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rdkit (rdkit/rdkit/rdkit) on macOS 10.13.4 - Homebrew build logs
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| Homebrew build logs for rdkit/rdkit/rdkit on macOS 10.13.4 | |
| Build date: 2018-03-31 19:46:06 |
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| HOMEBREW_VERSION: 1.5.13 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 0f4e22e28d3b65a6c8dbb0f270bb6d262a2429d6 | |
| Last commit: 3 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 41dd22806a81a5b27ba0d4d09dc90e4275803a19 | |
| Core tap last commit: 5 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| CPU: octa-core 64-bit skylake | |
| Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby | |
| Clang: 9.1 build 902 | |
| Git: 2.15.1 => /Applications/Xcode.app/Contents/Developer/usr/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Perl: /usr/bin/perl | |
| Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/bin/python3.6 | |
| Ruby: /Users/david/.rvm/rubies/ruby-2.3.0/bin/ruby | |
| Java: 1.8.0_91 | |
| macOS: 10.13.4-x86_64 | |
| Xcode: 9.3 | |
| CLT: 9.3.0.0.1.1521514116 | |
| X11: 2.7.9 => /opt/X11 |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: /usr/local/share/python is not needed in PATH. | |
| Formerly homebrew put Python scripts you installed via `pip` or `pip3` | |
| (or `easy_install`) into that directory above but now it can be removed | |
| from your PATH variable. | |
| Python scripts will now install into /usr/local/bin. | |
| You can delete anything, except 'Extras', from the /usr/local/share/python | |
| (and /usr/local/share/python@2) dir and install affected Python packages | |
| anew with `pip install --upgrade`. | |
| Warning: Unbrewed dylibs were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected dylibs: | |
| /usr/local/lib/libXyDelta.0.dylib | |
| Warning: Unbrewed .la files were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected .la files: | |
| /usr/local/lib/libXyDelta.la | |
| Warning: Unbrewed static libraries were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected static libraries: | |
| /usr/local/lib/libXyDelta.a | |
| Warning: Some directories in your path end in a slash. | |
| Directories in your path should not end in a slash. This can break other | |
| doctor checks. The following directories should be edited: | |
| /Users/david/Library/Android/sdk/platform-tools/ | |
| Warning: Your XQuartz (2.7.9) is outdated. | |
| Please install XQuartz 2.7.11 (or delete the current version). | |
| XQuartz can be updated using Homebrew-Cask by running | |
| brew cask reinstall xquartz | |
| Warning: Broken symlinks were found. Remove them with `brew prune`: | |
| /usr/local/bin/apm | |
| /usr/local/bin/atom | |
| /usr/local/etc/bash_completion.d/_brew_services | |
| Warning: Use r instead of deprecated homebrew/science/r | |
| Warning: Some installed formulae are missing dependencies. | |
| You should `brew install` the missing dependencies: | |
| brew install brotli libidn2 libmikmod libunistring | |
| Run `brew missing` for more details. |
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| rdkit/rdkit/rdkit --with-avalon --with-inchi --with-postgresql --with-python3 |
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| Formula: rdkit | |
| Tap: rdkit/rdkit | |
| Path: /usr/local/Homebrew/Library/Taps/rdkit/homebrew-rdkit/Formula/rdkit.rb |
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| 2018-03-31 19:38:09 +0300 | |
| cmake | |
| -DCMAKE_C_FLAGS_RELEASE=-DNDEBUG | |
| -DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG | |
| -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/rdkit/HEAD-d72e1ec | |
| -DCMAKE_BUILD_TYPE=Release | |
| -DCMAKE_FIND_FRAMEWORK=LAST | |
| -DCMAKE_VERBOSE_MAKEFILE=ON | |
| -Wno-dev | |
| -DRDK_INSTALL_INTREE=OFF | |
| -DRDK_BUILD_AVALON_SUPPORT=ON | |
| -DRDK_BUILD_PGSQL=ON | |
| -DRDK_BUILD_INCHI_SUPPORT=ON | |
| -DRDK_BUILD_CPP_TESTS=OFF | |
| -DPYTHON_EXECUTABLE='/usr/local/opt/python/bin/python3' | |
| -DPYTHON_INCLUDE_DIR='/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m' | |
| -DPYTHON_LIBRARY='/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python' | |
| -DPYTHON_NUMPY_INCLUDE_PATH='/usr/local/lib/python3.6/site-packages/numpy/core/include' | |
| . | |
| -- The C compiler identification is AppleClang 9.1.0.9020039 | |
| -- The CXX compiler identification is AppleClang 9.1.0.9020039 | |
| -- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang | |
| -- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang -- works | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ | |
| -- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -- works | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Check if the system is big endian | |
| -- Searching 16 bit integer | |
| -- Looking for sys/types.h | |
| -- Looking for sys/types.h - found | |
| -- Looking for stdint.h | |
| -- Looking for stdint.h - found | |
| -- Looking for stddef.h | |
| -- Looking for stddef.h - found | |
| -- Check size of unsigned short | |
| -- Check size of unsigned short - done | |
| -- Using unsigned short | |
| -- Check if the system is big endian - little endian | |
| -- Could NOT find InChI in system locations (missing: INCHI_INCLUDE_DIR) | |
| Downloading http://www.inchi-trust.org/download/105/INCHI-1-SRC.zip... | |
| -- Found PythonInterp: /usr/local/opt/python/bin/python3 (found version "3.6.5") | |
| -- Found PythonLibs: /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python (found version "3.6.5") | |
| Python Install directory /usr/local/Cellar/rdkit/HEAD-d72e1ec/lib/python3.6/site-packages | |
| -- Boost version: 1.66.0 | |
| -- Found the following Boost libraries: | |
| -- regex | |
| == OSX: CHECKING for libc++ | |
| == BOOST USES LIBC++ | |
| -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") | |
| -- Looking for pthread.h | |
| -- Looking for pthread.h - found | |
| -- Looking for pthread_create | |
| -- Looking for pthread_create - found | |
| -- Found Threads: TRUE | |
| -- Boost version: 1.66.0 | |
| -- Found the following Boost libraries: | |
| -- thread | |
| -- system | |
| -- chrono | |
| -- date_time | |
| -- atomic | |
| -- Boost version: 1.66.0 | |
| -- Found the following Boost libraries: | |
| -- serialization | |
| -- Found PostgreSQL: /usr/local/lib/libpq.dylib (found version "10.3") | |
| == Using strict rotor definition | |
| Downloading http://sourceforge.net/projects/avalontoolkit/files/AvalonToolkit_1.2/AvalonToolkit_1.2.0.source.tar... | |
| == Updating Filters.cpp from pains file | |
| == Done updating pains files | |
| ===================================================================== | |
| After building, check | |
| /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/pgsql_install.sh | |
| for correctness of installation paths. If everything is OK, gain | |
| administrator privileges, stop the PostgreSQL service, run | |
| /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/pgsql_install.sh | |
| to install the PostgreSQL RDKit cartridge, then start again | |
| the PostgreSQL service | |
| ===================================================================== | |
| -- Configuring done | |
| -- Generating done | |
| -- Build files have been written to: /tmp/rdkit-20180331-9259-17ns1bi |
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| clang called with: CMakeCCompilerId.c | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang CMakeCCompilerId.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: CMakeCXXCompilerId.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ CMakeCXXCompilerId.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o CMakeFiles/cmTC_de780.dir/testCCompiler.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/CMakeTmp/testCCompiler.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -o CMakeFiles/cmTC_de780.dir/testCCompiler.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/CMakeTmp/testCCompiler.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_de780.dir/testCCompiler.c.o -o cmTC_de780 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_de780.dir/testCCompiler.c.o -o cmTC_de780 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o CMakeFiles/cmTC_3ea57.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.11.0/share/cmake/Modules/CMakeCCompilerABI.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -o CMakeFiles/cmTC_3ea57.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.11.0/share/cmake/Modules/CMakeCCompilerABI.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_3ea57.dir/CMakeCCompilerABI.c.o -o cmTC_3ea57 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_3ea57.dir/CMakeCCompilerABI.c.o -o cmTC_3ea57 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -std=c11 -o CMakeFiles/cmTC_93b32.dir/feature_tests.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -std=c11 -o CMakeFiles/cmTC_93b32.dir/feature_tests.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_93b32.dir/feature_tests.c.o -o cmTC_93b32 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_93b32.dir/feature_tests.c.o -o cmTC_93b32 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -std=c99 -o CMakeFiles/cmTC_e5d55.dir/feature_tests.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -std=c99 -o CMakeFiles/cmTC_e5d55.dir/feature_tests.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_e5d55.dir/feature_tests.c.o -o cmTC_e5d55 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_e5d55.dir/feature_tests.c.o -o cmTC_e5d55 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -std=c90 -o CMakeFiles/cmTC_b9069.dir/feature_tests.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -std=c90 -o CMakeFiles/cmTC_b9069.dir/feature_tests.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_b9069.dir/feature_tests.c.o -o cmTC_b9069 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_b9069.dir/feature_tests.c.o -o cmTC_b9069 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| superenv executed: clang -pipe -w -Os -march=native -o CMakeFiles/cmTC_f21f3.dir/TestEndianess.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/CMakeTmp/TestEndianess.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f21f3.dir/TestEndianess.c.o -o cmTC_f21f3 | |
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| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f21f3.dir/TestEndianess.c.o -o cmTC_f21f3 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o CMakeFiles/cmTC_c62a3.dir/CheckIncludeFile.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/CMakeTmp/CheckIncludeFile.c | |
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| clang called with: -o CMakeFiles/cmTC_cbd85.dir/CheckSymbolExists.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/CMakeTmp/CheckSymbolExists.c | |
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| superenv executed: clang -pipe -w -Os -march=native -o CMakeFiles/cmTC_cbd85.dir/CheckSymbolExists.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/CMakeTmp/CheckSymbolExists.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
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| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_cbd85.dir/CheckSymbolExists.c.o -o cmTC_cbd85 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| 2018-03-31 19:38:26 +0300 | |
| make | |
| -j8 | |
| /usr/local/Cellar/cmake/3.11.0/bin/cmake -H/tmp/rdkit-20180331-9259-17ns1bi -B/tmp/rdkit-20180331-9259-17ns1bi --check-build-system CMakeFiles/Makefile.cmake 0 | |
| /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_progress_start /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles /tmp/rdkit-20180331-9259-17ns1bi/CMakeFiles/progress.marks | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/Inchi_static.dir/build.make External/INCHI-API/CMakeFiles/Inchi_static.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/Inchi.dir/build.make External/INCHI-API/CMakeFiles/Inchi.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/AvalonLib_static.dir/build.make External/AvalonTools/CMakeFiles/AvalonLib_static.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/avalon_clib_static.dir/build.make External/AvalonTools/CMakeFiles/avalon_clib_static.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/avalon_clib.dir/build.make External/AvalonTools/CMakeFiles/avalon_clib.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/CMakeFiles/AvalonLib_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/CMakeFiles/Inchi_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/CMakeFiles/avalon_clib_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/CMakeFiles/Inchi.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/CMakeFiles/avalon_clib.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target inchi_support | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E copy /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/python/inchi.py /tmp/rdkit-20180331-9259-17ns1bi/rdkit/Chem/inchi.py | |
| [ 0%] Built target inchi_support | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target avalon_clib | |
| Scanning dependencies of target avalon_clib_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/avalon_clib.dir/build.make External/AvalonTools/CMakeFiles/avalon_clib.dir/build | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/avalon_clib_static.dir/build.make External/AvalonTools/CMakeFiles/avalon_clib_static.dir/build | |
| [ 0%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/layout.c.o | |
| [ 1%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/layout.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/layout.c | |
| Scanning dependencies of target Inchi | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/Inchi.dir/build.make External/INCHI-API/CMakeFiles/Inchi.dir/build | |
| Scanning dependencies of target Inchi_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/Inchi_static.dir/build.make External/INCHI-API/CMakeFiles/Inchi_static.dir/build | |
| [ 1%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichi_bns.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichi_bns.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichi_bns.c | |
| [ 1%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichi_bns.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichi_bns.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichi_bns.c | |
| Scanning dependencies of target RDGeneral_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build | |
| Scanning dependencies of target RDGeneral | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build | |
| Scanning dependencies of target AvalonLib_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/AvalonLib_static.dir/build.make External/AvalonTools/CMakeFiles/AvalonLib_static.dir/build | |
| [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/Invariant.cpp | |
| [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/Invariant.cpp | |
| Scanning dependencies of target RDInchiLib_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/build | |
| [ 1%] Building CXX object External/AvalonTools/CMakeFiles/AvalonLib_static.dir/AvalonTools.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/AvalonLib_static.dir/AvalonTools.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/AvalonTools.cpp | |
| [ 1%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/inchi.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDInchiLib_static.dir/inchi.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/inchi.cpp | |
| [ 1%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/symboltable.c | |
| [ 1%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/symboltable.c | |
| [ 1%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/patclean.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/patclean.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/patclean.c | |
| [ 1%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/patclean.c | |
| [ 1%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichi_io.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichi_io.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichi_io.c | |
| [ 2%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichi_io.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichi_io.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichi_io.c | |
| [ 2%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichican2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichican2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichican2.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichican2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichican2.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/utilities.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/utilities.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/utilities.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/utilities.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/types.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/types.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/types.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symbol_lists.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/symbol_lists.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/symbol_lists.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/stereo.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/stereo.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichicano.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichicano.c | |
| [ 3%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichicano.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichicano.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichicano.c | |
| [ 3%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/set.c | |
| [ 3%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/set.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/set.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/perceive.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/perceive.c | |
| [ 4%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichicans.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichicans.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichicans.c | |
| [ 4%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichicans.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichicans.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichicans.c | |
| [ 5%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/local.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/local.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/graph.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/graph.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/utils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/utils.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/geometry.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichierr.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichierr.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/RDLog.cpp | |
