Panama.xml

panama.xml

<tool id="panama1" name="panama"  version="1.0.0">
    <requirements>
        <requirement type="package">panama</requirement>
    </requirements>
    <description>eQTL Analysis using PANAMA(http://ml.sheffield.ac.uk/qtl/panama/)</description>
    <command interpreter="python">
        panama_run.py --exp_data=$expression_data --snp_data=$snp_data --output1=$output1
    </command>
    <inputs>
        <param name="expression_data" type="data" format="text" label="Select Expression Data" />
        <param name="snp_data" type="data" format="text" label="Select SNP data" />
    </inputs>
    <outputs>
        <data name="output1" format="text" />
    </outputs>
    <tests>
        <test>
            <param name="expression_data" value="sim_expr.csv" />
            <param name="snp_data" value="sim_snps.csv" />
            <output name="output1" file="PANAMA_results.csv" />
        </test>
    </tests>


</tool>