rwest

From Jing Song's thesis:
 C. D. Wijaya made the rules for ranking the kinetics.  Here, the 
author quotes the description of the ranking rules in her thesis to illustrate the meaning of 
kinetics rank: "The quality rank number ranges from 1 to 5, with the 1 being most reliable.  
Rank 1 is assigned to rate rules parameters that are in good agreement with several 
literature data.  Parameters obtained from direct measurements in experiments, or from 
high-level quantum chemistry calculations that are in good agreement with experimental 
results are ranked 2.  Results from direct measurements, but at very limited temperature 

rwest

<?xml version="1.0" encoding="UTF-8"?>
<log>
 <activity filename="null" action="zip" startDate="8_26_10_1_41_PM" finishDate="8_26_10_1_59_PM">
  <record filename="/Users/rwest/XCodeProjects/PeterMurrayRust/patentData/../patentData/EPO-2009-03-04.xml"/>
  <record action="increased files from 1 to 0"/>
 </activity>
 <activity filename="null" action="unzip" startDate="8_26_10_1_59_PM" finishDate="8_26_10_1_59_PM">
  <record filename="/Users/rwest/XCodeProjects/PeterMurrayRust/patentData/../patentData/EPO-2009-03-04/EP 1023339B1.zip"/>
  <record filename="/Users/rwest/XCodeProjects/PeterMurrayRust/patentData/../patentData/EPO-2009-03-04/EP 1064300B1.zip"/>
  <record filename="/Users/rwest/XCodeProjects/PeterMurrayRust/patentData/../patentData/EPO-2009-03-04/EP 1123099B1.zip"/>

rwest

2010-08-27 18:21:32,733 INFO  org.xmlcml.cml.crystaleye.AbstractCrystaleyeVisitor @ chemicalTagger
2010-08-27 18:21:32,733 INFO  org.xmlcml.cml.crystaleye.AbstractCrystaleyeVisitor @ Input directory: /Users/rwest/XCodeProjects/PeterMurrayRust/patentData/../patentData
2010-08-27 18:21:32,733 INFO  org.xmlcml.cml.crystaleye.AbstractCrystaleyeVisitor @ listing files to generate: chemicalTagger ..filter.. org.xmlcml.cml.crystaleye.util.CrystaleyeUtil$3@56a47241
2010-08-27 18:21:36,045 INFO  org.xmlcml.cml.crystaleye.AbstractCrystaleyeVisitor @ found potential sources: 7085
2010-08-27 18:24:30,387 ERROR org.xmlcml.cml.crystaleye.supptext.ChemicalTaggerVisitor @ Cannot parse with ANTLR: 
org.antlr.runtime.tree.RewriteCardinalityException: rule oscarcm
	at org.antlr.runtime.tree.RewriteRuleElementStream._next(RewriteRuleElementStream.java:165)
	at org.antlr.runtime.tree.RewriteRuleElementStream.nextTree(RewriteRuleElementStream.java:145)
	at uk.ac.cam.ch.wwmm.pregenerated.ChemicalChunkerParser.oscarCompound3(Chemica

rwest

Richard-Wests-MacBook-Pro:Cellar rwest$ brew install cairo -vd
==> Build Environment
CC: /usr/bin/cc => /usr/bin/gcc-4.2
CXX: /usr/bin/c++ => /usr/bin/c++-4.2
LD: /usr/bin/cc => /usr/bin/gcc-4.2
CFLAGS: -O3 -march=core2 -w -pipe
CXXFLAGS: -O3 -march=core2 -w -pipe
CPPFLAGS: -I/usr/local/Cellar/libpng/1.2.44/include
LDFLAGS: -L/usr/local/Cellar/libpng/1.2.44/lib
MAKEFLAGS: -j2

rwest

diff --git a/run/RMG.log b/run/RMG.log
index 154ee3d..196b6cb 100644
--- a/run/RMG.log
+++ b/run/RMG.log
@@ -5,7 +5,7 @@
 #                                                                    #
 #                                                                    #
 #  This java code was compiled by ant at:                            #
-#    2011-01-19T13:45:21
+#    2011-01-19T13:52:03

rwest

diff --git a/chemkin/chem.inp b/chemkin/chem.inp
index a28712d..95509b3 100644
--- a/chemkin/chem.inp
+++ b/chemkin/chem.inp
@@ -4430,16 +4430,18 @@ CHEB / -7.8977000e-01 3.1727000e-01 1.0813000e-02 -6.8075000e-03 /
 CHEB / -4.6521000e-01 9.6482000e-02 2.6498000e-02 -2.1226000e-03 /
 CHEB / -2.5026000e-01 1.1427000e-03 1.6256000e-02 2.5171000e-03 /
 
-
-HCjO(15)+Hj(13)(+m)=CO(8)+H2(14)(+m)                	1.0E0 0.0 0.0	!NetReaction from PDepNetwork #26 (CH2O)

rwest

#!/usr/bin/ruby
require 'osx/foundation'
OSX.require_framework '/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework'
include OSX

$d=File.basename Dir.pwd
Dir.chdir '..'

fsevents_cb = proc do |stream, ctx, numEvents, paths, marks, eventIDs|
  # system "rsync -L -C --delete -rt --rsh='ssh -p 2222' --exclude 'public/bundles' '#{$d}' 'eanderson@localhost:/home/eanderson/sandbox/'"

rwest

diff --git a/Makefile b/Makefile
index 1084fa7..d70dfbd 100644
--- a/Makefile
+++ b/Makefile
@@ -16,21 +16,40 @@ BINDIR=$(CURDIR)/bin
 # The directory in which to run RMG (used for the test)
 RUNDIR=$(CURDIR)/run
 
-# The Fortran 90 compiler to use and flags to use when compiling Fortran 90 
-# code

rwest

import re
re_f_float_neg = re.compile('(-?[0-9.]*)(-\d\d\d)')
def fortran_float(input_string):
    """
    Return a float of the input string, just like `float(input_string)`,
    but allowing for Fortran's string formatting to screw it up when 
    you have very small numbers (like 0.31674-103 instead of 0.31674E-103 )
    """
    try:
        fl = float(input_string)

rwest

-- Drop this script in ~/Library/Address Book Plug-Ins
-- Edit the path in the "do shell script" line
using terms from application "Address Book"
	on action property
		return "phone"
	end action property
	
	on action title for aPerson with aNumber
		return "Dial with Google Voice"
	end action title