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rsangole/install_packages.R

Last active November 6, 2018 14:21
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R package install issues - MS HDI
Raw
install_packages.R
library("dplyr")
pkgs_wanted <- c(
"anomalize",
"AnomalyDetection",
"arules",
"assertive",
"assertthat",
"astsa",
"bayesm",
"beanplot",
"brew",
"broom",
"caret",
"clipr",
"corrplot",
"covr",
"crayon",
"cronR",
"curl",
"DALEX",
"data.table",
"DBI",
"dbplyr",
"devtools",
"doMC",
"doParallel",
"doSNOW",
"dplyr",
"drake",
"e1071",
"entropy",
"extraDistr",
"fastAdaboost",
"fasttime",
"feather",
"forcats",
"foreach",
"forecast",
"foreign",
"formatR",
"fs",
"FSelector",
"gbm",
"gdata",
"geosphere",
"ggExtra",
"ggplot2",
"ggplus",
"ggpubr",
"ggrepel",
"ggsci",
"ggsignif",
"git2r",
"glmnet",
"glue",
"gmodels",
"gplots",
"graphics",
"grDevices",
"grid",
"gridBase",
"gridExtra",
"gtable",
"gtools",
"haven",
"here",
"hexbin",
"highr",
"hms",
"infer",
"infotheo",
"inline",
"iterators",
"itertools",
"jadd",
"janitor",
"jsonlite",
"KernSmooth",
"klaR",
"knitr",
"labeling",
"later",
"lattice",
"latticeExtra",
"lazyeval",
"lintr",
"lme4",
"lmtest",
"lubridate",
"magrittr",
"markdown",
"Metrics",
"mgcv",
"mice",
"microbenchmark",
"mime",
"miniCRAN",
"missForest",
"MLmetrics",
"mnormt",
"ModelMetrics",
"modelr",
"modeltools",
"party",
"plotly",
"plyr",
"png",
"pracma",
"praise",
"prefixer",
"prettyunits",
"pROC",
"processx",
"profvis",
"ProjectTemplate",
"promises",
"prophet",
"proxy",
"psych",
"purrr",
"qcc",
"quadprog",
"quantmod",
"quantreg",
"R.utils",
"R.utils",
"R6",
"randomForest",
"randomForestSRC",
"readr",
"reshape2",
"reticulate",
"rJava",
"RJDBC",
"rlang",
"rmarkdown",
"robfilter",
"robustbase",
"ROCR",
"roxygen2",
"rpart",
"rpart.plot",
"rstudioapi",
"Rtsne",
"RUnit",
"rvest",
"RWeka",
"sampling",
"segmented",
"shiny",
"shinyWidgets",
"stringr",
"strucchange",
"sweep",
"testthat",
"tidyverse",
"timeDate",
"timetk",
"tinytex",
"tools",
"tsne",
"utils",
"xts",
"yardstick",
"zeallot",
"zoo"
)
system_ip <- installed.packages() %>%
as_tibble() %>% arrange(Package)
# Packages which already exist
pkgs_wanted[pkgs_wanted %in% system_ip$Package]
# Packages which do not yet exist
install_these_now <- pkgs_wanted[!pkgs_wanted %in% system_ip$Package]
install_these_now
# Try the first 10 packages
install.packages(install_these_now[1:10])
install.packages("zoo") # Works well, zoo is now installed.
install.packages("xts") # xts needs zoo, but fails because "zoo not found". Odd.
install.packages("ROCR") # Fails since requires "gplots".
install.packages("gplots") # Succeeds.
install.packages("ROCR") # Trying again, but still fails because "gplots" not found.