| [ 5%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiisot.c.o | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiisot.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiisot.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiisot.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiisot.c | |
| [ 5%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/forio.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/forio.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/forio.c | |
| [ 5%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimak2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimak2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimak2.c | |
| [ 5%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimak2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimak2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimak2.c | |
| [ 5%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/depictutil.c | |
| [ 5%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/depictutil.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/depictutil.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/depictutil.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/denormal.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/denormal.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/denormal.c | |
| [ 5%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimake.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimake.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimake.c | |
| [ 5%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimake.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimake.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimake.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/casutils.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/casutils.c | |
| [ 5%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/casutils.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/ssmatch.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/ssmatch.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/ssmatch.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/ssmatch.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/RDLog.cpp | |
| [ 6%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap1.c.o | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimap1.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimap1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimap1.c | |
| [ 7%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap2.c.o | |
| [ 7%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimap2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimap2.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimap2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimap2.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost_static.dir/build.make Code/RDBoost/CMakeFiles/RDBoost_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/CMakeFiles/RDBoost_static.dir/DependInfo.cmake --color= | |
| [ 7%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/Dict.cpp | |
| [ 7%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/rtutils.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/rtutils.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/rtutils.c | |
| [ 7%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/rtutils.c | |
| [ 7%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap4.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimap4.c | |
| [ 7%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/smi2mol.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimap4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichimap4.c | |
| Scanning dependencies of target RDBoost_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost_static.dir/build.make Code/RDBoost/CMakeFiles/RDBoost_static.dir/build | |
| [ 9%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/smi2mol.c | |
| [ 9%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost_static.dir/Wrap.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost_static.dir/Wrap.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/Dict.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/RDInchiLib_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib_static.dir/link.txt --verbose=1 | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/LocaleSwitcher.cpp | |
| [ 10%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichinorm.c.o | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichinorm.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichinorm.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichinorm.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichinorm.c | |
| [ 10%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/didepict.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/didepict.c | |
| [ 10%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/didepict.c | |
| [ 10%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiparm.c.o | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiparm.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiparm.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiparm.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiparm.c | |
| [ 11%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/versions.cpp | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/pattern.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/pattern.c | |
| [ 11%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt1.c.o | |
| [ 11%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt1.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiprt1.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiprt1.c | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/pattern.c | |
| [ 11%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/LocaleSwitcher.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/LocaleSwitcher.cpp | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/canonizer.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/canonizer.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/canonizer.c | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/canonizer.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs_static.dir/build.make Code/DataStructs/CMakeFiles/DataStructs_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/CMakeFiles/DataStructs_static.dir/DependInfo.cmake --color= | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/aacheck.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/aacheck.c | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/aacheck.c | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/fixcharges.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/fixcharges.c | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/fixcharges.c | |
| [ 11%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiprt2.c | |
| [ 11%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiprt2.c | |
| Scanning dependencies of target DataStructs_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs_static.dir/build.make Code/DataStructs/CMakeFiles/DataStructs_static.dir/build | |
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| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitRDGeneral.1.dylib CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 11%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/BitVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/BitVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/BitVect.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.1.dylib ../../lib/libRDKitRDGeneral.dylib | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/struchk.c | |
| [ 11%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o | |
| [ 11%] Built target RDGeneral | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/struchk.c | |
| [ 11%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiprt3.c | |
| [ 11%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/SparseBitVect.cpp | |
| [ 11%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiprt3.c | |
| [ 12%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/reaccsio.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/reaccsio.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/reaccsio.c | |
| [ 12%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/reaccsio.c | |
| [ 13%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/versions.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/versions.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral/versions.cpp | |
| [ 13%] Linking CXX static library libRDKitRDGeneral_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/RDGeneral_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDGeneral && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitRDGeneral_static.a CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o CMakeFiles/RDGeneral_static.dir/types.cpp.o CMakeFiles/RDGeneral_static.dir/utils.cpp.o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o CMakeFiles/RDGeneral_static.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral_static.dir/versions.cpp.o | |
| /usr/bin/ranlib libRDKitRDGeneral_static.a | |
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| [ 13%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiqueu.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiqueu.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiqueu.c | |
| [ 13%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/hashcode.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/hashcode.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/hashcode.c | |
| [ 14%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common/hashcode.c | |
| [ 14%] Linking C static library libRDKitavalon_clib_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/avalon_clib_static.dir/cmake_clean_target.cmake | |
| [ 14%] Linking C shared library ../../lib/libRDKitavalon_clib.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/avalon_clib.dir/link.txt --verbose=1 | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/avalon_clib_static.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang -Wno-array-bounds -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitavalon_clib.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitavalon_clib.1.dylib CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/utilities.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/ssmatch.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o | |
| /usr/bin/ar qc libRDKitavalon_clib_static.a CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/layout.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/patclean.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/utilities.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symbol_lists.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/stereo.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/set.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/perceive.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/local.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/graph.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/geometry.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/forio.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/depictutil.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/denormal.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/casutils.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/ssmatch.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/rtutils.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/didepict.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/pattern.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/canonizer.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/aacheck.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/fixcharges.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/reaccsio.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/hashcode.c.o | |
| /usr/bin/ranlib libRDKitavalon_clib_static.a | |
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| [ 14%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiqueu.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiqueu.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiqueu.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitavalon_clib.2018.03.1.dev1.dylib ../../lib/libRDKitavalon_clib.1.dylib ../../lib/libRDKitavalon_clib.dylib | |
| [ 14%] Built target avalon_clib | |
| [ 15%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiread.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiread.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiread.c | |
| [ 15%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/ExplicitBitVect.cpp | |
| [ 15%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiread.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiread.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiread.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/DependInfo.cmake --color= | |
| [ 15%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/Utils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/Utils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Utils.cpp | |
| Scanning dependencies of target RDGeometryLib_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/build | |
| [ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/point.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/point.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/point.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDBoost_static.dir/link.txt --verbose=1 | |
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| [ 16%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiring.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiring.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiring.c | |
| [ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Transform2D.cpp | |
| [ 17%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiring.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiring.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichiring.c | |
| [ 17%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/base64.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/base64.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/base64.cpp | |
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| [ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Transform3D.cpp | |
| Scanning dependencies of target Alignment_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/build | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/AlignPoints.cpp | |
| [ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/UniformGrid3D.cpp | |
| [ 17%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr1.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr1.c | |
| [ 17%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr1.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr1.c | |
| [ 18%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/BitOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/BitOps.cpp | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr2.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr2.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp | |
| [ 18%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/DiscreteDistMat.cpp | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr3.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= | |
| [ 18%] Linking CXX static library libRDKitAlignment_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Alignment_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Alignment_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitAlignment_static.a CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o | |
| Scanning dependencies of target EigenSolvers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build | |
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| [ 18%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/DiscreteValueVect.cpp | |
| [ 18%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/DependInfo.cmake --color= | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr3.c | |
| [ 18%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/GridUtils.cpp | |
| Scanning dependencies of target Optimizer_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build | |
| [ 18%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer/BFGSOpt.cpp | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr4.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr4.c | |
| [ 18%] Linking CXX static library libRDKitEigenSolvers_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/EigenSolvers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitEigenSolvers_static.a CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o | |
| /usr/bin/ranlib libRDKitEigenSolvers_static.a | |
| [ 18%] Built target EigenSolvers_static | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr4.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr4.c | |
| [ 18%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer/LinearSearch.cpp | |
| [ 18%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/FPBReader.cpp | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr5.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr5.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr5.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField_static.dir/build.make Code/ForceField/CMakeFiles/ForceField_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/CMakeFiles/ForceField_static.dir/DependInfo.cmake --color= | |
| [ 18%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitEigenSolvers.1.dylib CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../lib/libRDKitEigenSolvers.1.dylib ../../../lib/libRDKitEigenSolvers.dylib | |
| [ 18%] Built target EigenSolvers | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr6.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr6.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr6.c | |
| [ 18%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/MultiFPBReader.cpp | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr5.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr5.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr5.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DependInfo.cmake --color= | |
| [ 18%] Linking CXX static library libRDKitRDGeometryLib_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/RDGeometryLib_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitRDGeometryLib_static.a CMakeFiles/RDGeometryLib_static.dir/point.cpp.o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o | |
| /usr/bin/ranlib libRDKitRDGeometryLib_static.a | |
| [ 18%] Built target RDGeometryLib_static | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr6.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr6.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr6.c | |
| [ 18%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr7.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr7.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr7.c | |
| Scanning dependencies of target DistGeometry_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build | |
