Created
December 19, 2013 10:29
-
-
Save samuell/8037242 to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| { | |
| "tool": { | |
| "accepts_input": true, | |
| "backend": "nullbackend", | |
| "cpus": "", | |
| "description": "", | |
| "display_name": "MzXML2Search", | |
| "enabled": true, | |
| "fs_backend": "nullbackend", | |
| "inputExtensions": [ | |
| "*.mzXML", | |
| "*.mzxml" | |
| ], | |
| "job_type": "", | |
| "max_memory": null, | |
| "module": "tpp/4.3.1", | |
| "name": "ccg.mzxml2search", | |
| "outputExtensions": [ | |
| { | |
| "file_extension__pattern": "*.mgf", | |
| "must_be_larger_than": null, | |
| "must_exist": true | |
| } | |
| ], | |
| "parameter_list": [ | |
| { | |
| "acceptedExtensionList": [ | |
| "*.mzXML", | |
| "*.mzxml" | |
| ], | |
| "batch_bundle_files": false, | |
| "default_value": "", | |
| "file_assignment": "batch", | |
| "helptext": "", | |
| "hidden": false, | |
| "id": 2712, | |
| "mandatory": true, | |
| "output_file": false, | |
| "possible_values": "", | |
| "rank": 99, | |
| "switch": "inputFiles", | |
| "switch_use__description": "Only the value will be passed in the argument list (ie. the switch won't be used)", | |
| "switch_use__display_text": "valueOnly", | |
| "switch_use__formatstring": "%(value)s", | |
| "use_output_filename__switch": null | |
| }, | |
| { | |
| "acceptedExtensionList": [], | |
| "batch_bundle_files": false, | |
| "default_value": "-mfg", | |
| "file_assignment": "none", | |
| "helptext": "Output format.", | |
| "hidden": false, | |
| "id": 2713, | |
| "mandatory": true, | |
| "output_file": false, | |
| "possible_values": { | |
| "value": [ | |
| { | |
| "display": "mgf format", | |
| "value": "-mgf" | |
| }, | |
| { | |
| "display": "dta format", | |
| "value": "-dta" | |
| } | |
| ] | |
| }, | |
| "rank": 2, | |
| "switch": "outputFormat", | |
| "switch_use__description": "Only the value will be passed in the argument list (ie. the switch won't be used)", | |
| "switch_use__display_text": "valueOnly", | |
| "switch_use__formatstring": "%(value)s", | |
| "use_output_filename__switch": null | |
| }, | |
| { | |
| "acceptedExtensionList": [], | |
| "batch_bundle_files": false, | |
| "default_value": "", | |
| "file_assignment": "none", | |
| "helptext": "Activation method.", | |
| "hidden": false, | |
| "id": 2714, | |
| "mandatory": true, | |
| "output_file": false, | |
| "possible_values": { | |
| "value": [ | |
| { | |
| "display": "Collision Ion Detection", | |
| "value": "CID" | |
| }, | |
| { | |
| "display": "Electron Transfer Dissociation", | |
| "value": "ETD" | |
| } | |
| ] | |
| }, | |
| "rank": 3, | |
| "switch": "-A", | |
| "switch_use__description": "Both the switch and the value will be passed in the argument list. They will be joined together with no space between them.", | |
| "switch_use__display_text": "combined", | |
| "switch_use__formatstring": "%(switch)s%(value)s", | |
| "use_output_filename__switch": null | |
| }, | |
| { | |
| "acceptedExtensionList": [], | |
| "batch_bundle_files": false, | |
| "default_value": "", | |
| "file_assignment": "none", | |
| "helptext": "MS level.", | |
| "hidden": false, | |
| "id": 2715, | |
| "mandatory": true, | |
| "output_file": false, | |
| "possible_values": { | |
| "value": [ | |
| { | |
| "display": "1", | |
| "value": "1" | |
| }, | |
| { | |
| "display": "2", | |
| "value": "2" | |
| }, | |
| { | |
| "display": "1-3", | |
| "value": "1-3" | |
| }, | |
| { | |
| "display": "2-6", | |
| "value": "2-6" | |
| } | |
| ] | |
| }, | |
| "rank": 4, | |
| "switch": "-M", | |
| "switch_use__description": "Both the switch and the value will be passed in the argument list. They will be joined together with no space between them.", | |
| "switch_use__display_text": "combined", | |
| "switch_use__formatstring": "%(switch)s%(value)s", | |
| "use_output_filename__switch": null | |
| }, | |
| { | |
| "acceptedExtensionList": [], | |
| "batch_bundle_files": false, | |
| "default_value": "output.mgf", | |
| "file_assignment": "none", | |
| "helptext": "Output file.", | |
| "hidden": false, | |
| "id": 2716, | |
| "mandatory": true, | |
| "output_file": false, | |
| "possible_values": "", | |
| "rank": 5, | |
| "switch": "-O", | |
| "switch_use__description": "Both the switch and the value will be passed in the argument list. They will be joined together with no space between them.", | |
| "switch_use__display_text": "combined", | |
| "switch_use__formatstring": "%(switch)s%(value)s", | |
| "use_output_filename__switch": null | |
| } | |
| ], | |
| "path": "MzXML2Search", | |
| "queue": "", | |
| "walltime": "" | |
| } | |
| } |
Author
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Formatted with: