SCDE example data

scde_example.json

{
    "_id": {
        "$oid": "4f5e631e69adda9f62821f90"
    }, 
    "category": "c2", 
    "description": "Genes up-regulated in pancreatic cancer cells grown in orthotopic xenograft tumors compared to those grown in vitro.", 
    "human-ensembl": [
        "ENSG00000142789", 
        "ENSG00000133110", 
        "ENSG00000112664", 
        "ENSG00000168904", 
        "ENSG00000108821", 
        "LRG_1", 
        "ENSG00000164692", 
        "LRG_2", 
        "ENSG00000168542", 
        "LRG_3", 
        "ENSG00000153002", 
        "ENSG00000150281", 
        "ENSG00000219073", 
        "ENSG00000125869", 
        "ENSG00000213931", 
        "ENSG00000182851", 
        "ENSG00000130203", 
        "ENSG00000254647", 
        "ENSG00000143878", 
        "ENSG00000168928", 
        "ENSG00000197594", 
        "ENSG00000168758", 
        "ENSG00000010438", 
        "ENSG00000165731", 
        "ENSG00000125398"
    ], 
    "human-entrez": [
        "5167", 
        "100288400", 
        "338328", 
        "388", 
        "10631", 
        "440387", 
        "54910", 
        "10136", 
        "3630", 
        "6662", 
        "1281", 
        "1360", 
        "1489", 
        "5646", 
        "123355", 
        "100272216", 
        "348", 
        "24141", 
        "5979", 
        "6955", 
        "283120", 
        "11165", 
        "23436", 
        "1277", 
        "1278", 
        "3046"
    ], 
    "human-symbol": [
        "ENPP1", 
        "LOC100272216", 
        "C20ORF103", 
        "CTF1", 
        "COL3A1", 
        "POSTN", 
        "SOX9", 
        "H19", 
        "INS", 
        "APOE", 
        "PRSS3", 
        "RHOB", 
        "LOC100288400", 
        "GPIHBP1", 
        "CELA3A", 
        "RET", 
        "CELA3B", 
        "NUDT3", 
        "CTRB2", 
        "LRRC28", 
        "TRA@", 
        "HBA1", 
        "HBA2", 
        "CELA2A", 
        "CELA2B", 
        "COL1A2", 
        "SEMA4C", 
        "COL1A1", 
        "HBE1", 
        "CPB1", 
        "PRSS1", 
        "PRSS2"
    ], 
    "id": "M7581", 
    "mouse-ensembl": [
        "ENSMUSG00000023433", 
        "ENSMUSG00000078520", 
        "ENSMUSG00000027750", 
        "ENSMUSG00000024213", 
        "ENSMUSG00000030556", 
        "ENSMUSG00000001506", 
        "ENSMUSG00000029661", 
        "ENSMUSG00000026043", 
        "ENSMUSG00000011463", 
        "ENSMUSG00000042340", 
        "ENSMUSG00000027270", 
        "ENSMUSG00000052187", 
        "ENSMUSG00000022579", 
        "ENSMUSG00000002985", 
        "ENSMUSG00000000215", 
        "ENSMUSG00000035804", 
        "ENSMUSG00000054364", 
        "ENSMUSG00000031957", 
        "ENSMUSG00000037370", 
        "ENSMUSG00000026121", 
        "ENSMUSG00000054106", 
        "ENSMUSG00000036938", 
        "ENSMUSG00000071521", 
        "ENSMUSG00000071517", 
        "ENSMUSG00000062751", 
        "ENSMUSG00000058119", 
        "ENSMUSG00000071519", 
        "ENSMUSG00000057163", 
        "ENSMUSG00000030110", 
        "ENSMUSG00000000567"
    ], 
    "mouse-entrez": [
        "16334", 
        "20682", 
        "12842", 
        "11816", 
        "76703", 
        "68453", 
        "67868", 
        "56409", 
        "12825", 
        "20353", 
        "76161", 
        "50706", 
        "12843", 
        "19713", 
        "67867", 
        "66473", 
        "16333", 
        "103964", 
        "18605", 
        "13019", 
        "15135", 
        "100503273", 
        "22074", 
        "11852", 
        "22072", 
        "436523", 
        "114228", 
        "100040233", 
        "22073", 
        "386551", 
        "436522", 
        "242711"
    ], 
    "mouse-symbol": [
        "Ins2", 
        "Sox9", 
        "Col1a1", 
        "Apoe", 
        "Cpb1", 
        "Gpihbp1", 
        "Cela3b", 
        "Nudt3", 
        "Col3a1", 
        "Sema4c", 
        "6330527O06Rik", 
        "Postn", 
        "Col1a2", 
        "Ret", 
        "Lrrc28", 
        "Ctrb1", 
        "Ins1", 
        "Try5", 
        "Enpp1", 
        "Ctf1", 
        "Hbb-y", 
        "Try4", 
        "Rhob", 
        "Prss2", 
        "Gm5771", 
        "Prss1", 
        "Gm10334", 
        "Prss3", 
        "Try10", 
        "Gm13011"
    ], 
    "name": "NAKAMURA_CANCER_MICROENVIRONMENT_UP", 
    "organism": "Human", 
    "pmid": "17210693", 
    "source": "MSigDB", 
    "subcategory": "CGP", 
    "url": "http://www.broadinstitute.org/gsea/msigdb/cards/NAKAMURA_CANCER_MICROENVIRONMENT_UP"
}