example of new phylomatic function - getting trees from R.

newphylomaticfxn.r

# Example of new phylomatic
install_github('taxize_', 'ropensci', branch="phylomatic_fix")
library(taxize)

dat_ <- c("Amylotheca_subumbellata","Impatiens_davidi","Gonocarpus_leptothecus","Calochortus_argillosus","Gagea_sarmentosa","Lilium_lankongense","Cephalanthera_rubra","Bicuiba_oleifera","Guatteria_dolichopoda","Iteadaphne_caudata")

tree <- get_phylomatic_tree(taxa = dat_)
> tree

Phylogenetic tree with 10 tips and 9 internal nodes.

Tip labels:
	Amylotheca_subumbellata, Impatiens_davidi, Gonocarpus_leptothecus, Calochortus_argillosus, Gagea_sarmentosa, Lilium_lankongense, ...

Rooted; no branch lengths.

plot(tree)

Here's the output image: 

https://raw.github.com/SChamberlain/work/master/other/Rplot.png