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sarthakpati/read_dicom_seg.py

Created May 10, 2021 22:22
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read_dicom_seg.py
## Ref: https://github.com/razorx89/pydicom-seg#getting-started
import pydicom
import pydicom_seg
import SimpleITK as sitk
dcm_path = pydicom.dcmread('/path/to/segmentation.dcm')
reader = pydicom_seg.MultiClassReader()
result = reader.read(dcm_path)
image_data = result.data # directly available
image = result.image # lazy construction
sitk.WriteImage(image, '/path/for/saving/segmentation.nii.gz', True)
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