| [ 19%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichisort.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichisort.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichisort.c | |
| [ 19%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/DistGeomUtils.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend | |
| Scanning dependencies of target ForceField_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField_static.dir/build.make Code/ForceField/CMakeFiles/ForceField_static.dir/build | |
| [ 19%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr7.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr7.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichirvr7.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= | |
| [ 19%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichister.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichister.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichister.c | |
| [ 19%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/ForceField.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/ForceField.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/ForceField.cpp | |
| Scanning dependencies of target Catalogs | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/Catalog.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Optimizer_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Optimizer_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitOptimizer_static.a CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o | |
| /usr/bin/ranlib libRDKitOptimizer_static.a | |
| [ 21%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichisort.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichisort.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichisort.c | |
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| [ 21%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/TriangleSmooth.cpp | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichister.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichister.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichister.c | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichitaut.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichitaut.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichitaut.c | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichitaut.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichitaut.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ichitaut.c | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ikey_base26.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ikey_base26.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ikey_base26.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs_static.dir/build.make Code/Catalogs/CMakeFiles/Catalogs_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/CMakeFiles/Catalogs_static.dir/DependInfo.cmake --color= | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ikey_dll.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ikey_dll.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ikey_dll.c | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol2atom.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol2atom.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol2atom.c | |
| Scanning dependencies of target Catalogs_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs_static.dir/build.make Code/Catalogs/CMakeFiles/Catalogs_static.dir/build | |
| [ 22%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/Catalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/Catalog.cpp | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt1.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt1.c | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ikey_base26.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ikey_base26.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ikey_base26.c | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ikey_dll.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ikey_dll.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/ikey_dll.c | |
| [ 22%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt2.c | |
| [ 22%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/CatalogParams.cpp | |
| [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/AngleBend.cpp | |
| [ 23%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol2atom.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol2atom.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol2atom.c | |
| [ 24%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt3.c | |
| [ 25%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/DistViolationContrib.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol_static.dir/build.make Code/GraphMol/CMakeFiles/GraphMol_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/CMakeFiles/GraphMol_static.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/DataStructs_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DataStructs_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDataStructs_static.a CMakeFiles/DataStructs_static.dir/BitVect.cpp.o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs_static.dir/Utils.cpp.o CMakeFiles/DataStructs_static.dir/base64.cpp.o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/CatalogEntry.cpp | |
| [ 25%] Built target DataStructs_static | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/CatalogParams.cpp | |
| [ 25%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt1.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt1.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt1.c | |
| [ 25%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt4.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt4.c | |
| [ 25%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/ChiralViolationContrib.cpp | |
| [ 25%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt2.c | |
| [ 25%] Linking CXX shared library ../../lib/libRDKitCatalogs.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 25%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/readinch.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/readinch.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/readinch.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../lib/libRDKitCatalogs.1.dylib ../../lib/libRDKitCatalogs.dylib | |
| [ 25%] Built target Catalogs | |
| [ 25%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs/CatalogEntry.cpp | |
| [ 25%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt3.c | |
| [ 25%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi.c | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt4.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/mol_fmt4.c | |
| [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/BondStretch.cpp | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi2.c | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/readinch.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/readinch.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/readinch.c | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi3.c | |
| Scanning dependencies of target GraphMol_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol_static.dir/build.make Code/GraphMol/CMakeFiles/GraphMol_static.dir/build | |
| [ 26%] Linking CXX static library libRDKitCatalogs_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Catalogs_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Catalogs_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitCatalogs_static.a CMakeFiles/Catalogs_static.dir/Catalog.cpp.o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitCatalogs_static.a(Catalog.cpp.o) has no symbols | |
| /usr/bin/ranlib libRDKitCatalogs_static.a | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitCatalogs_static.a(Catalog.cpp.o) has no symbols | |
| [ 26%] Built target Catalogs_static | |
| [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/Nonbonded.cpp | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi.c | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi4.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi4.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/depend | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi2.c | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/DependInfo.cmake --color= | |
| [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Atom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Atom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Atom.cpp | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/sha2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/sha2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/sha2.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/DependInfo.cmake --color= | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi3.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi3.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi3.c | |
| Scanning dependencies of target Depictor_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build | |
| [ 26%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/RDDepictor.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/DistGeometry_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDistGeometry_static.a CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o | |
| /usr/bin/ranlib libRDKitDistGeometry_static.a | |
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| [ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/Inversion.cpp | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi4.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi4.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/runichi4.c | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/strutil.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/strutil.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/strutil.c | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/sha2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/sha2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/sha2.c | |
| Scanning dependencies of target SmilesParse_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmilesParse.cpp | |
| [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/QueryAtom.cpp | |
| [ 26%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/strutil.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/strutil.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/strutil.c | |
| [ 27%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_BASE/src/util.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/util.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/util.c | |
| [ 27%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/EmbeddedFrag.cpp | |
| [ 27%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ichilnct.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ichilnct.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ichilnct.c | |
| [ 27%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll.c | |
| [ 27%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/util.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/util.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src/util.c | |
| [ 27%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_a.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_a.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_a.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/TorsionAngle.cpp | |
| [ 28%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ichilnct.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ichilnct.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ichilnct.c | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_a2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_a2.c | |
| [ 28%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll.c | |
| [ 28%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_b.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_b.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_b.c | |
| [ 28%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_a.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_a.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_a.c | |
| [ 28%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_a2.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_a2.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_a2.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/DependInfo.cmake --color= | |
| [ 28%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_main.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_main.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_main.c | |
| [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmilesParseOps.cpp | |
| [ 29%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_builder.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_builder.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_builder.c | |
| [ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/QueryBond.cpp | |
| [ 29%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_b.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_b.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_b.c | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_mol.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_mol.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_mol.c | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_main.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_main.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/inchi_dll_main.c | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c | |
| Scanning dependencies of target FileParsers_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build | |
| [ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/DistanceConstraint.cpp | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_builder.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_builder.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_builder.c | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c | |
| [ 30%] Building C object External/INCHI-API/CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_status.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DInchi_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_status.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_status.c | |
| [ 30%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/Mol2FileParser.cpp | |
| [ 30%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/DepictUtils.cpp | |
| [ 31%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_mol.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_mol.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_mol.c | |
| [ 31%] Linking C shared library ../../lib/libRDKitInchi.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Inchi.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang -Wno-array-bounds -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitInchi.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitInchi.1.dylib CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichi_bns.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichi_io.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichican2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichicano.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichicans.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichierr.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiisot.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimak2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimake.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap1.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichimap4.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichinorm.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiparm.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt1.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiprt3.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiqueu.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiread.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichiring.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr1.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr3.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr4.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr5.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr6.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichirvr7.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichisort.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichister.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ichitaut.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ikey_base26.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/ikey_dll.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol2atom.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt1.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt3.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/mol_fmt4.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/readinch.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi3.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/runichi4.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/sha2.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/strutil.c.o CMakeFiles/Inchi.dir/src/INCHI_BASE/src/util.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ichilnct.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_a.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_a2.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_b.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/inchi_dll_main.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_builder.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_mol.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c.o CMakeFiles/Inchi.dir/src/INCHI_API/libinchi/src/ixa/ixa_status.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitInchi.2018.03.1.dev1.dylib ../../lib/libRDKitInchi.1.dylib ../../lib/libRDKitInchi.dylib | |
| [ 31%] Built target Inchi | |
| [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Bond.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Bond.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Bond.cpp | |
| [ 31%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c | |
| [ 31%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c | |
| [ 31%] Building C object External/INCHI-API/CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_status.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_status.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_API/libinchi/src/ixa/ixa_status.c | |
