21 22:31:52 BST 2015 | |
[INFO] Final Memory: 22M/217M | |
[INFO] ------------------------------------------------------------------------ | |
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project ami2: Compilation failure: Compilation failure: | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[141,2] error: cannot find symbol | |
[ERROR] symbol: method ensureInitLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[208,25] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[253,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[255,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[263,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[265,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[277,4] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[280,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[287,2] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[290,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[298,2] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[312,5] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[314,5] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[759,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[769,4] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[772,4] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[791,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[792,3] error: cannot find symbol | |
[ERROR] symbol: method ensureCTreeLog() | |
[ERROR] location: class PhyloTreeArgProcessor | |
[ERROR] /home/ross/workspace/clean/ami-plugin/src/main/java/org/xmlcml/ami2/plugins/phylotree/PhyloTreeArgProcessor.java:[794,4] error: cannot find symbol | |
[ERROR] -> [Help 1] | |
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project ami2: Compilation failure | |
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) | |
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) | |
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) | |
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) | |
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) | |
at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) | |
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) | |
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320) | |
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) | |
at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537) | |
at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196) | |
at org.apache.maven.cli.MavenCli.main(MavenCli.java:141) | |
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
at java.lang.reflect.Method.invoke(Method.java:606) | |
at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:289) | |
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:229) | |
at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:415) | |
at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:356) | |
Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure | |
at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:729) | |
at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) | |
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) | |
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) | |
... 19 more | |
[ERROR] | |
[ERROR] | |
[ERROR] For more information about the errors and possible solutions, please read the following articles: | |
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment