Nick Semenkovich semenko

☕

Thoroughly Caffeinated

Tiny Human Wrangler | Physician Scientist (MD, PhD) | @mcwdsi via @mit / Brigham and Women's / WashU

cowboy / github_post_recieve.php

Created October 11, 2010 02:04

GitHub PHP webhook to auto-pull on repo push

	<?php

	// Use in the "Post-Receive URLs" section of your GitHub repo.

	if ( $_POST['payload'] ) {
	shell_exec( 'cd /srv/www/git-repo/ && git reset --hard HEAD && git pull' );
	}

	?>hi

plentz / nginx.conf

Last active November 16, 2024 14:10

Best nginx configuration for improved security(and performance)

	# to generate your dhparam.pem file, run in the terminal
	openssl dhparam -out /etc/nginx/ssl/dhparam.pem 2048

stephenturner / deseq2-analysis-template.R

Created July 30, 2014 12:20

Template for analysis with DESeq2

	## RNA-seq analysis with DESeq2
	## Stephen Turner, @genetics_blog

	# RNA-seq data from GSE52202
	# http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse52202. All patients with
	# ALS, 4 with C9 expansion ("exp"), 4 controls without expansion ("ctl")

	# Import & pre-process ----------------------------------------------------

	# Import data from featureCounts

semenko / dmidecode

Last active October 26, 2021 02:57

Dell XPS 13 2015 model 9343 on Ubuntu 15.04, dmidecode, lsusb, lspci

pgm / correlation_from_csv.py

Created September 22, 2020 02:30

Script based on code from the DepMap portal code to compute the top N pearson correlations and write to a CSV file

	import argparse
	import sqlite3
	import sys
	import numpy as np
	import pandas as pd


	def main():
	parser = argparse.ArgumentParser()
	parser.add_argument("in_csv_0")