| [ 31%] Linking C static library libRDKitInchi_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Inchi_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Inchi_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitInchi_static.a CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichi_bns.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichi_io.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichican2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichicano.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichicans.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichierr.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiisot.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimak2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimake.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimap1.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimap2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichimap4.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichinorm.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiparm.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt1.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiprt3.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiqueu.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiread.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichiring.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr1.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr3.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr4.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr5.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr6.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichirvr7.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichisort.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichister.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ichitaut.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ikey_base26.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/ikey_dll.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol2atom.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt1.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt3.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/mol_fmt4.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/readinch.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi3.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/runichi4.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/sha2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/strutil.c.o CMakeFiles/Inchi_static.dir/src/INCHI_BASE/src/util.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ichilnct.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_a.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_a2.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_b.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/inchi_dll_main.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_builder.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_inchikey_builder.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_mol.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_inchi.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_read_mol.c.o CMakeFiles/Inchi_static.dir/src/INCHI_API/libinchi/src/ixa/ixa_status.c.o | |
| /usr/bin/ranlib libRDKitInchi_static.a | |
| [ 31%] Built target Inchi_static | |
| [ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/AngleConstraint.cpp | |
| [ 31%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/MolFileParser.cpp | |
| [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolOps.cpp | |
| [ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/TorsionConstraint.cpp | |
| [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmilesWrite.cpp | |
| [ 31%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/MolFileStereochem.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target SubstructMatch_static | |
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| [ 31%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct/SubstructMatch.cpp | |
| [ 31%] Linking CXX static library libRDKitDepictor_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Depictor_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Depictor_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDepictor_static.a CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o | |
| /usr/bin/ranlib libRDKitDepictor_static.a | |
| [ 31%] Built target Depictor_static | |
| [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmartsWrite.cpp | |
| [ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/PositionConstraint.cpp | |
| [ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/FindRings.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FindRings.cpp | |
| [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/Params.cpp | |
| [ 33%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct/SubstructUtils.cpp | |
| [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/AngleBend.cpp | |
| [ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ROMol.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ROMol.cpp | |
| [ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/CXSmilesOps.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/DependInfo.cmake --color= | |
| [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/BondStretch.cpp | |
| [ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/smarts.tab.cpp | |
| [ 33%] Linking CXX static library libRDKitSubstructMatch_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/SubstructMatch_static.dir/cmake_clean_target.cmake | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/DependInfo.cmake --color= | |
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| /usr/bin/ar qc libRDKitSubstructMatch_static.a CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o | |
| /usr/bin/ranlib libRDKitSubstructMatch_static.a | |
| [ 33%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/MolFileWriter.cpp | |
| [ 33%] Built target SubstructMatch_static | |
| [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/StretchBend.cpp | |
| Scanning dependencies of target ChemReactions_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/build | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/Reaction.cpp | |
| Scanning dependencies of target ChemTransforms_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/build | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms/ChemTransforms.cpp | |
| [ 33%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/smiles.tab.cpp | |
| [ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RWMol.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RWMol.cpp | |
| [ 34%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/MDLParser.cpp | |
| [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/OopBend.cpp | |
| [ 34%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp | |
| [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/TorsionAngle.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/DependInfo.cmake --color= | |
| [ 34%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/lex.yysmarts.cpp | |
| Scanning dependencies of target Subgraphs_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs/Subgraphs.cpp | |
| [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/Nonbonded.cpp | |
| [ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PeriodicTable.cpp | |
| [ 35%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms/MolFragmenter.cpp | |
| [ 35%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/DaylightParser.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/DependInfo.cmake --color= | |
| [ 35%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SDMolSupplier.cpp | |
| Scanning dependencies of target FilterCatalog_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/build | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/Filters.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Filters.cpp | |
| [ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/atomic_data.cpp | |
| [ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/lex.yysmiles.cpp | |
| [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/DistanceConstraint.cpp | |
| [ 35%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs/SubgraphUtils.cpp | |
| [ 35%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/ReactionPickler.cpp | |
| [ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/QueryOps.cpp | |
| [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/AngleConstraint.cpp | |
| [ 37%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SDWriter.cpp | |
| [ 37%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FilterCatalog.cpp | |
| [ 38%] Linking CXX static library libRDKitSmilesParse_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/SmilesParse_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitSmilesParse_static.a CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitChemTransforms_static.a CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o | |
| /usr/bin/ranlib libRDKitChemTransforms_static.a | |
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| [ 38%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolPickler.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitSubgraphs_static.a CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o | |
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| [ 38%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp | |
| [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/TorsionConstraint.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target FragCatalog_static | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp | |
| [ 38%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp | |
| [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/PositionConstraint.cpp | |
| [ 38%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/ReactionDepict.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/DependInfo.cmake --color= | |
| [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/Params.cpp | |
| Scanning dependencies of target Descriptors_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build | |
| [ 38%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Crippen.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Crippen.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Crippen.cpp | |
| [ 38%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SmilesWriter.cpp | |
| [ 38%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Canon.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Canon.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Canon.cpp | |
| [ 38%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp | |
| [ 38%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatGenerator.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Fingerprints_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build | |
| [ 38%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FilterMatchers.cpp | |
| [ 38%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/Fingerprints.cpp | |
| [ 38%] Linking CXX static library libRDKitForceField_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ForceField_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ForceField_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitForceField_static.a CMakeFiles/ForceField_static.dir/ForceField.cpp.o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o | |
| /usr/bin/ranlib libRDKitForceField_static.a | |
| [ 38%] Built target ForceField_static | |
| [ 39%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MolDescriptors.cpp | |
| [ 39%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TDTMolSupplier.cpp | |
| [ 39%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/ReactionUtils.cpp | |
| [ 39%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp | |
| [ 39%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/PatternFingerprints.cpp | |
| [ 40%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/AtomIterators.cpp | |
| [ 40%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp | |
| [ 40%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MolSurf.cpp | |
| [ 40%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TDTWriter.cpp | |
| [ 40%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/MoleculeParser.cpp | |
| [ 40%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/BondIterators.cpp | |
| [ 40%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatParams.cpp | |
| [ 41%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/MorganFingerprints.cpp | |
| [ 41%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Lipinski.cpp | |
| [ 42%] Linking CXX static library libRDKitFilterCatalog_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FilterCatalog_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFilterCatalog_static.a CMakeFiles/FilterCatalog_static.dir/Filters.cpp.o CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o | |
| /usr/bin/ranlib libRDKitFilterCatalog_static.a | |
| [ 42%] Built target FilterCatalog_static | |
| [ 42%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/ReactionRunner.cpp | |
| [ 42%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Aromaticity.cpp | |
| [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TplFileParser.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/DependInfo.cmake --color= | |
| [ 42%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp | |
| Scanning dependencies of target PartialCharges_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/build | |
| [ 42%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/GasteigerCharges.cpp | |
| [ 42%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragFPGenerator.cpp | |
| [ 42%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/AtomPairs.cpp | |
| [ 42%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Kekulize.cpp | |
| [ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TplFileWriter.cpp | |
| [ 42%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MQN.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MQN.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MQN.cpp | |
| [ 42%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/GasteigerParams.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/DependInfo.cmake --color= | |
| [ 42%] Linking CXX static library libRDKitFragCatalog_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FragCatalog_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFragCatalog_static.a CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o | |
| /usr/bin/ranlib libRDKitFragCatalog_static.a | |
| [ 42%] Built target FragCatalog_static | |
| [ 42%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDiscriminators.cpp | |
| Scanning dependencies of target MolTransforms_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/build | |
| [ 42%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/MolTransforms.cpp | |
| [ 43%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/PreprocessRxn.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/PreprocessRxn.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/PreprocessRxn.cpp | |
| [ 43%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/MACCS.cpp | |
| [ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/PDBParser.cpp | |
| [ 43%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Property.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Property.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Property.cpp | |
| [ 43%] Linking CXX static library libRDKitPartialCharges_static.a | |
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| /usr/bin/ar qc libRDKitPartialCharges_static.a CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o | |
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| [ 43%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ConjugHybrid.cpp | |
| [ 43%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/AUTOCORR2D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/AUTOCORR2D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/AUTOCORR2D.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/DependInfo.cmake --color= | |
| [ 43%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/SanitizeRxn.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/SanitizeRxn.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/SanitizeRxn.cpp | |
| Scanning dependencies of target ForceFieldHelpers_static | |
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| [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/UFF/AtomTyper.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/UFF/AtomTyper.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp | |
| [ 44%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AddHs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/AddHs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/AddHs.cpp | |
| [ 44%] Linking CXX static library libRDKitFingerprints_static.a | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFingerprints_static.a CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o | |
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| [ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/PDBWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/PDBWriter.cpp | |
| [ 45%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/Enumerate.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Enumerate/Enumerate.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp | |
| [ 45%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Data3Ddescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Data3Ddescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolTransforms_static.a CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o | |
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| [ 45%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/UFF/Builder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/UFF/Builder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp | |
| [ 46%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolData3Ddescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MolData3Ddescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp | |
| [ 46%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Matrices.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Matrices.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Matrices.cpp | |
| [ 46%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/EnumerationPickler.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Enumerate/EnumerationPickler.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target DistGeomHelpers_static | |
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| [ 46%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp | |
| [ 46%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/USRDescriptor.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/USRDescriptor.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/USRDescriptor.cpp | |
| [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/PDBSupplier.cpp | |
| [ 46%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/MMFF/AtomTyper.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/MMFF/AtomTyper.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp | |
| [ 46%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Embedder.cpp | |
| [ 46%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Chirality.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Chirality.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Chirality.cpp | |
