stacktrace

2014-11-03 16:09:55,084 INFO  [        ome.services.util.ServiceHandler] (rver-11233)  Rslt:	(ome.model.core.PlaneInfo:Id_1003590, ome.model.core.PlaneInfo:Id_1003591, ome.model.core.PlaneInfo:Id_1003592, ... 56 more)
2014-11-03 16:09:57,268 INFO  [        ome.services.util.ServiceHandler] (rver-11240)  Meth:	interface ome.api.StatefulServiceInterface.close
2014-11-03 16:09:57,268 INFO  [        ome.services.util.ServiceHandler] (rver-11240)  Args:	()
2014-11-03 16:09:57,296 DEBUG [                   loci.formats.Memoizer] (rver-11240) loaded memo file: /mnt/sbsomero/OMERO.data/BioFormatsCache/mnt/sbsomero/OMERO.data/ManagedRepository/bharker_6/2014-09/24/17-20-53.453/.U2OS_GFP-EB3_mCherry-CenpA_MCAK-RNAi_.nd.bfmemo (583370 bytes)
2014-11-03 16:09:57,296 DEBUG [                   loci.formats.Memoizer] (rver-11240) start[1415030997268] time[27] tag[loci.formats.Memoizer.loadMemo]
2014-11-03 16:09:57,296 DEBUG [                   loci.formats.Memoizer] (rver-11240) start[1415030997268] time[28] tag[loci.formats.Memoizer.setId]
2014-11-03 16:09:57,296 INFO  [                 org.perf4j.TimingLogger] (rver-11240) start[1415030997268] time[28] tag[omero.call.success.ome.services.RenderingBean.close]
2014-11-03 16:09:57,296 INFO  [        ome.services.util.ServiceHandler] (rver-11240)  Rslt:	null
2014-11-03 16:09:57,297 INFO  [                      omero.cmd.SessionI] (rver-11240) Unregistered servant:3a07ed99-198f-43d5-a0bb-77eae392dab3/b7e67d49-a231-46c8-b107-8ccae49cf5c3omero.api.RenderingEngine(omero.api._RenderingEngineTie@658e20dd)
2014-11-03 16:09:59,950 INFO  [                      omero.cmd.SessionI] (rver-11235) Added servant to adapter: 3a07ed99-198f-43d5-a0bb-77eae392dab3/a2bdd6e5-2879-4cf7-867c-158ea6b8381domero.api.RawPixelsStore(omero.api._RawPixelsStoreTie@28dd63d2)
2014-11-03 16:09:59,951 INFO  [        ome.services.util.ServiceHandler] (rver-11229)  Meth:	interface ome.api.IMetadata.loadAnnotations
2014-11-03 16:09:59,967 INFO  [        ome.services.util.ServiceHandler] (rver-11241)  Meth:	interface ome.api.IMetadata.loadAnnotations
2014-11-03 16:09:59,964 INFO  [        ome.services.util.ServiceHandler] (rver-11238)  Meth:	interface ome.api.RawPixelsStore.setPixelsId
2014-11-03 16:09:59,971 INFO  [        ome.services.util.ServiceHandler] (rver-11238)  Args:	[15225, true]
2014-11-03 16:09:59,971 INFO  [        ome.services.util.ServiceHandler] (rver-11229)  Args:	[class ome.model.core.Image, (15275), (), (), PARAMS]
2014-11-03 16:09:59,971 INFO  [        ome.services.util.ServiceHandler] (rver-11241)  Args:	[class ome.model.core.Image, (15275), (), (), PARAMS]
2014-11-03 16:09:59,973 INFO  [         ome.security.basic.EventHandler] (rver-11229)  Auth:	user=2,group=3,event=null(User),sess=3a07ed99-198f-43d5-a0bb-77eae392dab3
2014-11-03 16:09:59,973 INFO  [         ome.security.basic.EventHandler] (rver-11238)  Auth:	user=2,group=3,event=null(User),sess=3a07ed99-198f-43d5-a0bb-77eae392dab3
2014-11-03 16:09:59,977 INFO  [         ome.security.basic.EventHandler] (rver-11241)  Auth:	user=2,group=3,event=null(User),sess=3a07ed99-198f-43d5-a0bb-77eae392dab3
2014-11-03 16:09:59,979 INFO  [             ome.io.nio.FilePathResolver] (rver-11238) Metadata only file, resulting path: /mnt/sbsomero/OMERO.data/ManagedRepository/bharker_6/2014-09/24/18-32-59.980/U2OS_GFP-EB3_mCherry-CenpA_MCAK-RNAi_WT_17.nd
2014-11-03 16:10:00,044 WARN  [     loci.common.RandomAccessInputStream] (rver-11238) Failed to reopen file
java.io.FileNotFoundException: /localdisk/omero/OMERO.data/ManagedRepository/bharker_6/2014-09/24/18-32-59.980/U2OS_GFP-EB3_mCherry-CenpA_MCAK-RNAi_WT_17_w2TIRF 561_t56.TIF (No such file or directory)
	at java.io.RandomAccessFile.open(Native Method) ~[na:1.7.0_25]
	at java.io.RandomAccessFile.<init>(RandomAccessFile.java:233) ~[na:1.7.0_25]
	at loci.common.NIOFileHandle.<init>(NIOFileHandle.java:127) ~[formats-common.jar:na]
	at loci.common.NIOFileHandle.<init>(NIOFileHandle.java:143) ~[formats-common.jar:na]
	at loci.common.NIOFileHandle.<init>(NIOFileHandle.java:152) ~[formats-common.jar:na]
	at loci.common.Location.getHandle(Location.java:324) ~[formats-common.jar:na]
	at loci.common.Location.getHandle(Location.java:294) ~[formats-common.jar:na]
	at loci.common.Location.getHandle(Location.java:284) ~[formats-common.jar:na]
	at loci.common.Location.getHandle(Location.java:274) ~[formats-common.jar:na]
	at loci.common.RandomAccessInputStream.read(RandomAccessInputStream.java:520) ~[formats-common.jar:na]
	at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:363) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.DefaultSerializers$KryoSerializableSerializer.read(DefaultSerializers.java:355) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:729) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:338) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.DefaultArraySerializers$ObjectArraySerializer.read(DefaultArraySerializers.java:293) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:648) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer$ObjectField.read(FieldSerializer.java:605) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:221) ~[kryo.jar:na]
	at com.esotericsoftware.kryo.Kryo.readObject(Kryo.java:626) ~[kryo.jar:na]
	at loci.formats.Memoizer$KryoDeser.loadReader(Memoizer.java:137) ~[formats-bsd.jar:na]
	at loci.formats.Memoizer.loadMemo(Memoizer.java:666) ~[formats-bsd.jar:na]
	at loci.formats.Memoizer.setId(Memoizer.java:513) ~[formats-bsd.jar:na]
	at ome.io.bioformats.BfPixelsWrapper.<init>(BfPixelsWrapper.java:51) ~[romio.jar:na]
	at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:73) ~[romio.jar:na]
	at ome.io.bioformats.BfPixelBuffer.setSeries(BfPixelBuffer.java:109) ~[romio.jar:na]
	at ome.io.nio.PixelsService.createBfPixelBuffer(PixelsService.java:806) ~[romio.jar:na]
	at ome.io.nio.PixelsService._getPixelBuffer(PixelsService.java:577) ~[romio.jar:na]
	at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:495) ~[romio.jar:na]
	at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:272) ~[server.jar:na]
	at sun.reflect.GeneratedMethodAccessor1021.invoke(Unknown Source) ~[na:na]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_25]
	at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_25]
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at ome.security.basic.EventHandler.invoke(EventHandler.java:154) ~[server.jar:na]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218) ~[server.jar:na]
	at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202) ~[server.jar:na]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) ~[org.springframework.transaction.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:241) ~[server.jar:na]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116) ~[server.jar:na]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at com.sun.proxy.$Proxy96.setPixelsId(Unknown Source) ~[na:na]
	at sun.reflect.GeneratedMethodAccessor1021.invoke(Unknown Source) ~[na:na]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_25]
	at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_25]
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98) ~[server.jar:na]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) ~[blitz.jar:na]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at com.sun.proxy.$Proxy96.setPixelsId(Unknown Source) ~[na:na]
	at sun.reflect.GeneratedMethodAccessor1646.invoke(Unknown Source) ~[na:na]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_25]
	at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_25]
	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) ~[blitz.jar:na]
	at ome.services.throttling.Callback.run(Callback.java:56) ~[blitz.jar:na]
	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) ~[blitz.jar:na]
	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149) ~[blitz.jar:na]
	at ome.services.blitz.impl.RawPixelsStoreI.setPixelsId_async(RawPixelsStoreI.java:194) ~[blitz.jar:na]
	at sun.reflect.GeneratedMethodAccessor1645.invoke(Unknown Source) ~[na:na]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_25]
	at java.lang.reflect.Method.invoke(Method.java:606) ~[na:1.7.0_25]
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at omero.cmd.CallContext.invoke(CallContext.java:78) ~[blitz.jar:na]
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) ~[org.springframework.aop.jar:3.0.1.RELEASE-A]
	at com.sun.proxy.$Proxy97.setPixelsId_async(Unknown Source) ~[na:na]
	at omero.api._RawPixelsStoreTie.setPixelsId_async(_RawPixelsStoreTie.java:297) ~[blitz.jar:na]
	at omero.api._RawPixelsStoreDisp.___setPixelsId(_RawPixelsStoreDisp.java:686) ~[blitz.jar:na]
	at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1635) ~[blitz.jar:na]
	at IceInternal.Incoming.invoke(Incoming.java:159) ~[ice.jar:na]
	at Ice.ConnectionI.invokeAll(ConnectionI.java:2357) ~[ice.jar:na]
	at Ice.ConnectionI.dispatch(ConnectionI.java:1208) ~[ice.jar:na]
	at Ice.ConnectionI.message(ConnectionI.java:1163) ~[ice.jar:na]
	at IceInternal.ThreadPool.run(ThreadPool.java:302) ~[ice.jar:na]
	at IceInternal.ThreadPool.access$300(ThreadPool.java:12) ~[ice.jar:na]
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:643) ~[ice.jar:na]
	at java.lang.Thread.run(Thread.java:724) ~[na:1.7.0_25]
2014-11-03 16:10:00,049 DEBUG [                   loci.formats.Memoizer] (rver-11238) loaded memo file: /mnt/sbsomero/OMERO.data/BioFormatsCache/mnt/sbsomero/OMERO.data/ManagedRepository/bharker_6/2014-09/24/18-32-59.980/.U2OS_GFP-EB3_mCherry-CenpA_MCAK-RNAi_WT_17.nd.bfmemo (605266 bytes)