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import pandas as pd | |
import torch | |
import h5py | |
from openslide import OpenSlide | |
import os | |
import numpy as np | |
from joblib import Parallel, delayed | |
from features import extract_features_single_tile | |
import json | |
from scipy.stats import mannwhitneyu |
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error404 = paste0( | |
"<!DOCTYPE html>", | |
"<html lang=\"en\">", | |
"<head>", | |
" <meta charset=\"UTF-8\">", | |
" <meta name=\"viewport\" content=\"width=device-width, initial-scale=1.0\">", | |
" <title>Resources not found</title>", | |
"</head>", | |
"<body>", | |
" <div class=\"main\">", |
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#!/usr/bin/env Rscript | |
library(httr, include.only = c("GET", "add_headers", "content")) | |
library(jsonlite, include.only = c("fromJSON", "write_json")) | |
library(glue, include.only = c("glue")) | |
GITHUB_TOKEN <- Sys.getenv("GITHUB_TOKEN") | |
JSON_FILE <- "webr-experiments.json" | |
HTML_FILE <- "webr-experiments/index.html" |
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plaka | il_adi | lat | lon | northeast_lat | northeast_lon | southwest_lat | southwest_lon | |
---|---|---|---|---|---|---|---|---|
1 | ADANA | 37.00000000 | 35.32133330 | 37.07200400 | 35.46199500 | 36.93552300 | 35.17470600 | |
2 | ADIYAMAN | 37.76416670 | 38.27616670 | 37.82566700 | 38.33546500 | 37.71708600 | 38.18818800 | |
3 | AFYONKARAHΔ°SAR | 38.76376000 | 30.54034000 | 38.80210500 | 30.61116700 | 38.71428900 | 30.44232000 | |
4 | AΔRI | 39.72166670 | 43.05666670 | 39.74860500 | 43.08524100 | 39.68814400 | 43.00177800 | |
5 | AMASYA | 40.65000000 | 35.83333330 | 40.67283400 | 35.85632100 | 40.63691100 | 35.78909100 | |
6 | ANKARA | 39.92077000 | 32.85411000 | 40.10098100 | 33.02486600 | 39.72282100 | 32.49909700 | |
7 | ANTALYA | 36.88414000 | 30.70563000 | 36.97517800 | 30.84095300 | 36.78586600 | 30.51609500 | |
8 | ARTVΔ°N | 41.18333330 | 41.81666670 | 41.20707800 | 41.85479900 | 41.15541500 | 41.77736100 | |
9 | AYDIN | 37.84440000 | 27.84580000 | 37.87099700 | 27.88535500 | 37.81957300 | 27.79052200 |
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library(dplyr) | |
library(ggplot2) | |
library(patchwork) | |
library(ggiraph) | |
dat <- gapminder::gapminder |> | |
janitor::clean_names() |> | |
mutate( | |
# ID that is shared for boxplots (this one uses factors, i.e. numbers, as ID instead of continents) |
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# a combination of | |
# https://stackoverflow.com/questions/1815606/determine-path-of-the-executing-script/15373917#15373917 | |
# https://stackoverflow.com/questions/1815606/determine-path-of-the-executing-script/7585599#7585599 | |
# https://stackoverflow.com/questions/47044068/get-the-path-of-current-script/47045368#47045368 | |
# https://stackoverflow.com/questions/53512868/how-to-automatically-include-filepath-in-r-markdown-document/53516876#53516876 | |
stub <- function() {} | |
thisPath <- function() { | |
cmdArgs <- commandArgs(trailingOnly = FALSE) | |
if (length(grep("^-f$", cmdArgs)) > 0) { | |
# R console option |
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check_rproj_dupes <- function() { | |
os <- .Platform$OS.type | |
if (os == "unix") { | |
ps_out <- system("ps -e", intern = TRUE) | |
ps_rproj <- ps_out[grepl(".Rproj", ps_out)] | |
ps_split <- strsplit(ps_rproj, "\\s") | |
rproj_paths <- lapply(ps_split, function(x) x[grepl(".Rproj$", x)]) |
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library(tidyverse) | |
color_palette <- thematic::okabe_ito(8) | |
flights <- nycflights13::flights | |
counts <- flights %>% | |
mutate( | |
date = lubridate::make_date(year = year, month = month, day = day) | |
) %>% | |
count(date) %>% | |
mutate( |
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<!DOCTYPE html> | |
<html> | |
<head> | |
<script> | |
var data | |
var formId = 'form' | |
function drawForm() { | |
if (!data) return | |
var outputEl = document.getElementById(formId); |
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<div style="font-family: sans-serif;"> | |
<? var data = valid(); ?> | |
<form id="form" name="form"> | |
<? if(Object.prototype.toString.call(data) === '[object Array]') { ?> | |
<? for (var i = 0; i < data.length; i++) { ?> | |
<? for (var j = 0; j < data[i].length; j++) { ?> | |
<input type="checkbox" id="ch<?= '' + i + j ?>" name="ch<?= '' + i + j ?>" value="<?= data[i][j] ?>"><?= data[i][j] ?><br> | |
<? } ?> | |
<? } ?> | |
<? } else { ?> |
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