Raw
log_line_181.out
> install.packages(install_these_now[1:10])
Installing packages into ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
Warning in install.packages :
packages ‘anomalize’, ‘AnomalyDetection’ are not available (for R version 3.4.3)
also installing the dependencies ‘numDeriv’, ‘colorspace’, ‘lava’, ‘kernlab’, ‘CVST’, ‘DEoptimR’, ‘RColorBrewer’, ‘dichromat’, ‘munsell’, ‘labeling’, ‘viridisLite’, ‘prodlim’, ‘DRR’, ‘robustbase’, ‘sfsmisc’, ‘evaluate’, ‘highr’, ‘markdown’, ‘gtable’, ‘scales’, ‘ipred’, ‘dimRed’, ‘lubridate’, ‘timeDate’, ‘ddalpha’, ‘gower’, ‘RcppRoll’, ‘assertive.base’, ‘assertive.properties’, ‘assertive.types’, ‘assertive.numbers’, ‘assertive.strings’, ‘assertive.datetimes’, ‘assertive.files’, ‘assertive.sets’, ‘assertive.matrices’, ‘assertive.models’, ‘assertive.data’, ‘assertive.data.uk’, ‘assertive.data.us’, ‘assertive.reflection’, ‘assertive.code’, ‘knitr’, ‘RcppArmadillo’, ‘ggplot2’, ‘ModelMetrics’, ‘recipes’
% Total % Received % Xferd Average Speed Time Time Time Current
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27 76303 27 20779 0 0 36172 0 0:00:02 100 76303 100 76303 0 0 117k 0 --:-
% Total % Received % Xferd Average Speed Time Time Time Current
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100 286k 100 286k 0 0 359k 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 100 822k 100 822k 0 0 910k 0 --:--:-- --:--:-- --:--:-- 909k
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- 100 1142k 100 1142k 0 0 1087k 0 0:00:01 0:00:01 --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-100 12452 100 12452 0 0 20731 0 --
% Total % Received % Xferd Average Speed Time Time Time Current
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5 35401 5 2092 0 0 4604 0 0:00:07 --:--:-- 0:00:07 4597
% Total % Received % Xferd Average Speed Time Time Time Current
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100 11532 100 11532 0 0 23397 0 --:--:-- --:--:-- -:-- --:--:-- 23439
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0100 84320 100 84320 0 0 138k 0 --:--:-- --:--:-- --:--:-- 138k
% Total % Received % Xferd Average Speed Time Time Time Current
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100 97244 100 97244 0 0 159k 0 --:--:-- --:--:-- --:--:-- -:--:-- --:--:-- 160k
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- 100 10722 100 10722 0 0 25099 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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100 48073 100 48073 0 0 93186 0 --:-- 0 --:--:-- --:--:-- --:--:-- 93345
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--100 121k 100 121k 0 0 203k 0 --:--:-- --:--:-- --:--
% Total % Received % Xferd Average Speed Time Time Time Current
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3 114k 3 3556 0 0 7697 0 0:00:15 --:--:-100 114k 100 114k 0 0 178k 0 --:--:-- --:--:-- --:--:-- 178k
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
5 3397k 5 184k 0 0 252k 0 0:00:13 --:--:-- 0:00:13 100 3397k 100 3397k 0 0 2354k 0 0:00:01 0:00:01
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:100 164k 100 164k 0 0 243k 0 --:--:-- --:--:-- --:--
% Total % Received % Xferd Average Speed Time Time Time Current
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100 22177 100 22177 0 0 43809 0 --:--:-- --:--:-- --:--:-- :--:-- --:--:-- 43828
% Total % Received % Xferd Average Speed Time Time Time Current
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100 17294 100 17294 0 0 37604 0 --:--:----:-- --:--:-- --:--:-- 37677
% Total % Received % Xferd Average Speed Time Time Time Current
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25 80583 25 20779 0 0 39063 0 0:00:0100 80583 100 80583 0 0 132k 0 --:--:-2 --:--:-- 0:00:02 39058
% Total % Received % Xferd Average Speed Time Time Time Current
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100 24157 1 0 0 00 24157 0 0 53765 0 --:--:-- --:--:-- --:--:-- 53801
% Total % Received % Xferd Average Speed Time Time Time Current
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5 59867 5 3558 0 100 59867 100 59867 0 0 110k 0 --:--:-- --:--:-- --:--:-- 110k
% Total % Received % Xferd Average Speed Time Time Time Current
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100 182k 100 182k 0 0 276k 0 --:--:-- --:--:-- --:--:-- 27 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--100 70299 100 70299 0
% Total % Received % Xferd Average Speed Time Time Time Current
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100 389k 100 389k 0 0 501k 0 --:--:-- --:--:-- --:--:-- 500k
% Total % Received % Xferd Average Speed Time Time Time Current
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36 307k 36 111k 0 0 159k 0 100 307k 100 307k 0 0 376k 0 --:--:-- --:--:-- --:--:-- 376k
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100 530k 100 530k 0 0 572k 0 --:--:-- --:--:-- --:--:-- 572k
% Total % Received % Xferd Average Speed Time Time Time Current
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100 17393 100 17393 0 0 41080 0 --: 0 --:--:-- --:--:-- --:--:-- 41118
