Skip to content

Instantly share code, notes, and snippets.

@seandavi
Created August 13, 2016 15:44
Show Gist options
  • Save seandavi/02baa017c34205327ac0dfeeb4a67860 to your computer and use it in GitHub Desktop.
Save seandavi/02baa017c34205327ac0dfeeb4a67860 to your computer and use it in GitHub Desktop.
task fastqc {
File fastq
command {
fastqc ${fastq}
}
output {
Array[File] results = glob("*html")
}
runtime
{
docker : "seandavi/fastqc"
memory: "2 GB"
defaultDisks: "local-disk 10 SSD"
}
}
workflow test {
call fastqc
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment