Stuart Lee sa-lee

Beyond the cell atlas conference

Can follow here: Beyond the Cell Atlas: Live – Chan Zuckerberg Biohub

Monday September 24, 2018

Ido Amit

Using single cell to understand molecular physiology
mostly around development of lung
also touched on alzheimers

gif_tour <- function(data, tour_path, display, ... ) {
  dir <- tempdir()
  png_path <- file.path(dir, "frame%03d.png")
  
  tourr::render(data,
                tour_path = tour_path,
                display = display,
                dev = "png",
                png_path,

	library(parallel)
	library(stringr)
	# prelim setup
	structure_binary <- "/path/to/structure"
	n.cores <- 8

	# number of Ks to try
	tryK <- 1L:20L
	n.runs <- 1L:20L

	library(nullabor)
	library(gganimate)
	library(magrittr)

	p <- mtcars %>%
	rorschach(method = null_permute("mpg"), n = 20, true = .) %>%
	ggplot() +
	geom_boxplot(aes(x = factor(cyl), y = mpg, fill = factor(cyl))) +
	theme(legend.position = 'none', aspect.ratio = 1) +
	xlab("cyl")