% Total % Received % Xferd Average Speed Time Time Time Current
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100 13680 100 13680 0 0 32520 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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100 41160 100 41160 0 0 81085 0 --:--:-- --:--:-- --:--:-- 81 0
% Total % Received % Xferd Average Speed Time Time Time Current
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100 19994 100 19994 0 0 38695 0 --:--:-- --:--:-- --:--:-- 38673
% Total % Received % Xferd Average Speed Time Time Time Current
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100 24867 100 24867 0 0 48757 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:-100 13933 100 13933 0 0 30909
% Total % Received % Xferd Average Speed Time Time Time Current
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100 13466 100 13466 0 0 323 0 0 61 0 --:--:-- --:--:-- --:--:-- 32370
% Total % Received % Xferd Average Speed Time Time Time Current
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31 5949 31 1877 0 0 4352 0 0:00:01 --:--:-100 5949 100 5949 0 0 13788 0 --:--:-- --:--:-- --:--:-- 13770
% Total % Received % Xferd Average Speed Time Time Time Current
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100 12408 100 12408 0 0 28846 0 --:--:-- --:--:-- --:--:-- 28855
% Total % Received % Xferd Average Speed Time Time Time Current
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100 5149 100 5149 0 0 11453 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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100 5376 100 5376 0 0 12844 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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100 4204 100 4204 0 0 10094 0 --:--:-- --:--:-- --:--:-- 10105
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 100 11778 100 11778 0 0 28181 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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100 11451 100 11451 0 0 26914 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --100 6674 100 6674 0 0 15989 0 --:--:-- --:--:-- --:--:-- 15966
% Total % Received % Xferd Average Speed Time Time Time Current
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100 25749 100 25749 0 0 0 0 49778 0 --:--:-- --:--:-- --:--:-- 49804
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:-100 10215 100 10215 0 0 24251 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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22 634k 22 145k 0 0 203k 0 0:00:03100 634k 100 634k 0 0 709k 0 --:--:-- --:--:-- --:--:-- 708k
% Total % Received % Xferd Average Speed Time Time Time Current
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23 1287k 23 296k 0 0 368k 0 0:00:03 --:--:-- 0:00:03 368k
% Total % Received % Xferd Average Speed Time Time Time Current
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14 2161k 14 305k 0 0 399k 0 0:00:05 --:-100 2161k 100 2161k 0 0 2016k 0 0:00:01 0:00:01 0:00:05 399k
% Total % Received % Xferd Average Speed Time Time Time Current
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100 11615 100 11615 0 0 27375 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:100 550k 100 550k 0 0 672k 0 --:--:-- --:--:-- --:--:-- 672k
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:--100 1327k 100 1327k 0 0 1361k 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:100 938k 100 938k 0 0 1003k 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 100 555k 100 555k 0 0 693k 0 --:--:-- --:--:-- --:--:-- 0
% Total % Received % Xferd Average Speed Time Time Time Current
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0 2334k 0 20776 0 0 39632 0 0:01:00 --100 2334k 100 2334k 0 0 1871k 0 0:00:01 0:00:01 --:--:-- 1871k
% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:100 375k 100 375k 0 0 483k 0 --:--:-- --:--:-- --:--:-- 483k
% Total % Received % Xferd Average Speed Time Time Time Current
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3 83315 3 2716 0 0 5100 83315 100 83315 0 0 136k 0 --:--:-- --:--:-- --:--:-- 136k
% Total % Received % Xferd Average Speed Time Time Time Current
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3 4615k 3 184k 0 0 22100 4615k 100 4615k 0 0 3153k 0 0:00:01 0:00:01 --:--:-- 3154k
% Total % Received % Xferd Average Speed Time Time Time Current
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100 11104 100 11104 0 0 25900 0 --:--:-- --:--:-- --:--:-- 25883
* installing *source* package ‘numDeriv’ ...
** package ‘numDeriv’ successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (numDeriv)
* installing *source* package ‘colorspace’ ...
** package ‘colorspace’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c colorspace.c -o colorspace.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o colorspace.so colorspace.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/colorspace/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (colorspace)
* installing *source* package ‘kernlab’ ...
