mismatcher

mismatcher.py

def get_mismatch_list(base_query, mismatch_n):
    for i, ch in enumerate(base_query):
        gap_filler = ""
        out_str = ""
        for m in range(0, mismatch_n):
            true_index = i + m
            if true_index >= len(base_query):
                true_index = true_index - len(base_query)
            target_element = base_query[true_index]
            print 'target ', target_element
            
        yield  base_query[0:i] + gap_filler + base_query[1 + i:]


def test_mismatch_list():
    out_l = get_mismatch_list("abcdefgh", 3)
    for a in out_l:
        print a