Check disk quota prior to running workflows with 100s of jobs in queue

diskcheck.sh

#!/usr/bin/env bash

## following will prevent running of queued jobs if tier 1 space is > 99 %
tstamp="$(date +%d%b%y_%H%M%S_%Z)"

## available files: tier1state.txt, tier2state.txt, faststate.txt
## These files updates every 30 min per disk status.
diskstat=$(cat /projects/verhaak-lab/verhaak_env/SetEnv/logs/diskstats/tier1state.txt)
diskstat=${diskstat:-"NA"}

if [[ "${diskstat}" -ge 99 ]]; then
	printf "ERR\t%s\tTier 1 space is almost full. Exiting now!\tdisk_pct: %s" "${tstamp}" "${diskstat}"
	exit 1
else
	echo "All good to go and startin a job!"
fi