** package ‘kernlab’ successfully unpacked and MD5 sums checked
** libs
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c brweight.cpp -o brweight.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c ctable.cpp -o ctable.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cweight.cpp -o cweight.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dbreakpt.c -o dbreakpt.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dgpnrm.c -o dgpnrm.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dgpstep.c -o dgpstep.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dprecond.c -o dprecond.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dprsrch.c -o dprsrch.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dspcg.c -o dspcg.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dtron.c -o dtron.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dtrpcg.c -o dtrpcg.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dtrqsol.c -o dtrqsol.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c esa.cpp -o esa.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c expdecayweight.cpp -o expdecayweight.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c inductionsort.cpp -o inductionsort.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c kspectrumweight.cpp -o kspectrumweight.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c lcp.cpp -o lcp.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c misc.c -o misc.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c msufsort.cpp -o msufsort.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c solvebqp.c -o solvebqp.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c stringk.c -o stringk.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c stringkernel.cpp -o stringkernel.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c svm.cpp -o svm.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c wkasailcp.cpp -o wkasailcp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c wmsufsort.cpp -o wmsufsort.o
g++ -shared -L/usr/local/lib64 -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRlapack -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRblas -lgfortran -lm -lquadmath
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/kernlab/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (kernlab)
* installing *source* package ‘DEoptimR’ ...
** package ‘DEoptimR’ successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (DEoptimR)
* installing *source* package ‘RColorBrewer’ ...
** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RColorBrewer)
* installing *source* package ‘dichromat’ ...
** package ‘dichromat’ successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (dichromat)
* installing *source* package ‘labeling’ ...
** package ‘labeling’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (labeling)
* installing *source* package ‘viridisLite’ ...
** package ‘viridisLite’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded
* DONE (viridisLite)
* installing *source* package ‘sfsmisc’ ...
** package ‘sfsmisc’ successfully unpacked and MD5 sums checked
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (sfsmisc)
* installing *source* package ‘evaluate’ ...
** package ‘evaluate’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (evaluate)
* installing *source* package ‘highr’ ...
** package ‘highr’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (highr)
* installing *source* package ‘markdown’ ...
** package ‘markdown’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c Rbase64.c -o Rbase64.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c Rinit.c -o Rinit.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c Rmarkdown.c -o Rmarkdown.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c autolink.c -o autolink.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c buffer.c -o buffer.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c houdini_href_e.c -o houdini_href_e.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c houdini_html_e.c -o houdini_html_e.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c html.c -o html.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c html_smartypants.c -o html_smartypants.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c markdown.c -o markdown.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c stack.c -o stack.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/markdown/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (markdown)
* installing *source* package ‘gtable’ ...
** package ‘gtable’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (gtable)
* installing *source* package ‘lubridate’ ...
** package ‘lubridate’ successfully unpacked and MD5 sums checked
** libs
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c RcppExports.cpp -o RcppExports.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c datetime.c -o datetime.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c period.c -o period.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c tparse.c -o tparse.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c update.cpp -o update.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c utils.c -o utils.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cctz/src/time_zone_fixed.cc -o cctz/src/time_zone_fixed.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cctz/src/time_zone_if.cc -o cctz/src/time_zone_if.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cctz/src/time_zone_impl.cc -o cctz/src/time_zone_impl.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cctz/src/time_zone_info.cc -o cctz/src/time_zone_info.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cctz/src/time_zone_libc.cc -o cctz/src/time_zone_libc.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cctz/src/time_zone_lookup.cc -o cctz/src/time_zone_lookup.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I. -I./cctz/include/ -I./cctz/src/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cctz/src/time_zone_posix.cc -o cctz/src/time_zone_posix.o
ar rcs libcctz.a ./cctz/src/time_zone_fixed.o ./cctz/src/time_zone_if.o ./cctz/src/time_zone_impl.o ./cctz/src/time_zone_info.o ./cctz/src/time_zone_libc.o ./cctz/src/time_zone_lookup.o ./cctz/src/time_zone_posix.o
g++ -std=gnu++11 -shared -L/usr/local/lib64 -o lubridate.so RcppExports.o datetime.o period.o tparse.o update.o utils.o -L. -lcctz
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/lubridate/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (lubridate)
* installing *source* package ‘timeDate’ ...
** package ‘timeDate’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘sample’ from package ‘base’ in package ‘timeDate’
Creating a generic function for ‘getDataPart’ from package ‘methods’ in package ‘timeDate’
Creating a generic function for ‘abline’ from package ‘graphics’ in package ‘timeDate’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (timeDate)
* installing *source* package ‘gower’ ...
** package ‘gower’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fopenmp -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c R_register_native.c -o R_register_native.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fopenmp -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c gower.c -o gower.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o gower.so R_register_native.o gower.o -fopenmp
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/gower/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gower)
* installing *source* package ‘RcppRoll’ ...
