sa-lee

gif_tour <- function(data, tour_path, display, ... ) {
  dir <- tempdir()
  png_path <- file.path(dir, "frame%03d.png")
  
  tourr::render(data,
                tour_path = tour_path,
                display = display,
                dev = "png",
                png_path,

sa-lee

Beyond the cell atlas conference

Can follow here: Beyond the Cell Atlas: Live – Chan Zuckerberg Biohub

Monday September 24, 2018

Ido Amit

• Using single cell to understand molecular physiology
• mostly around development of lung
• also touched on alzheimers

sa-lee

library(nullabor)
library(gganimate)
library(magrittr)

p <- mtcars %>% 
  rorschach(method = null_permute("mpg"), n = 20, true = .) %>% 
  ggplot() +
  geom_boxplot(aes(x = factor(cyl), y = mpg, fill = factor(cyl))) +
  theme(legend.position = 'none', aspect.ratio = 1) +
  xlab("cyl")

sa-lee

library(parallel)
library(stringr)
# prelim setup
structure_binary <- "/path/to/structure"
n.cores <- 8

# number of Ks to try
tryK <- 1L:20L
n.runs <- 1L:20L