davfre

SAM and BAM filtering one-liners

@author: David Fredman, david.fredmanAAAAAA@gmail.com (sans poly-A tail)
@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/

Please extend with additional/faster/better solutions via a pull request!

BWA mapping (using piping for minimal disk I/O)

KartikTalwar

The fastest remote directory rsync over ssh archival I can muster (40MB/s over 1gb NICs)

This creates an archive that does the following:

rsync (Everyone seems to like -z, but it is much slower for me)

• a: archive mode - rescursive, preserves owner, preserves permissions, preserves modification times, preserves group, copies symlinks as symlinks, preserves device files.
• H: preserves hard-links
• A: preserves ACLs

ChrisWills

# GNU Screen - main configuration file 
# All other .screenrc files will source this file to inherit settings.
# Author: Christian Wills - cwills.sys@gmail.com

# Allow bold colors - necessary for some reason
attrcolor b ".I"

# Tell screen how to set colors. AB = background, AF=foreground
termcapinfo xterm 'Co#256:AB=\E[48;5;%dm:AF=\E[38;5;%dm'