** package ‘RcppRoll’ successfully unpacked and MD5 sums checked
** libs
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rollit.cpp -o rollit.o
g++ -shared -L/usr/local/lib64 -o RcppRoll.so RcppExports.o rollit.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppRoll/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RcppRoll)
* installing *source* package ‘assertive.base’ ...
** package ‘assertive.base’ successfully unpacked and MD5 sums checked
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.base)
* installing *source* package ‘RcppArmadillo’ ...
** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking whether g++ version is sufficient... almost
configure: WARNING: Compiler self-identifies as being compliant with GNUC extensions but is not g++.
checking LAPACK_LIBS... fallback LAPACK from R 3.3.0 or later used
checking for macOS... not found as on Linux
configure: creating ./config.status
config.status: creating inst/include/RcppArmadilloConfigGenerated.h
config.status: creating src/Makevars
** libs
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -I../inst/include -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -I../inst/include -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -I../inst/include -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c fastLm.cpp -o fastLm.o
g++ -std=gnu++11 -shared -L/usr/local/lib64 -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRlapack -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRblas -lgfortran -lm -lquadmath
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RcppArmadillo)
* installing *source* package ‘ModelMetrics’ ...
** package ‘ModelMetrics’ successfully unpacked and MD5 sums checked
** libs
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c auc_.cpp -o auc_.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c confusionMatrix_.cpp -o confusionMatrix_.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c error.cpp -o error.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c logLoss_.cpp -o logLoss_.o
g++ -shared -L/usr/local/lib64 -o ModelMetrics.so RcppExports.o auc_.o confusionMatrix_.o error.o logLoss_.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/ModelMetrics/libs
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ModelMetrics)
* installing *source* package ‘arules’ ...
** package ‘arules’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c arrayIndex.c -o arrayIndex.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c bitmat.c -o bitmat.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dll.c -o dll.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c issubset.c -o issubset.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c istree.c -o istree.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c matrix.c -o matrix.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c ptree.c -o ptree.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rapriori.c -o rapriori.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c reclat.c -o reclat.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c similarity.c -o similarity.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c symtab.c -o symtab.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c tfscan.c -o tfscan.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c tid_count.c -o tid_count.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c tract.c -o tract.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c vecops.c -o vecops.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -DNDEBUG -DNIMAPFN -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c warm.c -o warm.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o arules.so arrayIndex.o bitmat.o dll.o issubset.o istree.o matrix.o ptree.o rapriori.o reclat.o similarity.o symtab.o tfscan.o tid_count.o tract.o vecops.o warm.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/arules/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘abbreviate’ in package ‘arules’
Creating a new generic function for ‘write’ in package ‘arules’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (arules)
* installing *source* package ‘astsa’ ...
** package ‘astsa’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (astsa)
* installing *source* package ‘beanplot’ ...
** package ‘beanplot’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (beanplot)
* installing *source* package ‘brew’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (brew)
* installing *source* package ‘clipr’ ...
** package ‘clipr’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (clipr)
* installing *source* package ‘lava’ ...
** package ‘lava’ successfully unpacked and MD5 sums checked
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (lava)
* installing *source* package ‘CVST’ ...
** package ‘CVST’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error : package ‘kernlab’ required by ‘CVST’ could not be found
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/CVST’
Warning in install.packages :
installation of package ‘CVST’ had non-zero exit status
* installing *source* package ‘munsell’ ...
** package ‘munsell’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (munsell)
* installing *source* package ‘robustbase’ ...
** package ‘robustbase’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c R-rng4ftn.c -o R-rng4ftn.o
gfortran -fpic -g -O2 -c eigen.f -o eigen.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c init.c -o init.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c lmrob.c -o lmrob.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c mc.c -o mc.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c monitor.c -o monitor.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c qn_sn.c -o qn_sn.o
gfortran -fpic -g -O2 -c rf-common.f -o rf-common.o
gfortran -fpic -g -O2 -c rffastmcd.f -o rffastmcd.o
gfortran -fpic -g -O2 -c rfltsreg.f -o rfltsreg.o
gfortran -fpic -g -O2 -c rllarsbi.f -o rllarsbi.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rob-utils.c -o rob-utils.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rowMedians.c -o rowMedians.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c wgt_himed.c -o wgt_himed.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o robustbase.so R-rng4ftn.o eigen.o init.o lmrob.o mc.o monitor.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o rllarsbi.o rob-utils.o rowMedians.o wgt_himed.o -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRlapack -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/robustbase/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function from function ‘chgDefaults’ in package ‘robustbase’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (robustbase)
* installing *source* package ‘assertive.properties’ ...