| [ 46%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/PBF.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/PBF.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/PBF.cpp | |
| [ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/ProximityBonds.cpp | |
| [ 46%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/EvenSamplePairs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Enumerate/EvenSamplePairs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/DependInfo.cmake --color= | |
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| Scanning dependencies of target MolAlign_static | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/AUTOCORR3D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/AUTOCORR3D.cpp | |
| [ 48%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionAngleM6.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionAngleM6.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp | |
| [ 48%] Linking CXX static library libRDKitChemReactions_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ChemReactions_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemReactions && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitChemReactions_static.a CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions_static.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions_static.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions_static.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions_static.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions_static.dir/Enumerate/EvenSamplePairs.cpp.o | |
| /usr/bin/ranlib libRDKitChemReactions_static.a | |
| [ 48%] Built target ChemReactions_static | |
| [ 49%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/O3AAlignMolecules.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign_static.dir/O3AAlignMolecules.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp | |
| [ 49%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Renumber.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Renumber.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Renumber.cpp | |
| [ 49%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/RDF.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/RDF.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/RDF.cpp | |
| [ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SequenceWriters.cpp | |
| [ 49%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MORSE.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MORSE.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MORSE.cpp | |
| [ 49%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionPreferences.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionPreferences.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target MolChemicalFeatures_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build | |
| [ 49%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AdjustQuery.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/AdjustQuery.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/AdjustQuery.cpp | |
| [ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/DependInfo.cmake --color= | |
| [ 49%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/GETAWAY.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/GETAWAY.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/GETAWAY.cpp | |
| [ 49%] Linking CXX static library libRDKitFileParsers_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FileParsers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FileParsers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFileParsers_static.a CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o CMakeFiles/FileParsers_static.dir/PDBWriter.cpp.o CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers_static.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o | |
| /usr/bin/ranlib libRDKitFileParsers_static.a | |
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| [ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp | |
| Scanning dependencies of target ShapeHelpers_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build | |
| [ 49%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target MolCatalog_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build | |
| [ 49%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp | |
| [ 49%] Linking CXX static library libRDKitForceFieldHelpers_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ForceFieldHelpers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitForceFieldHelpers_static.a CMakeFiles/ForceFieldHelpers_static.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionPreferences.cpp.o | |
| /usr/bin/ranlib libRDKitForceFieldHelpers_static.a | |
| [ 49%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp | |
| [ 49%] Built target ForceFieldHelpers_static | |
| [ 49%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/MolCatalogParams.cpp | |
| [ 49%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Resonance.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Resonance.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Resonance.cpp | |
| [ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp | |
| [ 49%] Linking CXX static library libRDKitMolAlign_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolAlign_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolAlign_static.dir/link.txt --verbose=1 | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/depend | |
| /usr/bin/ar qc libRDKitMolAlign_static.a CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign_static.dir/O3AAlignMolecules.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/DependInfo.cmake --color= | |
| /usr/bin/ranlib libRDKitMolAlign_static.a | |
| [ 49%] Built target MolAlign_static | |
| [ 49%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/new_canon.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/new_canon.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/new_canon.cpp | |
| [ 49%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/WHIM.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/WHIM.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/WHIM.cpp | |
| Scanning dependencies of target MolDraw2D_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/build | |
| [ 49%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D/MolDraw2D.cpp | |
| [ 49%] Linking CXX static library libRDKitMolCatalog_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolCatalog_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolCatalog_static.a CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o | |
| /usr/bin/ranlib libRDKitMolCatalog_static.a | |
| [ 49%] Built target MolCatalog_static | |
| [ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp | |
| [ 49%] Linking CXX static library libRDKitShapeHelpers_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ShapeHelpers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitShapeHelpers_static.a CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o | |
| /usr/bin/ranlib libRDKitShapeHelpers_static.a | |
| [ 49%] Built target ShapeHelpers_static | |
| [ 49%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DSVG.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2DSVG.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target FMCS_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/build | |
| [ 49%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/FMCS.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/FMCS.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/FMCS.cpp | |
| [ 49%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DDetails.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2DDetails.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp | |
| [ 49%] Linking CXX static library libRDKitGraphMol_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/GraphMol_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/GraphMol_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitGraphMol_static.a CMakeFiles/GraphMol_static.dir/Atom.cpp.o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o CMakeFiles/GraphMol_static.dir/Bond.cpp.o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o CMakeFiles/GraphMol_static.dir/Canon.cpp.o CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol_static.dir/AddHs.cpp.o CMakeFiles/GraphMol_static.dir/Matrices.cpp.o CMakeFiles/GraphMol_static.dir/Chirality.cpp.o CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o CMakeFiles/GraphMol_static.dir/Conformer.cpp.o CMakeFiles/GraphMol_static.dir/Renumber.cpp.o CMakeFiles/GraphMol_static.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol_static.dir/Resonance.cpp.o CMakeFiles/GraphMol_static.dir/new_canon.cpp.o | |
| /usr/bin/ranlib libRDKitGraphMol_static.a | |
| [ 49%] Built target GraphMol_static | |
| [ 49%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/Seed.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/Seed.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Seed.cpp | |
| [ 50%] Linking CXX static library libRDKitMolChemicalFeatures_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolChemicalFeatures_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolChemicalFeatures_static.a CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o | |
| /usr/bin/ranlib libRDKitMolChemicalFeatures_static.a | |
| [ 50%] Built target MolChemicalFeatures_static | |
| [ 51%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2DUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp | |
| [ 51%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/MaximumCommonSubgraph.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/MaximumCommonSubgraph.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/DependInfo.cmake --color= | |
| [ 51%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/SubstructMatchCustom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/SubstructMatchCustom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/SubstructMatchCustom.cpp | |
| Scanning dependencies of target MolHash_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/build | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/DependInfo.cmake --color= | |
| [ 51%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/MolHash.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash_static.dir/MolHash.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash/MolHash.cpp | |
| Scanning dependencies of target MMPA_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/build | |
| [ 51%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/MMPA.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA_static.dir/MMPA.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/MMPA.cpp | |
| [ 51%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/HashToString.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash_static.dir/HashToString.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash/HashToString.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/DependInfo.cmake --color= | |
| [ 52%] Linking CXX static library libRDKitDescriptors_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Descriptors_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Descriptors_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDescriptors_static.a CMakeFiles/Descriptors_static.dir/Crippen.cpp.o CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MQN.cpp.o CMakeFiles/Descriptors_static.dir/Property.cpp.o CMakeFiles/Descriptors_static.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors_static.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors_static.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors_static.dir/PBF.cpp.o CMakeFiles/Descriptors_static.dir/PMI.cpp.o CMakeFiles/Descriptors_static.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors_static.dir/RDF.cpp.o CMakeFiles/Descriptors_static.dir/MORSE.cpp.o CMakeFiles/Descriptors_static.dir/GETAWAY.cpp.o CMakeFiles/Descriptors_static.dir/WHIM.cpp.o | |
| /usr/bin/ranlib libRDKitDescriptors_static.a | |
| [ 52%] Built target Descriptors_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ReducedGraphs_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/build | |
| [ 52%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/ReducedGraphs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ReducedGraphs_static.dir/ReducedGraphs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp | |
| Scanning dependencies of target StructChecker_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/build | |
| [ 52%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructChecker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StructChecker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/StructChecker.cpp | |
| [ 52%] Linking CXX static library libRDKitMolDraw2D_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolDraw2D_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDraw2D && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolDraw2D_static.a CMakeFiles/MolDraw2D_static.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D_static.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D_static.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D_static.dir/MolDraw2DUtils.cpp.o | |
| /usr/bin/ranlib libRDKitMolDraw2D_static.a | |
| [ 52%] Built target MolDraw2D_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/DependInfo.cmake --color= | |
| [ 52%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructCheckerOptions.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StructCheckerOptions.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/StructCheckerOptions.cpp | |
| Scanning dependencies of target Trajectory_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/build | |
| [ 52%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/Trajectory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Trajectory_static.dir/Trajectory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory/Trajectory.cpp | |
| [ 52%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructureFlags.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StructureFlags.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/StructureFlags.cpp | |
| [ 52%] Linking CXX static library libRDKitMolHash_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolHash_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolHash && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolHash_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolHash_static.a CMakeFiles/MolHash_static.dir/MolHash.cpp.o CMakeFiles/MolHash_static.dir/HashToString.cpp.o | |
| /usr/bin/ranlib libRDKitMolHash_static.a | |
| [ 52%] Built target MolHash_static | |
| [ 52%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Utilites.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/Utilites.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/Utilites.cpp | |
| [ 52%] Linking CXX static library libRDKitMMPA_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MMPA_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MMPA_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMMPA_static.a CMakeFiles/MMPA_static.dir/MMPA.cpp.o | |
| /usr/bin/ranlib libRDKitMMPA_static.a | |
| [ 52%] Built target MMPA_static | |
| [ 52%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Pattern.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/Pattern.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/Pattern.cpp | |
| [ 52%] Linking CXX static library libRDKitFMCS_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FMCS_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FMCS_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFMCS_static.a CMakeFiles/FMCS_static.dir/FMCS.cpp.o CMakeFiles/FMCS_static.dir/Seed.cpp.o CMakeFiles/FMCS_static.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS_static.dir/SubstructMatchCustom.cpp.o | |
| /usr/bin/ranlib libRDKitFMCS_static.a | |
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| [ 53%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Stereo.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/Stereo.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/Stereo.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/DependInfo.cmake --color= | |
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| [ 53%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/SubstructLibrary.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructLibrary_static.dir/SubstructLibrary.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs_static.dir/link.txt --verbose=1 | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/AtomSymbolMatch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/depend | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StripSmallFragments.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker/StripSmallFragments.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/DistPicker.cpp | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/DependInfo.cmake --color= | |
| [ 55%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/HierarchicalClusterPicker.cpp | |
| Scanning dependencies of target InfoTheory_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/build | |
| [ 55%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/InfoBitRanker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/InfoTheory_static.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/InfoBitRanker.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ChemicalFeatures | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build | |
| [ 55%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/FreeChemicalFeature.cpp | |
| Scanning dependencies of target ChemicalFeatures_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/build | |
| [ 55%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemicalFeatures_static.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/FreeChemicalFeature.cpp | |
| [ 55%] Linking CXX static library libRDKitSubstructLibrary_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/SubstructLibrary_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitSubstructLibrary_static.a CMakeFiles/SubstructLibrary_static.dir/SubstructLibrary.cpp.o | |
| /usr/bin/ranlib libRDKitSubstructLibrary_static.a | |
| [ 55%] Built target SubstructLibrary_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdkit.so | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/build | |
| [ 55%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/adapter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/adapter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/adapter.cpp | |
| [ 55%] Linking CXX static library libRDKitSimDivPickers_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/SimDivPickers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitSimDivPickers_static.a CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitSimDivPickers_static.a(MaxMinPicker.cpp.o) has no symbols | |
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| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitSimDivPickers_static.a(MaxMinPicker.cpp.o) has no symbols | |
| [ 55%] Built target SimDivPickers_static | |
