Sean Smith sean-smith

COVID-19 AWS HPC Cluster

To deploy, click:

Region	Stack
us-east-1	[](https://us-east-1.console.aws.amazon.com/cloudformation/home?region=us-east-1#/stacks/create/template?stackName=AWS-HPC-Quickstart&templateURL=https://covid19hpc-quickstart.s3.amazonaws.com/cf

To use AWS ParallelCluster in a specific Availibility Zone, do the following:

This guide will help you setup a SPOT-based multi-instance type cluster. In order to accomplish this, we make a few assumptions:

a. Instances share the same number of vcpus, in this case it's all 96 vcpus:

Tested on Amazon Linux 2

On all AWS ParallelCluster clusters /opt/intel is already shared out via NFS:

$ showmount -e
Export list for ip-172-31-41-183:

# make sure you have pcluster installed
$ pcluster list --color

First setup yum to get the right repo:

tee > /tmp/oneAPI.repo << EOF
[oneAPI]
name=Intel(R) oneAPI repository
baseurl=https://yum.repos.intel.com/oneapi
enabled=1

aws s3 cp --acl public-read spack.sh s3://[bucket]

[cluster mycluster]

	import argparse
	import boto3


	class ClusterDestroyer:
	"""Destroy all ParallelCluster clusters in a given region."""

	def __init__(self, region, dryrun):
	self.__created_clusters = []
	self.region = region

	import argparse
	import boto3


	class ClusterDestroyer:
	"""Destroy all ParallelCluster clusters in a given region."""

	def __init__(self, region, dryrun):
	self.__created_clusters = []
	self.region = region