** package ‘assertive.properties’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.properties)
* installing *source* package ‘assertive.numbers’ ...
** package ‘assertive.numbers’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.numbers)
* installing *source* package ‘assertive.sets’ ...
** package ‘assertive.sets’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.sets)
* installing *source* package ‘assertive.matrices’ ...
** package ‘assertive.matrices’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.matrices)
* installing *source* package ‘assertive.models’ ...
** package ‘assertive.models’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.models)
* installing *source* package ‘assertive.reflection’ ...
** package ‘assertive.reflection’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.reflection)
* installing *source* package ‘knitr’ ...
** package ‘knitr’ successfully unpacked and MD5 sums checked
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (knitr)
* installing *source* package ‘bayesm’ ...
** package ‘bayesm’ successfully unpacked and MD5 sums checked
** libs
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c bayesBLP_rcpp_loop.cpp -o bayesBLP_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c breg_rcpp.cpp -o breg_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c cgetC_rcpp.cpp -o cgetC_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c clusterMix_rcpp_loop.cpp -o clusterMix_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c functionTiming.cpp -o functionTiming.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c ghkvec_rcpp.cpp -o ghkvec_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c llmnl_rcpp.cpp -o llmnl_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c lndIChisq_rcpp.cpp -o lndIChisq_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c lndIWishart_rcpp.cpp -o lndIWishart_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c lndMvn_rcpp.cpp -o lndMvn_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c lndMvst_rcpp.cpp -o lndMvst_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rDPGibbs_rcpp_loop.cpp -o rDPGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rbprobitGibbs_rcpp_loop.cpp -o rbprobitGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rdirichlet_rcpp.cpp -o rdirichlet_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rhierLinearMixture_rcpp_loop.cpp -o rhierLinearMixture_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rhierLinearModel_rcpp_loop.cpp -o rhierLinearModel_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rhierMnlDP_rcpp_loop.cpp -o rhierMnlDP_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rhierMnlRwMixture_rcpp_loop.cpp -o rhierMnlRwMixture_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rhierNegbinRw_rcpp_loop.cpp -o rhierNegbinRw_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rivDP_rcpp_loop.cpp -o rivDP_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rivgibbs_rcpp_loop.cpp -o rivgibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rmixGibbs_rcpp.cpp -o rmixGibbs_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rmixture_rcpp.cpp -o rmixture_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rmnlIndepMetrop_rcpp_loop.cpp -o rmnlIndepMetrop_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rmnpGibbs_rcpp_loop.cpp -o rmnpGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rmultireg_rcpp.cpp -o rmultireg_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rmvpGibbs_rcpp_loop.cpp -o rmvpGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rmvst_rcpp.cpp -o rmvst_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rnegbinRw_rcpp_loop.cpp -o rnegbinRw_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rnmixGibbs_rcpp_loop.cpp -o rnmixGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rordprobitGibbs_rcpp_loop.cpp -o rordprobitGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rscaleUsage_rcpp_loop.cpp -o rscaleUsage_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rsurGibbs_rcpp_loop.cpp -o rsurGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rtrun_rcpp.cpp -o rtrun_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c runiregGibbs_rcpp_loop.cpp -o runiregGibbs_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c runireg_rcpp_loop.cpp -o runireg_rcpp_loop.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rwishart_rcpp.cpp -o rwishart_rcpp.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c trunNorm.cpp -o trunNorm.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include/ -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/RcppArmadillo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c utilityFunctions.cpp -o utilityFunctions.o
g++ -shared -L/usr/local/lib64 -o bayesm.so RcppExports.o bayesBLP_rcpp_loop.o breg_rcpp.o cgetC_rcpp.o clusterMix_rcpp_loop.o functionTiming.o ghkvec_rcpp.o llmnl_rcpp.o lndIChisq_rcpp.o lndIWishart_rcpp.o lndMvn_rcpp.o lndMvst_rcpp.o rDPGibbs_rcpp_loop.o rbprobitGibbs_rcpp_loop.o rdirichlet_rcpp.o rhierLinearMixture_rcpp_loop.o rhierLinearModel_rcpp_loop.o rhierMnlDP_rcpp_loop.o rhierMnlRwMixture_rcpp_loop.o rhierNegbinRw_rcpp_loop.o rivDP_rcpp_loop.o rivgibbs_rcpp_loop.o rmixGibbs_rcpp.o rmixture_rcpp.o rmnlIndepMetrop_rcpp_loop.o rmnpGibbs_rcpp_loop.o rmultireg_rcpp.o rmvpGibbs_rcpp_loop.o rmvst_rcpp.o rnegbinRw_rcpp_loop.o rnmixGibbs_rcpp_loop.o rordprobitGibbs_rcpp_loop.o rscaleUsage_rcpp_loop.o rsurGibbs_rcpp_loop.o rtrun_rcpp.o runiregGibbs_rcpp_loop.o runireg_rcpp_loop.o rwishart_rcpp.o trunNorm.o utilityFunctions.o -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRlapack -L/opt/microsoft/mlserver/9.3.0/runtime/R/lib -lRblas -lgfortran -lm -lquadmath
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/bayesm/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (bayesm)
* installing *source* package ‘prodlim’ ...
