Serdar Balcı sbalci

To remove a submodule you need to:

Delete the relevant section from the .gitmodules file.
Stage the .gitmodules changes git add .gitmodules
Delete the relevant section from .git/config.
Run git rm --cached path_to_submodule (no trailing slash).
Run rm -rf .git/modules/path_to_submodule (no trailing slash).
Commit git commit -m "Removed submodule "
Delete the now untracked submodule files rm -rf path_to_submodule

Update a git repo

With this script, you can easily update a git repo.

Install

curl -# https://gist.githubusercontent.com/Menencia/6435756/raw/update.sh > update.sh
curl -# https://gist.githubusercontent.com/Menencia/6435756/raw/version.sh > version.sh

https://github.com/brentthorne/posterdown

https://github.com/rstudio/pagedown

https://github.com/GerkeLab/betterposter

https://github.com/pzhaonet/postr

https://github.com/odeleongt/postr

First Method

Deleting the .git folder may cause problems in our git repository. If we want to delete all of our commits history, but keep the code in its current state, try this:

# Check out to a temporary branch:
git checkout --orphan TEMP_BRANCH

# Add all the files:
git add -A

	#### 1. Sign up at GitHub.com ################################################

	## If you do not have a GitHub account, sign up here:
	## https://github.com/join

	# ----------------------------------------------------------------------------

	#### 2. Install git ##########################################################

	## If you do not have git installed, please do so:

	import qupath.lib.scripting.QP
	import qupath.lib.geom.Point2
	import qupath.lib.roi.PolygonROI
	import qupath.lib.objects.PathAnnotationObject
	import qupath.lib.images.servers.ImageServer


	//Aperio Image Scope displays images in a different orientation
	def rotated = true

	`<-` <- function(lhs, rhs, envir = parent.frame()) {
	assign(as.character(substitute(lhs)), rhs, envir)
	lockBinding(substitute(lhs), envir)
	invisible(rhs)
	}

	Collection of scripts mostly from Pete, but also taken from the forums. Note you can always run a saved classifier using the
	runClassifier() command, with the file path included as a string.

	TOC

	A simple cell classifier.groovy - One way to classify cells.

	A simple classifier 2.groovy - Another way.

	Annotation Classifications to Name field.groovy - Sets the Name of the annotation to its classification. Useful for applying a second

	<?php
	/*
	Add bcc for checkout emails
	*/
	function my_pmpro_email_headers_admin_emails($headers, $email)
	{
	//bcc checkout emails
	if($email->template == "membership_expiring" \|\| $email->template == "membership_expired")
	{
	//add bcc

	/**
	* QuPath script to calculate areas (e.g. of tumor) based upon classified cells only.
	*
	* It works by using a distance transform applied to binary images generated from the
	* objects of each class, and then assigns each pixel to the closest object.
	*
	* Having done this, new annotations are generated for these regions.
	*
	* WARNINGS!
	* - This will remove all previous annotations & replace them with new annotations