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samuell/fingerprintworker_errorlog.java

Last active August 29, 2015 14:05
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fingerprintworker_errorlog.java
ERROR:root:Command failed: salloc -A b2013262 -p devel -n 16 -t 1:00:00 -J nana60GenerateFingerprint srun -n 1 -c 16 java -jar jars/FingerprintsGenerator.jar -fp ecfbit -inputfile /pica/v6/b2013262_nobackup/workflows/workflows/data/training_60.data -parser 1 -outputfile /pica/v6/b2013262_nobackup/workflows/workflows/data/training_60.data
ERROR:root:OUTPUT OF FAILED COMMAND: salloc: Granted job allocation 2698088;
srun: Job step created;
Input file: /pica/v6/b2013262_nobackup/workflows/workflows/data/training_60.data;
Output file: /pica/v6/b2013262_nobackup/workflows/workflows/data/training_60.data.ecfbit.csr;
Key-value log file: /pica/v6/b2013262_nobackup/workflows/workflows/data/training_60.data.ecfbit.csr.log;
Fingerprint: null;
Working threads: 16;
Max non hydrogen atoms: 50;
Min non hydrogen atoms: 5;
;
Reading input files...Creating work chunks...Done.;
Exception in thread "pool-1-thread-14" Exception in thread "pool-1-thread-16" Exception in thread "pool-1-thread-8" Exception in thread "pool-1-thread-15" Exception in thread "pool-1-thread-10" Exception in thread "pool-1-thread-9" Exception in thread "pool-1-thread-6" java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
Exception in thread "pool-1-thread-11" Exception in thread "pool-1-thread-7" Exception in thread "pool-1-thread-1" Exception in thread "pool-1-thread-3" Exception in thread "pool-1-thread-13" java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
Exception in thread "pool-1-thread-2" java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
java.lang.NullPointerException;
at generate.signaturefingerprints.FingerprintWorker.run(FingerprintWorker.java:71);
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145);
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615);
at java.lang.Thread.run(Thread.java:745);
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