** package ‘prodlim’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c GMLE.c -o GMLE.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c IntIndex.c -o IntIndex.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c declareRoutines.c -o declareRoutines.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c icens_prodlim.c -o icens_prodlim.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c icens_prodlim_ml.c -o icens_prodlim_ml.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c iindex.c -o iindex.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c life_table.c -o life_table.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c loo.c -o loo.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c neighborhood.c -o neighborhood.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c predict.c -o predict.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c predict_individual_survival.c -o predict_individual_survival.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c prodlim.c -o prodlim.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c prodlim_clustersurv.c -o prodlim_clustersurv.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c prodlim_comprisk.c -o prodlim_comprisk.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c prodlim_multistates.c -o prodlim_multistates.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c prodlim_surv.c -o prodlim_surv.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c sindex.c -o sindex.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c summary_prodlim.c -o summary_prodlim.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o prodlim.so GMLE.o IntIndex.o declareRoutines.o icens_prodlim.o icens_prodlim_ml.o iindex.o life_table.o loo.o neighborhood.o predict.o predict_individual_survival.o prodlim.o prodlim_clustersurv.o prodlim_comprisk.o prodlim_multistates.o prodlim_surv.o sindex.o summary_prodlim.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/prodlim/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (prodlim)
ERROR: dependency ‘CVST’ is not available for package ‘DRR’
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/DRR’
Warning in install.packages :
installation of package ‘DRR’ had non-zero exit status
* installing *source* package ‘scales’ ...
** package ‘scales’ successfully unpacked and MD5 sums checked
** libs
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c colors.cpp -o colors.o
g++ -shared -L/usr/local/lib64 -o scales.so RcppExports.o colors.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/scales/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (scales)
* installing *source* package ‘ddalpha’ ...
** package ‘ddalpha’ successfully unpacked and MD5 sums checked
** libs
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c AlphaProcedure.cpp -o AlphaProcedure.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c Common.cpp -o Common.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c DKnn.cpp -o DKnn.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c HD.cpp -o HD.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c Knn.cpp -o Knn.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c Mahalanobis.cpp -o Mahalanobis.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c OjaDepth.cpp -o OjaDepth.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c Polynomial.cpp -o Polynomial.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c PotentialDepth.cpp -o PotentialDepth.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c ProjectionDepth.cpp -o ProjectionDepth.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c SimplicialDepth.cpp -o SimplicialDepth.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c TukeyDepth.cpp -o TukeyDepth.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c ZonoidDepth.cpp -o ZonoidDepth.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c asa047.cpp -o asa047.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c ddalpha.cpp -o ddalpha.o
gfortran -fpic -g -O2 -c depth.fd.f -o depth.fd.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c init.c -o init.o
g++ -std=gnu++11 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/BH/include" -I"/opt/microsoft/mlserver/9.3.0/libraries/RServer/Rcpp/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c stdafx.cpp -o stdafx.o
g++ -std=gnu++11 -shared -L/usr/local/lib64 -o ddalpha.so AlphaProcedure.o Common.o DKnn.o HD.o Knn.o Mahalanobis.o OjaDepth.o Polynomial.o PotentialDepth.o ProjectionDepth.o SimplicialDepth.o TukeyDepth.o ZonoidDepth.o asa047.o ddalpha.o depth.fd.o init.o stdafx.o -lgfortran -lm -lquadmath
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/ddalpha/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Error : package ‘robustbase’ required by ‘ddalpha’ could not be found
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/ddalpha’
Warning in install.packages :
installation of package ‘ddalpha’ had non-zero exit status
* installing *source* package ‘assertive.types’ ...
