samuell

syntax on
set showmatch
set ignorecase
set showmode
set ts=4
set sw=4
set autoindent
set smartindent

" Enable file type plugins

samuell

#!/bin/bash
/usr/bin/python -c "help(\"$1\")"

samuell

cythonize() {
    cython --embed $1.py
    gcc -I/usr/include/python2.7 -o $1 $1.c -lpython2.7
}

samuell

RewriteEngine On
RewriteBase /
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule ^wiki/(.*)$ /subfolder/w/index.php?title=$1 [L,QSA]
RewriteRule ^$/subfolder/wiki/  [L,QSA]

<?php

$wgScriptPath       = "/subfolder/w";

samuell

{
    "_id": {
        "$oid": "4f5e631e69adda9f62821f90"
    }, 
    "category": "c2", 
    "description": "Genes up-regulated in pancreatic cancer cells grown in orthotopic xenograft tumors compared to those grown in vitro.", 
    "human-ensembl": [
        "ENSG00000142789", 
        "ENSG00000133110", 
        "ENSG00000112664", 

samuell

#!/bin/bash
galaxypid=$(ps -efw|grep paster|awk '{ print $2 }'|head -n 1);kill $galaxypid;
sh run.sh &

samuell

'''
Read a tab separated file, with headers, into a "list" (or better, 
a generator object returning items, but behaves similar), where 
each dict uses the headers in the first line as keys.
Author: Samuel Lampa 2013 - [email protected]
'''

# Open file
infile = open(some_filename)

samuell

import re
import string
 
def main():
    file = open("Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa","r")
    a = 0
    t = 0
    g = 0
    c = 0
    for line in file:

samuell

import re
import string
 
def main():
    file = open("Homo_sapiens.GRCh37.67.dna_rm.chromosome.Y.fa","r")
    cdef int a, t, c, g
    a = 0
    t = 0
    g = 0
    c = 0

samuell

program gc;
{$mode objfpc} // Do not forget this ever
 
uses
    Sysutils;
 
var
    FastaFile: TextFile;
    CurrentLine: String;
    GCCount: Integer;