Ryosuke Takeuchi rysk-t
rysk-t
/ calcium_ezPlot.m
Last active
June 13, 2017 11:44
MATLAB script: first step of calcium imaging data
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| %% 読み込みファイル (uigetfileを使うと良い) | |
| clear all; | |
| imname = 'Registered_03.tif'; | |
| %% Tiff header情報の の読み取り | |
| tObj = Tiff(imname, 'r'); | |
| tags = tObj.getTagNames; | |
| info = imfinfo(imname); | |
| tic |
rysk-t
/ ranksum_eff.m
Last active
May 29, 2017 05:32
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| function [p, r, z, stat] = ranksum_eff(A, B) | |
| % [p, r, z, stat] = ranskum_eff(A, B) | |
| % | |
| % | |
| % Ryosuke Takeuchi 2017 | |
| % | |
| % 参考: http://www.mizumot.com/files/EffectSize_KELES31.pdf | |
| [p, ~, stat] = ranksum(A, B); | |
| z = stat.zval; |
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| imroot = '\\NSQNAP2\Public\Intrinsic\Data\160523-182344'; | |
| files = dir([imroot filesep '*.tiff']); | |
| % collect filename idx | |
| for i = 1:length(files) | |
| filename = files(i).name; | |
| idx(i) = str2num(filename(1:end-5)); | |
| end | |
| [hoge, idx] = sort(idx); | |
| files = files(idx); |
rysk-t
/ demo_drtoolbox.m
Last active
November 14, 2016 02:58
Example codes of drtoolbox (https://lvdmaaten.github.io/drtoolbox/)
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| % DR-sample codes | |
| clear all; close all | |
| load fisheriris | |
| method{1} = 'PCA'; | |
| method{2} = 'MDS'; | |
| method{3} = 'FactorAnalysis'; | |
| method{4} = 'tSNE'; | |
| for i = 1:length(method) |
rysk-t
/ file0.txt
Last active
October 14, 2016 13:10
MatlabでlibSVM (&libnlinear) を導入，fisher data に適用する ref: http://qiita.com/rysk-t/items/a0281ed80db999575dd3
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| >> addpath(genpath('path¥to¥libsvm')) |
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| % % SVMtest | |
| load('fisheriris.mat') | |
| labels = unique(species); | |
| specIdx = zeros(150,1); | |
| for i = 1:length(labels) | |
| specIdx(find(strcmp(species, labels{i})))=i; | |
| end | |
| test1 = randperm(150); |
rysk-t
/ scanOptim.py
Created
August 25, 2016 05:38
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| #!/usr/bin/env python | |
| # -*- coding: utf-8 -*- | |
| import codecs | |
| import sys | |
| import os | |
| import glob | |
| import time | |
| import matplotlib.pyplot as plt | |
| import numpy as np |
rysk-t
/ intrinsic.m
Created
May 23, 2016 11:27
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| root = 'F:\Datas\intrinsic\160515-165123'; | |
| root = '\\nsqnap2\Public\Intrinsic\Data\160523-185221' | |
| imgfiles = dir([root filesep '*.tiff']); | |
| clear frames; close all; | |
| % frames = uint16(zeros([1024 1280 length(imgfiles)])); | |
| for i = 1:length(imgfiles) | |
| idx = num2str(imgfiles(i).name(1:end-5)); | |
| buf = imread([root filesep imgfiles(i).name]); | |
| frames(:,:,str2num(imgfiles(i).name(1:end-5))) = buf; |
rysk-t
/ mydeeptexture.py
Created
May 12, 2016 13:06
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| # coding: utf-8 | |
| import glob | |
| import sys | |
| import os | |
| from collections import OrderedDict | |
| import caffe | |
| import time | |
| import pylab | |
| import matplotlib.image as mimg | |
| import matplotlib.pyplot |
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| set dirname to (getTimeStamp() as string) -- 時間で | |
| do shell script "mkdir ~/Data/scrs/" & dirname & "/" -- ディレクトリ作成 | |
| repeat with p from 1 to 110 -- ページ数 | |
| set pstr to p | |
| set pstr to text -3 thru -1 of ("00" & pstr) | |
| set tgt_file to "ssw" & "scr" & "_" & (pstr) & ".jpg" | |
| -- 出力するファイル名を「sswyyyymmddhhmmss.jpg」に。 | |
| tell application "Kindle 2" -- 通常 "Kindle" でよい | |
| activate -- ウインドウフォーカスを移す |