| [ 55%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bfp_op.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bfp_op.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/bfp_op.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= | |
| [ 55%] Linking CXX static library libRDKitStructChecker_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/StructChecker_static.dir/cmake_clean_target.cmake | |
| Scanning dependencies of target RDBoost | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/StructChecker && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/StructChecker_static.dir/link.txt --verbose=1 | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build | |
| /usr/bin/ar qc libRDKitStructChecker_static.a CMakeFiles/StructChecker_static.dir/StructChecker.cpp.o CMakeFiles/StructChecker_static.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker_static.dir/StructureFlags.cpp.o CMakeFiles/StructChecker_static.dir/Utilites.cpp.o CMakeFiles/StructChecker_static.dir/Pattern.cpp.o CMakeFiles/StructChecker_static.dir/Stereo.cpp.o CMakeFiles/StructChecker_static.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker_static.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker_static.dir/ReCharge.cpp.o CMakeFiles/StructChecker_static.dir/Tautomer.cpp.o | |
| /usr/bin/ranlib libRDKitStructChecker_static.a | |
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| [ 55%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap.cpp | |
| [ 55%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/cache.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/cache.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/cache.c | |
| [ 55%] Linking CXX static library libRDKitInfoTheory_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/InfoTheory_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory_static.dir/link.txt --verbose=1 | |
| Scanning dependencies of target DataStructs | |
| /usr/bin/ar qc libRDKitInfoTheory_static.a CMakeFiles/InfoTheory_static.dir/InfoBitRanker.cpp.o | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build | |
| /usr/bin/ranlib libRDKitInfoTheory_static.a | |
| [ 55%] Built target InfoTheory_static | |
| [ 55%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/guc.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/guc.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/guc.c | |
| [ 55%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/BitVect.cpp | |
| [ 55%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/SparseBitVect.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target SimDivPickers | |
| [ 55%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.dylib | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitChemicalFeatures.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitChemicalFeatures.1.dylib CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o | |
| [ 55%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/DistPicker.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.2018.03.1.dev1.dylib ../../lib/libRDKitChemicalFeatures.1.dylib ../../lib/libRDKitChemicalFeatures.dylib | |
| [ 55%] Built target ChemicalFeatures | |
| [ 55%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/ExplicitBitVect.cpp | |
| [ 55%] Linking CXX static library libRDKitChemicalFeatures_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ChemicalFeatures_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitChemicalFeatures_static.a CMakeFiles/ChemicalFeatures_static.dir/FreeChemicalFeature.cpp.o | |
| /usr/bin/ranlib libRDKitChemicalFeatures_static.a | |
| [ 55%] Built target ChemicalFeatures_static | |
| [ 55%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/low_gist.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/low_gist.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/low_gist.c | |
| [ 55%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/MaxMinPicker.cpp | |
| [ 55%] Linking CXX static library libRDKitRGroupDecomposition_static.a | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RGroupDecomposition && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/RGroupDecomposition_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RGroupDecomposition && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitRGroupDecomposition_static.a CMakeFiles/RGroupDecomposition_static.dir/RGroupDecomp.cpp.o | |
| /usr/bin/ranlib libRDKitRGroupDecomposition_static.a | |
| [ 55%] Built target RGroupDecomposition_static | |
| [ 55%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Utils.cpp | |
| [ 56%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/HierarchicalClusterPicker.cpp | |
| [ 56%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/mol_op.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/mol_op.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/mol_op.c | |
| [ 56%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/rdkit_gist.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/rdkit_gist.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/rdkit_gist.c | |
| [ 56%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/base64.cpp | |
| [ 56%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/BitOps.cpp | |
| [ 57%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bfp_gist.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bfp_gist.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/bfp_gist.c | |
| [ 57%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bfp_gin.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bfp_gin.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/bfp_gin.c | |
| [ 57%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/DiscreteDistMat.cpp | |
| [ 57%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bitstring.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bitstring.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/bitstring.c | |
| [ 57%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/rdkit_io.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/rdkit_io.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/rdkit_io.c | |
| [ 57%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/rxn_op.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/rxn_op.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/rxn_op.c | |
| [ 58%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/DiscreteValueVect.cpp | |
| [ 58%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/sfp_op.c.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-9259-17ns1bi/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/sfp_op.c.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/sfp_op.c | |
| [ 58%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/FPBReader.cpp | |
| [ 58%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/MultiFPBReader.cpp | |
| [ 59%] Linking CXX shared library ../../lib/libRDKitRDBoost.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitRDBoost.1.dylib CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib ../../lib/libRDKitRDBoost.1.dylib ../../lib/libRDKitRDBoost.dylib | |
| [ 59%] Built target RDBoost | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Cluster/Murtagh /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Cluster/Murtagh /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= | |
| [ 59%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitSimDivPickers.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitSimDivPickers.1.dylib CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.2018.03.1.dev1.dylib ../../lib/libRDKitSimDivPickers.1.dylib ../../lib/libRDKitSimDivPickers.dylib | |
| Scanning dependencies of target Clustering | |
| Scanning dependencies of target rdBase | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build | |
| [ 59%] Built target SimDivPickers | |
| [ 59%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o | |
| [ 59%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DClustering_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Cluster/Murtagh/Clustering.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap/RDBase.cpp | |
| [ 59%] Linking CXX executable rdkit.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E copy_directory /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/sql /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/sql | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E copy_directory /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/data /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/data | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E copy_directory /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/expected /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit/expected | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/PgSQL/rdkit && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdkit.so.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -bundle -multiply_defined suppress;-Wl,-dead_strip_dylibs -bundle_loader /usr/local/Cellar/postgresql/10.3/bin/postgres CMakeFiles/rdkit.so.dir/adapter.cpp.o CMakeFiles/rdkit.so.dir/bfp_op.c.o CMakeFiles/rdkit.so.dir/cache.c.o CMakeFiles/rdkit.so.dir/guc.c.o CMakeFiles/rdkit.so.dir/low_gist.c.o CMakeFiles/rdkit.so.dir/mol_op.c.o CMakeFiles/rdkit.so.dir/rdkit_gist.c.o CMakeFiles/rdkit.so.dir/bfp_gist.c.o CMakeFiles/rdkit.so.dir/bfp_gin.c.o CMakeFiles/rdkit.so.dir/bitstring.c.o CMakeFiles/rdkit.so.dir/rdkit_io.c.o CMakeFiles/rdkit.so.dir/rxn_op.c.o CMakeFiles/rdkit.so.dir/sfp_op.c.o -o rdkit.so ../../../External/AvalonTools/libRDKitAvalonLib_static.a ../../../External/AvalonTools/libRDKitavalon_clib_static.a ../../../External/INCHI-API/libRDKitRDInchiLib_static.a ../../../External/INCHI-API/libRDKitInchi_static.a ../../GraphMol/MolDraw2D/libRDKitMolDraw2D_static.a ../../GraphMol/MolTransforms/libRDKitMolTransforms_static.a ../../GraphMol/MolHash/libRDKitMolHash_static.a ../../GraphMol/FMCS/libRDKitFMCS_static.a ../../GraphMol/ChemReactions/libRDKitChemReactions_static.a ../../GraphMol/ChemTransforms/libRDKitChemTransforms_static.a ../../GraphMol/FileParsers/libRDKitFileParsers_static.a ../../GraphMol/SmilesParse/libRDKitSmilesParse_static.a ../../GraphMol/Fingerprints/libRDKitFingerprints_static.a ../../GraphMol/Subgraphs/libRDKitSubgraphs_static.a ../../GraphMol/Descriptors/libRDKitDescriptors_static.a ../../GraphMol/PartialCharges/libRDKitPartialCharges_static.a ../../GraphMol/Substruct/libRDKitSubstructMatch_static.a ../../GraphMol/libRDKitGraphMol_static.a ../../Numerics/EigenSolvers/libRDKitEigenSolvers_static.a ../../DataStructs/libRDKitDataStructs_static.a ../../GraphMol/Depictor/libRDKitDepictor_static.a ../../Geometry/libRDKitRDGeometryLib_static.a ../../RDGeneral/libRDKitRDGeneral_static.a /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 59%] Built target rdkit.so | |
| [ 59%] Linking CXX shared library ../../lib/libRDKitDataStructs.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitDataStructs.1.dylib CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../lib/libRDKitDataStructs.1.dylib ../../lib/libRDKitDataStructs.dylib | |
| [ 59%] Built target DataStructs | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataManip/MetricMatrixCalc/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataManip/MetricMatrixCalc/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target InfoTheory | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build | |
| [ 59%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DInfoTheory_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/InfoBitRanker.cpp | |
| Scanning dependencies of target rdMetricMatrixCalc | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build | |
| [ 59%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp | |
| Scanning dependencies of target RDGeometryLib | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build | |
| Scanning dependencies of target rdSimDivPickers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build | |
| [ 59%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o | |
| [ 59%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/point.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Transform2D.cpp | |
| [ 59%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap/MaxMinPicker.cpp | |
| Scanning dependencies of target cDataStructs | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build | |
| [ 60%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libRDKithc.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 60%] Built target Clustering | |
| [ 60%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o | |
| [ 60%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Transform3D.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/DataStructs.cpp | |
| [ 60%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp | |
| [ 60%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitInfoTheory.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitInfoTheory.1.dylib CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 60%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/DiscreteValueVect.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.2018.03.1.dev1.dylib ../../../lib/libRDKitInfoTheory.1.dylib ../../../lib/libRDKitInfoTheory.dylib | |
| [ 60%] Built target InfoTheory | |
| [ 60%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp | |
| [ 60%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/UniformGrid3D.cpp | |
| [ 60%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 60%] Built target rdMetricMatrixCalc | |
| [ 60%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/SparseIntVect.cpp | |
| [ 60%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/GridUtils.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= | |
| [ 60%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/wrap_SparseBV.cpp | |
| Scanning dependencies of target rdInfoTheory | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build | |
| [ 60%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp | |
| [ 60%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp | |
| [ 60%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/SimDivPickers/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.2018.03.1.dev1.dylib ../../../lib/libRDKithc.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 60%] Built target rdSimDivPickers | |
| [ 60%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Data /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Data /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= | |
| [ 60%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitRDGeometryLib.1.dylib CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeometryLib.1.dylib ../../lib/libRDKitRDGeometryLib.dylib | |
| [ 60%] Built target RDGeometryLib | |
| [ 60%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp | |
| Scanning dependencies of target cQuantize | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build | |
| [ 60%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Data && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Data/cQuantize.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= | |
| [ 61%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/wrap_BitOps.cpp | |
| [ 62%] Linking CXX shared module ../../../rdkit/rdBase.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/RDBoost/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= | |
| [ 62%] Built target rdBase | |
| [ 62%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/wrap_FPB.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= | |
| [ 62%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/InfoTheory/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| Scanning dependencies of target rdGeometry | |
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| [ 62%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ML/Data && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 62%] Built target rdInfoTheory | |
| [ 62%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap/wrap_Utils.cpp | |
| [ 63%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap/Point.cpp | |
| [ 63%] Built target cQuantize | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap/UniformGrid3D.cpp | |
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| Scanning dependencies of target GraphMol | |
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| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Atom.cpp | |
| [ 64%] Linking CXX shared library ../../../lib/libRDKitAlignment.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitAlignment.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitAlignment.1.dylib CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.2018.03.1.dev1.dylib ../../../lib/libRDKitAlignment.1.dylib ../../../lib/libRDKitAlignment.dylib | |
| [ 64%] Built target Alignment | |
| [ 64%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap/rdGeometry.cpp | |
| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/QueryAtom.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Optimizer | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build | |
| [ 64%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer/BFGSOpt.cpp | |
| [ 64%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer/LinearSearch.cpp | |
| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/QueryBond.cpp | |
| [ 64%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DataStructs/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 64%] Built target cDataStructs | |
| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Bond.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= | |
| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolOps.cpp | |
| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FindRings.cpp | |
| Scanning dependencies of target rdAlignment | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build | |
| [ 64%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/Wrap/rdAlignment.cpp | |
| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ROMol.cpp | |
| [ 64%] Linking CXX shared library ../../../lib/libRDKitOptimizer.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitOptimizer.1.dylib CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 64%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Geometry/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../../lib/libRDKitOptimizer.1.dylib ../../../lib/libRDKitOptimizer.dylib | |
| [ 64%] Built target Optimizer | |
| [ 64%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o | |
| [ 64%] Built target rdGeometry | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RWMol.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ForceField | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build | |
| [ 64%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/ForceField.cpp | |
| [ 64%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/AngleBend.cpp | |
| [ 64%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/BondStretch.cpp | |
| [ 65%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PeriodicTable.cpp | |
| [ 65%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/atomic_data.cpp | |