** package ‘assertive.types’ successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.types)
* installing *source* package ‘assertive.files’ ...
** package ‘assertive.files’ successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.files)
* installing *source* package ‘ipred’ ...
** package ‘ipred’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c SdiffKM.c -o SdiffKM.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c init.c -o init.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o ipred.so SdiffKM.o init.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/ipred/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ipred)
ERROR: dependency ‘DRR’ is not available for package ‘dimRed’
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/dimRed’
Warning in install.packages :
installation of package ‘dimRed’ had non-zero exit status
* installing *source* package ‘assertive.strings’ ...
** package ‘assertive.strings’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.strings)
* installing *source* package ‘assertive.datetimes’ ...
** package ‘assertive.datetimes’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.datetimes)
* installing *source* package ‘assertive.code’ ...
** package ‘assertive.code’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.code)
* installing *source* package ‘ggplot2’ ...
** package ‘ggplot2’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ggplot2)
* installing *source* package ‘assertive.data’ ...
** package ‘assertive.data’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.data)
* installing *source* package ‘assertive.data.uk’ ...
** package ‘assertive.data.uk’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.data.uk)
* installing *source* package ‘assertive.data.us’ ...
** package ‘assertive.data.us’ successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (assertive.data.us)
ERROR: dependencies ‘dimRed’, ‘ddalpha’ are not available for package ‘recipes’
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/recipes’
Warning in install.packages :
installation of package ‘recipes’ had non-zero exit status
* installing *source* package ‘assertive’ ...
** package ‘assertive’ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (assertive)
ERROR: dependency ‘recipes’ is not available for package ‘caret’
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/caret’
Warning in install.packages :
installation of package ‘caret’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmpcd4Nux/downloaded_packages’
>
Raw
log_lines_183_184.out
> install.packages("zoo")
Installing package into ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 820k 100 820k 0 0 696k 0 0:00:01 0:00:01 --:--:-- 696k
* installing *source* package ‘zoo’ ...
** package ‘zoo’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c coredata.c -o coredata.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c init.c -o init.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c lag.c -o lag.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o zoo.so coredata.o init.o lag.o
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (zoo)
The downloaded source packages are in
‘/tmp/Rtmpcd4Nux/downloaded_packages’
> install.packages("xts")
Installing package into ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 512k 100 512k 0 0 604k 0 --:--:-- --:--:-- --:--:-- 604k
* installing *source* package ‘xts’ ...
** package ‘xts’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c add_class.c -o add_class.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c any.c -o any.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c attr.c -o attr.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c binsearch.c -o binsearch.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c coredata.c -o coredata.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c diff.c -o diff.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c dimnames.c -o dimnames.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c endpoints.c -o endpoints.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c extract_col.c -o extract_col.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c init.c -o init.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c isOrdered.c -o isOrdered.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c isXts.c -o isXts.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c leadingNA.c -o leadingNA.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c merge.c -o merge.o
gfortran -fpic -g -O2 -c period.max.f -o period.max.o
gfortran -fpic -g -O2 -c period.min.f -o period.min.o
gfortran -fpic -g -O2 -c period.prod.f -o period.prod.o
gfortran -fpic -g -O2 -c period.sum.f -o period.sum.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rbind.c -o rbind.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c rollfun.c -o rollfun.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c runSum.c -o runSum.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c startofyear.c -o startofyear.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c subset.c -o subset.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c subset.old.c -o subset.old.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c toperiod.c -o toperiod.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c totalcols.c -o totalcols.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c tryXts.c -o tryXts.o
gcc -std=gnu99 -I/opt/microsoft/mlserver/9.3.0/runtime/R/include -DNDEBUG -I../inst/include -I"/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/zoo/include" -I/usr/local/include -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -g -O2 -c unique.time.c -o unique.time.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o leadingNA.o merge.o period.max.o period.min.o period.prod.o period.sum.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -lgfortran -lm -lquadmath
installing to /home/hw831/R/x86_64-pc-linux-gnu-library/3.3/xts/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error : package ‘zoo’ required by ‘xts’ could not be found
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/hw831/R/x86_64-pc-linux-gnu-library/3.3/xts’
Warning in install.packages :
installation of package ‘xts’ had non-zero exit status
The downloaded source packages are in
‘/tmp/Rtmpcd4Nux/downloaded_packages’
>
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