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October 6, 2022 07:05
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[makimiik@puhti-login12 ~]$ sinteractive --account project_2003758 --mem 64000 --tmp 640 --cores 4 | |
Launching a new interavtive job | |
Interactive batch job is launched with following resources: | |
Maximum run time (hours:min:sec): 24:00:00 | |
Maximum memory (MB): 64000 | |
$TMPDIR size (GB): 640 | |
Number of cores/threads: 4 | |
Accounting project: project_2003758 | |
srun: job 13488501 queued and waiting for resources | |
srun: job 13488501 has been allocated resources | |
[makimiik@r18c02 ~]$ module load r-env-singularity | |
------------------------------ | |
r-env 4.2.1 | |
https://docs.csc.fi/apps/r-env | |
------------------------------ | |
[makimiik@r18c02 ~]$ start-rstudio-server | |
Launching RStudio Server... | |
/appl/soft/math/r-env/421/start-rstudio-server: line 25: python: command not found | |
INFO: Detected Singularity user configuration directory | |
RStudio Server SSH tunneling instructions | |
------------------------------------------------------------------------- | |
RStudio Server requires SSH keys, for details see: | |
https://docs.csc.fi/apps/r-env | |
Copy/Paste this in your local terminal to SSH tunnel with remote | |
-------------------------------------------------------------------------- | |
Linux / macOS / MobaXterm: | |
ssh -N -L 8787:localhost: -J [email protected] [email protected] | |
PuTTy: | |
ssh -N -L :localhost: [email protected] | |
Set Source (8787) and Destination (localhost:) in: | |
PuTTy -> Connection -> SSH -> Tunnels | |
-------------------------------------------------------------------------- | |
Copy/Paste this URL into your browser | |
-------------------------------------------------------------------------- | |
http://localhost:8787/ | |
-------------------------------------------------------------------------- | |
Enter these at the sign-in screen | |
-------------------------------------------------------------------------- | |
Username: makimiik Password: cj7AwcLg4CrG+BERxSUx | |
-------------------------------------------------------------------------- | |
To stop RStudio Server: Ctrl + C | |
/usr/lib/rstudio-server/bin/rserver: /usr/pgsql-14/lib/libpq.so.5: no version information available (required by /usr/lib/rstudio-server/bin/rserver) | |
TTY detected. Printing informational message about logging configuration. Logging configuration loaded from '/etc/rstudio/logging.conf'. Logging to '/users/makimiik/.local/share/rstudio/log/rserver.log'. | |
2022-10-06T06:58:22.708895Z [rserver] ERROR Attempt to run server as user 'rstudio-server' (uid 997) from account 'makimiik' (uid 10011376) without privilege, which is required to run as a different uid; LOGGED FROM: virtual rstudio::core::ProgramStatus rstudio::server::Options::read(int, char* const*, std::ostream&) src/cpp/server/ServerOptions.cpp:322 | |
ssh -N -L 8787:localhost: -J [email protected] [email protected] | |
cj7AwcLg4CrG+BERxSUxhttps://chat.csc.fi/invite/Xi9cHN[makimiik@r18c02 ~]$ |
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