| [ 65%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/Nonbonded.cpp | |
| [ 65%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/Numerics/Alignment/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 66%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/Inversion.cpp | |
| [ 66%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/QueryOps.cpp | |
| [ 66%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/TorsionAngle.cpp | |
| [ 66%] Built target rdAlignment | |
| [ 66%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolPickler.cpp | |
| [ 66%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/DistanceConstraint.cpp | |
| [ 66%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/AngleConstraint.cpp | |
| [ 66%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Canon.cpp | |
| [ 66%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/TorsionConstraint.cpp | |
| [ 66%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/AtomIterators.cpp | |
| [ 66%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/BondIterators.cpp | |
| [ 66%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Aromaticity.cpp | |
| [ 66%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/PositionConstraint.cpp | |
| [ 66%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Kekulize.cpp | |
| [ 67%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolDiscriminators.cpp | |
| [ 67%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/UFF/Params.cpp | |
| [ 67%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/AngleBend.cpp | |
| [ 67%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ConjugHybrid.cpp | |
| [ 67%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/BondStretch.cpp | |
| [ 68%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/StretchBend.cpp | |
| [ 68%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/OopBend.cpp | |
| [ 68%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/AddHs.cpp | |
| [ 68%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/TorsionAngle.cpp | |
| [ 68%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Matrices.cpp | |
| [ 68%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/Nonbonded.cpp | |
| [ 68%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Chirality.cpp | |
| [ 68%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RingInfo.cpp | |
| [ 68%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Conformer.cpp | |
| [ 68%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Renumber.cpp | |
| [ 68%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/DistanceConstraint.cpp | |
| [ 69%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/AdjustQuery.cpp | |
| [ 69%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Resonance.cpp | |
| [ 69%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/AngleConstraint.cpp | |
| [ 69%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/TorsionConstraint.cpp | |
| [ 69%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/PositionConstraint.cpp | |
| [ 69%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/new_canon.cpp | |
| [ 70%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/MMFF/Params.cpp | |
| [ 70%] Linking CXX shared library ../../lib/libRDKitForceField.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitForceField.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitForceField.1.dylib CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../lib/libRDKitForceField.1.dylib ../../lib/libRDKitForceField.dylib | |
| [ 70%] Built target ForceField | |
| [ 70%] Linking CXX shared library ../../lib/libRDKitGraphMol.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitGraphMol.1.dylib CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../lib/libRDKitGraphMol.1.dylib ../../lib/libRDKitGraphMol.dylib | |
| [ 70%] Built target GraphMol | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Trajectory | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build | |
| [ 70%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory/Trajectory.cpp | |
| Scanning dependencies of target PartialCharges | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build | |
| Scanning dependencies of target MolCatalog | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build | |
| [ 70%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/GasteigerCharges.cpp | |
| Scanning dependencies of target Subgraphs | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build | |
| Scanning dependencies of target MolTransforms | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build | |
| [ 70%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp | |
| [ 70%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs/Subgraphs.cpp | |
| Scanning dependencies of target rdqueries | |
| Scanning dependencies of target SubstructMatch | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build | |
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| [ 71%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/MolTransforms.cpp | |
| [ 71%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/rdqueries.cpp | |
| [ 71%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct/SubstructMatch.cpp | |
| Scanning dependencies of target SmilesParse | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build | |
| [ 71%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmilesParse.cpp | |
| [ 71%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/GasteigerParams.cpp | |
| [ 71%] Linking CXX shared library ../../../lib/libRDKitTrajectory.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitTrajectory.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitTrajectory.1.dylib CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 71%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/MolCatalogParams.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.2018.03.1.dev1.dylib ../../../lib/libRDKitTrajectory.1.dylib ../../../lib/libRDKitTrajectory.dylib | |
| [ 71%] Built target Trajectory | |
| [ 71%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs/SubgraphUtils.cpp | |
| [ 71%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmilesParseOps.cpp | |
| [ 71%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitMolCatalog.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitMolCatalog.1.dylib CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.2018.03.1.dev1.dylib ../../../lib/libRDKitMolCatalog.1.dylib ../../../lib/libRDKitMolCatalog.dylib | |
| [ 71%] Built target MolCatalog | |
| [ 71%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/Queries.cpp | |
| [ 72%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct/SubstructUtils.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdChemicalFeatures | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build | |
| [ 72%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp | |
| [ 72%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitMolTransforms.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitMolTransforms.1.dylib CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.2018.03.1.dev1.dylib ../../../lib/libRDKitMolTransforms.1.dylib ../../../lib/libRDKitMolTransforms.dylib | |
| [ 72%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitPartialCharges.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitPartialCharges.1.dylib CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 72%] Built target MolTransforms | |
| [ 73%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmilesWrite.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.2018.03.1.dev1.dylib ../../../lib/libRDKitPartialCharges.1.dylib ../../../lib/libRDKitPartialCharges.dylib | |
| [ 73%] Built target PartialCharges | |
| [ 73%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp | |
| [ 73%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/SmartsWrite.cpp | |
| [ 73%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitSubgraphs.1.dylib CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Subgraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../lib/libRDKitSubgraphs.1.dylib ../../../lib/libRDKitSubgraphs.dylib | |
| [ 73%] Built target Subgraphs | |
| [ 73%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/CXSmilesOps.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdMolTransforms | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp | |
| [ 73%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitSubstructMatch.1.dylib CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.1.dylib ../../../lib/libRDKitSubstructMatch.dylib | |
| [ 73%] Built target SubstructMatch | |
| [ 73%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/smarts.tab.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ShapeHelpers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp | |
| [ 73%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/smiles.tab.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdtrajectory | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/Trajectory.cpp | |
| [ 73%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp | |
| [ 73%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ChemicalFeatures/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 73%] Built target rdChemicalFeatures | |
| [ 73%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/lex.yysmarts.cpp | |
| [ 73%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 | |
| [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/rdTrajectory.cpp | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 73%] Built target rdqueries | |
| [ 73%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse/lex.yysmiles.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Depictor | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/RDDepictor.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdPartialCharges | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build | |
| [ 73%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp | |
| [ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolTransforms/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.2018.03.1.dev1.dylib ../../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 73%] Built target rdMolTransforms | |
| [ 73%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/EmbeddedFrag.cpp | |
| [ 73%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitShapeHelpers.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitShapeHelpers.1.dylib CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.2018.03.1.dev1.dylib ../../../lib/libRDKitShapeHelpers.1.dylib ../../../lib/libRDKitShapeHelpers.dylib | |
| [ 73%] Built target ShapeHelpers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= | |
| [ 74%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDepictor_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/DepictUtils.cpp | |
| Scanning dependencies of target MolAlign | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build | |
| [ 74%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitSmilesParse.1.dylib CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 74%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign/AlignMolecules.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.1.dylib ../../../lib/libRDKitSmilesParse.dylib | |
| [ 74%] Built target SmilesParse | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= | |
| [ 74%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp | |
| Scanning dependencies of target rdShapeHelpers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build | |
| [ 74%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= | |
| [ 75%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 75%] Built target rdtrajectory | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ReducedGraphs | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build | |
| [ 75%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp | |
| Scanning dependencies of target FileParsers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build | |
| [ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/Mol2FileParser.cpp | |
| [ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/PartialCharges/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 76%] Built target rdPartialCharges | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= | |
| [ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/MolFileParser.cpp | |
| Scanning dependencies of target ForceFieldHelpers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build | |
| [ 76%] Linking CXX shared library ../../../lib/libRDKitDepictor.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitDepictor.1.dylib CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/MolFileStereochem.cpp | |
| [ 76%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../../lib/libRDKitDepictor.1.dylib ../../../lib/libRDKitDepictor.dylib | |
| [ 76%] Built target Depictor | |
| [ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/MolFileWriter.cpp | |
| [ 76%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitReducedGraphs.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitReducedGraphs.1.dylib CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.2018.03.1.dev1.dylib ../../../lib/libRDKitReducedGraphs.1.dylib ../../../lib/libRDKitReducedGraphs.dylib | |
| [ 76%] Built target ReducedGraphs | |
| [ 76%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp | |
| [ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.2018.03.1.dev1.dylib ../../../../lib/libRDKitMolTransforms.2018.03.1.dev1.dylib ../../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 76%] Built target rdShapeHelpers | |
| [ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp | |
| [ 76%] Linking CXX shared library ../../../lib/libRDKitMolAlign.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitMolAlign.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitMolAlign.1.dylib CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitAlignment.2018.03.1.dev1.dylib ../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.2018.03.1.dev1.dylib ../../../lib/libRDKitMolAlign.1.dylib ../../../lib/libRDKitMolAlign.dylib | |
| [ 76%] Built target MolAlign | |
| [ 76%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend | |
| Scanning dependencies of target ChemTransforms | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= | |
| [ 76%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms/ChemTransforms.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target FilterCatalog | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build | |
| [ 76%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Filters.cpp | |
| Scanning dependencies of target Fingerprints | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build | |
| [ 76%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/Fingerprints.cpp | |
| [ 76%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms/MolFragmenter.cpp | |
| [ 76%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FilterCatalog.cpp | |
| [ 76%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/PatternFingerprints.cpp | |
| [ 76%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp | |
| [ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SDMolSupplier.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target FragCatalog | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build | |
| [ 76%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp | |
| [ 76%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp | |
| [ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SDWriter.cpp | |
| [ 76%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/MorganFingerprints.cpp | |
| [ 77%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitChemTransforms.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitChemTransforms.1.dylib CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.2018.03.1.dev1.dylib ../../../lib/libRDKitChemTransforms.1.dylib ../../../lib/libRDKitChemTransforms.dylib | |
| [ 77%] Built target ChemTransforms | |
| [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp | |
| [ 77%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatGenerator.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= | |
| [ 77%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/AtomPairs.cpp | |
| Scanning dependencies of target MolChemicalFeatures | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build | |
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| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp | |
| [ 77%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp | |
| [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp | |
| [ 78%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FilterMatchers.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= | |
| [ 78%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SmilesWriter.cpp | |
| [ 79%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp | |
| Scanning dependencies of target rdReducedGraphs | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build | |
| [ 79%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp | |
| [ 79%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp | |
| [ 79%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints/MACCS.cpp | |
| [ 79%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp | |
| [ 79%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp | |
| [ 79%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitForceFieldHelpers.1.dylib CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib ../../../lib/libRDKitForceFieldHelpers.1.dylib ../../../lib/libRDKitForceFieldHelpers.dylib | |
| [ 79%] Built target ForceFieldHelpers | |
| [ 80%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragCatParams.cpp | |
| [ 81%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TDTMolSupplier.cpp | |
| [ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= | |
| [ 81%] Linking CXX shared library ../../../lib/libRDKitFingerprints.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitFingerprints.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitFingerprints.1.dylib CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Fingerprints && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.2018.03.1.dev1.dylib ../../../lib/libRDKitFingerprints.1.dylib ../../../lib/libRDKitFingerprints.dylib | |
| [ 81%] Built target Fingerprints | |
| [ 81%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TDTWriter.cpp | |
| [ 81%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/FragFPGenerator.cpp | |
| Scanning dependencies of target rdchem | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build | |
| [ 81%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitFilterCatalog.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitFilterCatalog.1.dylib CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.2018.03.1.dev1.dylib ../../../lib/libRDKitFilterCatalog.1.dylib ../../../lib/libRDKitFilterCatalog.dylib | |
| [ 81%] Built target FilterCatalog | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color= | |
| [ 81%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TplFileParser.cpp | |
| [ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 | |
| [ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/rdchem.cpp | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 82%] Built target rdReducedGraphs | |
| [ 82%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/TplFileWriter.cpp | |
| Scanning dependencies of target RDInchiLib | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build | |
| [ 82%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/inchi.cpp | |
| [ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Table.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/Table.cpp | |
| [ 82%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitMolChemicalFeatures.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitMolChemicalFeatures.1.dylib CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.2018.03.1.dev1.dylib ../../../lib/libRDKitMolChemicalFeatures.1.dylib ../../../lib/libRDKitMolChemicalFeatures.dylib | |
| [ 82%] Built target MolChemicalFeatures | |
| [ 82%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/PDBParser.cpp | |
| [ 82%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitFragCatalog.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitFragCatalog.1.dylib CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.2018.03.1.dev1.dylib ../../../lib/libRDKitFragCatalog.1.dylib ../../../lib/libRDKitFragCatalog.dylib | |
| [ 82%] Built target FragCatalog | |
| [ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/Atom.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdForceField | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build | |
| [ 82%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/Wrap/ForceField.cpp | |
| Scanning dependencies of target DistGeometry | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build | |
| [ 82%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/DistGeomUtils.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdForceFieldHelpers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build | |
| [ 82%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp | |
| [ 82%] Linking CXX shared library ../../lib/libRDKitRDInchiLib.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitRDInchiLib.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitRDInchiLib.1.dylib CMakeFiles/RDInchiLib.dir/inchi.cpp.o ../../lib/libRDKitInchi.2018.03.1.dev1.dylib ../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDInchiLib.2018.03.1.dev1.dylib ../../lib/libRDKitRDInchiLib.1.dylib ../../lib/libRDKitRDInchiLib.dylib | |
| [ 82%] Built target RDInchiLib | |
| [ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/Bond.cpp | |
| [ 82%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/TriangleSmooth.cpp | |
| [ 82%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/PDBWriter.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= | |
| [ 82%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/DistViolationContrib.cpp | |
| Scanning dependencies of target rdMolChemicalFeatures | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build | |
| [ 82%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp | |
| [ 82%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/PDBSupplier.cpp | |
| [ 82%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/ChiralViolationContrib.cpp | |
| [ 82%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/Mol.cpp | |
| [ 82%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/ForceField/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 82%] Built target rdForceField | |
| [ 83%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp | |
| [ 83%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/ProximityBonds.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= | |
| [ 83%] Linking CXX shared library ../../lib/libRDKitDistGeometry.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitDistGeometry.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitDistGeometry.1.dylib CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib ../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.2018.03.1.dev1.dylib ../../lib/libRDKitDistGeometry.1.dylib ../../lib/libRDKitDistGeometry.dylib | |
| [ 83%] Built target DistGeometry | |
| [ 84%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/Conformer.cpp | |
| Scanning dependencies of target SubstructLibrary | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build | |
| [ 84%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp | |
| [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 84%] Built target rdForceFieldHelpers | |
| [ 84%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp | |
| [ 85%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SequenceParsers.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/Wrap /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color= | |
| [ 85%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp | |
| Scanning dependencies of target rdinchi | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build | |
| [ 85%] Building CXX object External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/pyInchi.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTARGET_API_LIB -Drdinchi_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/src/INCHI_BASE/src -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/Wrap/pyInchi.cpp | |
| [ 85%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers/SequenceWriters.cpp | |
| [ 85%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitSubstructLibrary.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitSubstructLibrary.1.dylib CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/RingInfo.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructLibrary.1.dylib ../../../lib/libRDKitSubstructLibrary.dylib | |
| [ 85%] Built target SubstructLibrary | |
| [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/EditableMol.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target DistGeom | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build | |
| [ 85%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/Wrap/DistGeom.cpp | |
| [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/MonomerInfo.cpp | |
| [ 85%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.2018.03.1.dev1.dylib ../../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 85%] Built target rdMolChemicalFeatures | |
| [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp | |
| [ 86%] Linking CXX shared module ../../../rdkit/Chem/rdinchi.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/INCHI-API/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdinchi.dir/link.txt --verbose=1 | |
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| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o ../../../lib/libRDKitRDInchiLib.2018.03.1.dev1.dylib ../../../lib/libRDKitInchi.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitFileParsers.1.dylib CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 86%] Built target rdinchi | |
| [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/MolBundle.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../lib/libRDKitFileParsers.1.dylib ../../../lib/libRDKitFileParsers.dylib | |
| [ 86%] Built target FileParsers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target DistGeomHelpers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build | |
| [ 86%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdMolCatalog | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build | |
| [ 86%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp | |
| [ 86%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Embedder.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= | |
| [ 86%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/DistGeom/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.2018.03.1.dev1.dylib ../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 86%] Built target DistGeom | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target FMCS | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build | |
| Scanning dependencies of target MMPA | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build | |
| [ 87%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/MMPA.cpp | |
| [ 87%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/FMCS.cpp | |
| [ 87%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Seed.cpp | |
| [ 88%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= | |
| [ 88%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o ../../../lib/libRDKitChemTransforms.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| Scanning dependencies of target rdSubstructLibrary | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build | |
| [ 88%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp | |
| [ 88%] Built target rdchem | |
| [ 88%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/SubstructMatchCustom.cpp | |
| [ 88%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitDistGeomHelpers.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitDistGeomHelpers.1.dylib CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitDistGeometry.2018.03.1.dev1.dylib ../../../lib/libRDKitAlignment.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 88%] Linking CXX shared library ../../../lib/libRDKitMMPA.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitMMPA.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitMMPA.1.dylib CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../lib/libRDKitChemTransforms.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.2018.03.1.dev1.dylib ../../../lib/libRDKitDistGeomHelpers.1.dylib ../../../lib/libRDKitDistGeomHelpers.dylib | |
| [ 88%] Built target DistGeomHelpers | |
| [ 88%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.2018.03.1.dev1.dylib ../../../lib/libRDKitMMPA.1.dylib ../../../lib/libRDKitMMPA.dylib | |
| [ 88%] Built target MMPA | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdmolfiles | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build | |
| [ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MolCatalog/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/rdmolfiles.cpp | |
| [ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp | |
| [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/SDMolSupplier.cpp | |
| [ 89%] Built target rdMolCatalog | |
| [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/TDTMolSupplier.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/AvalonLib.dir/build.make External/AvalonTools/CMakeFiles/AvalonLib.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/CMakeFiles/AvalonLib.dir/DependInfo.cmake --color= | |
| [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/SmilesMolSupplier.cpp | |
| Scanning dependencies of target AvalonLib | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/AvalonLib.dir/build.make External/AvalonTools/CMakeFiles/AvalonLib.dir/build | |
| [ 89%] Building CXX object External/AvalonTools/CMakeFiles/AvalonLib.dir/AvalonTools.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DAvalonLib_EXPORTS -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/AvalonLib.dir/AvalonTools.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/AvalonTools.cpp | |
| [ 89%] Linking CXX shared library ../../../lib/libRDKitFMCS.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../../lib/libRDKitFMCS.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitFMCS.1.dylib CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../lib/libRDKitChemTransforms.2018.03.1.dev1.dylib ../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.2018.03.1.dev1.dylib ../../../lib/libRDKitFMCS.1.dylib ../../../lib/libRDKitFMCS.dylib | |
| [ 89%] Built target FMCS | |
| [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/SmilesWriter.cpp | |
| [ 89%] Linking CXX shared library ../../lib/libRDKitAvalonLib.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/AvalonLib.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2018.3.1 -o ../../lib/libRDKitAvalonLib.2018.03.1.dev1.dylib -install_name /tmp/rdkit-20180331-9259-17ns1bi/lib/libRDKitAvalonLib.1.dylib CMakeFiles/AvalonLib.dir/AvalonTools.cpp.o ../../lib/libRDKitavalon_clib.2018.03.1.dev1.dylib ../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitAvalonLib.2018.03.1.dev1.dylib ../../lib/libRDKitAvalonLib.1.dylib ../../lib/libRDKitAvalonLib.dylib | |
| [ 89%] Built target AvalonLib | |
| [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/SDWriter.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdDepictor | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build | |
| [ 89%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp | |
| Scanning dependencies of target rdfiltercatalog | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build | |
| [ 89%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Descriptors | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build | |
| [ 89%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.2018.03.1.dev1.dylib ../../../../lib/libRDKitFingerprints.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 89%] Built target rdSubstructLibrary | |
| [ 89%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/TDTWriter.cpp | |
| [ 89%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Crippen.cpp | |
| Scanning dependencies of target rdfragcatalog | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build | |
| [ 89%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdDistGeom | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build | |
| [ 89%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp | |
| [ 90%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= | |
| [ 90%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp | |
| Scanning dependencies of target rdFMCS | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build | |
| [ 90%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp | |
| [ 90%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MolDescriptors.cpp | |
| [ 90%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap/PDBWriter.cpp | |
| [ 91%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Depictor/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 91%] Built target rdDepictor | |
| [ 91%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp | |
| [ 91%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MolSurf.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/Wrap /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target rdMMPA | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build | |
| [ 92%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Lipinski.cpp | |
| [ 93%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o ../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 93%] Built target rdmolfiles | |
| [ 93%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp | |
| [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.2018.03.1.dev1.dylib ../../../../lib/libRDKitDistGeometry.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitForceFieldHelpers.2018.03.1.dev1.dylib ../../../../lib/libRDKitForceField.2018.03.1.dev1.dylib ../../../../lib/libRDKitMolAlign.2018.03.1.dev1.dylib ../../../../lib/libRDKitOptimizer.2018.03.1.dev1.dylib ../../../../lib/libRDKitAlignment.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitMolTransforms.2018.03.1.dev1.dylib ../../../../lib/libRDKitEigenSolvers.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 93%] Built target rdDistGeom | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RGroupDecomposition /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RGroupDecomposition /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= | |
| [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FMCS/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitChemTransforms.2018.03.1.dev1.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| Scanning dependencies of target RGroupDecomposition | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MQN.cpp | |
| [ 93%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RGroupDecomposition && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp | |
| [ 93%] Built target rdFMCS | |
| [ 93%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp | |
| [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/MMPA/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitDepictor.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitChemTransforms.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 93%] Built target rdMMPA | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Property.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/Wrap/CMakeFiles/pyAvalonTools.dir/build.make External/AvalonTools/Wrap/CMakeFiles/pyAvalonTools.dir/depend | |
| cd /tmp/rdkit-20180331-9259-17ns1bi && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/Wrap /tmp/rdkit-20180331-9259-17ns1bi /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/Wrap /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/Wrap/CMakeFiles/pyAvalonTools.dir/DependInfo.cmake --color= | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/AUTOCORR2D.cpp | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp | |
| Scanning dependencies of target pyAvalonTools | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/Wrap/CMakeFiles/pyAvalonTools.dir/build.make External/AvalonTools/Wrap/CMakeFiles/pyAvalonTools.dir/build | |
| [ 93%] Building CXX object External/AvalonTools/Wrap/CMakeFiles/pyAvalonTools.dir/pyAvalonTools.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DpyAvalonTools_EXPORTS -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools -I/tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/SourceDistribution/common -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/pyAvalonTools.dir/pyAvalonTools.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/External/AvalonTools/Wrap/pyAvalonTools.cpp | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp | |
| [ 93%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors/USRDescriptor.cpp | |
| [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FragCatalog/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/FilterCatalog/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubgraphs.2018.03.1.dev1.dylib ../../../../lib/libRDKitSubstructMatch.2018.03.1.dev1.dylib ../../../../lib/libRDKitCatalogs.2018.03.1.dev1.dylib ../../../../lib/libRDKitFileParsers.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDBoost.2018.03.1.dev1.dylib /usr/local/lib/libboost_serialization-mt.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../../lib/libRDKitSmilesParse.2018.03.1.dev1.dylib ../../../../lib/libRDKitGraphMol.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeometryLib.2018.03.1.dev1.dylib ../../../../lib/libRDKitDataStructs.2018.03.1.dev1.dylib ../../../../lib/libRDKitRDGeneral.2018.03.1.dev1.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 93%] Built target rdfragcatalog | |
| [ 94%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o | |
| cd /tmp/rdkit-20180331-9259-17ns1bi/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-9259-17ns1bi/Code -I/usr/local/include/eigen |
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