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rdkit (mcs07/cheminformatics/rdkit) on macOS 10.13.4 - Homebrew build logs
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| Homebrew build logs for mcs07/cheminformatics/rdkit on macOS 10.13.4 | |
| Build date: 2018-03-31 19:23:05 |
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| HOMEBREW_VERSION: 1.5.13 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 0f4e22e28d3b65a6c8dbb0f270bb6d262a2429d6 | |
| Last commit: 3 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 41dd22806a81a5b27ba0d4d09dc90e4275803a19 | |
| Core tap last commit: 5 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| CPU: octa-core 64-bit skylake | |
| Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby | |
| Clang: 9.1 build 902 | |
| Git: 2.15.1 => /Applications/Xcode.app/Contents/Developer/usr/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Perl: /usr/bin/perl | |
| Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/bin/python3.6 | |
| Ruby: /Users/david/.rvm/rubies/ruby-2.3.0/bin/ruby | |
| Java: 1.8.0_91 | |
| macOS: 10.13.4-x86_64 | |
| Xcode: 9.3 | |
| CLT: 9.3.0.0.1.1521514116 | |
| X11: 2.7.9 => /opt/X11 |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: /usr/local/share/python is not needed in PATH. | |
| Formerly homebrew put Python scripts you installed via `pip` or `pip3` | |
| (or `easy_install`) into that directory above but now it can be removed | |
| from your PATH variable. | |
| Python scripts will now install into /usr/local/bin. | |
| You can delete anything, except 'Extras', from the /usr/local/share/python | |
| (and /usr/local/share/python@2) dir and install affected Python packages | |
| anew with `pip install --upgrade`. | |
| Warning: Unbrewed dylibs were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected dylibs: | |
| /usr/local/lib/libXyDelta.0.dylib | |
| Warning: Unbrewed .la files were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected .la files: | |
| /usr/local/lib/libXyDelta.la | |
| Warning: Unbrewed static libraries were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected static libraries: | |
| /usr/local/lib/libXyDelta.a | |
| Warning: Some directories in your path end in a slash. | |
| Directories in your path should not end in a slash. This can break other | |
| doctor checks. The following directories should be edited: | |
| /Users/david/Library/Android/sdk/platform-tools/ | |
| Warning: Your XQuartz (2.7.9) is outdated. | |
| Please install XQuartz 2.7.11 (or delete the current version). | |
| XQuartz can be updated using Homebrew-Cask by running | |
| brew cask reinstall xquartz | |
| Warning: Broken symlinks were found. Remove them with `brew prune`: | |
| /usr/local/bin/apm | |
| /usr/local/bin/atom | |
| /usr/local/etc/bash_completion.d/_brew_services | |
| Warning: Use r instead of deprecated homebrew/science/r | |
| Warning: Some installed formulae are missing dependencies. | |
| You should `brew install` the missing dependencies: | |
| brew install brotli libidn2 libmikmod libunistring | |
| Run `brew missing` for more details. |
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| mcs07/cheminformatics/rdkit --with-avalon --with-postgresql --with-python |
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| Formula: rdkit | |
| Tap: mcs07/cheminformatics | |
| Path: /usr/local/Homebrew/Library/Taps/mcs07/homebrew-cheminformatics/Formula/rdkit.rb |
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| 2018-03-31 19:19:30 +0300 | |
| cmake | |
| -DCMAKE_C_FLAGS_RELEASE=-DNDEBUG | |
| -DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG | |
| -DCMAKE_INSTALL_PREFIX=/usr/local/Cellar/rdkit/2017.09.3 | |
| -DCMAKE_BUILD_TYPE=Release | |
| -DCMAKE_FIND_FRAMEWORK=LAST | |
| -DCMAKE_VERBOSE_MAKEFILE=ON | |
| -Wno-dev | |
| -DRDK_INSTALL_INTREE=OFF | |
| -DRDK_BUILD_AVALON_SUPPORT=ON | |
| -DRDK_BUILD_PGSQL=ON | |
| -DRDK_BUILD_INCHI_SUPPORT=ON | |
| -DINCHI_INCLUDE_DIR='/usr/local/include/inchi/' | |
| -DINCHI_LIBRARIES='inchi' | |
| -DPYTHON_EXECUTABLE='/usr/local/opt/python/bin/python3' | |
| -DPYTHON_INCLUDE_DIR='/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m' | |
| -DPYTHON_LIBRARY='/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python' | |
| -DPYTHON_NUMPY_INCLUDE_PATH='/usr/local/lib/python3.6/site-packages/numpy/core/include' | |
| . | |
| -- The C compiler identification is AppleClang 9.1.0.9020039 | |
| -- The CXX compiler identification is AppleClang 9.1.0.9020039 | |
| -- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang | |
| -- Check for working C compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang -- works | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ | |
| -- Check for working CXX compiler: /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -- works | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Check if the system is big endian | |
| -- Searching 16 bit integer | |
| -- Looking for sys/types.h | |
| -- Looking for sys/types.h - found | |
| -- Looking for stdint.h | |
| -- Looking for stdint.h - found | |
| -- Looking for stddef.h | |
| -- Looking for stddef.h - found | |
| -- Check size of unsigned short | |
| -- Check size of unsigned short - done | |
| -- Using unsigned short | |
| -- Check if the system is big endian - little endian | |
| -- Found INCHI: /usr/local/lib/libinchi.dylib | |
| -- Found PythonInterp: /usr/local/opt/python/bin/python3 (found version "3.6.5") | |
| -- Found PythonLibs: /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python (found version "3.6.5") | |
| Python Install directory /usr/local/Cellar/rdkit/2017.09.3/lib/python3.6/site-packages | |
| -- Boost version: 1.66.0 | |
| -- Found the following Boost libraries: | |
| -- regex | |
| == OSX: CHECKING for libc++ | |
| == BOOST USES LIBC++ | |
| -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") | |
| -- Looking for pthread.h | |
| -- Looking for pthread.h - found | |
| -- Looking for pthread_create | |
| -- Looking for pthread_create - found | |
| -- Found Threads: TRUE | |
| -- Boost version: 1.66.0 | |
| -- Found the following Boost libraries: | |
| -- thread | |
| -- system | |
| -- chrono | |
| -- date_time | |
| -- atomic | |
| -- Boost version: 1.66.0 | |
| -- Found the following Boost libraries: | |
| -- serialization | |
| -- Found PostgreSQL: /usr/local/lib/libpq.dylib (found version "10.3") | |
| == Using strict rotor definition | |
| Downloading http://sourceforge.net/projects/avalontoolkit/files/AvalonToolkit_1.2/AvalonToolkit_1.2.0.source.tar... | |
| == Updating Filters.cpp from pains file | |
| == Done updating pains files | |
| ===================================================================== | |
| After building, check | |
| /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/pgsql_install.sh | |
| for correctness of installation paths. If everything is OK, gain | |
| administrator privileges, stop the PostgreSQL service, run | |
| /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/pgsql_install.sh | |
| to install the PostgreSQL RDKit cartridge, then start again | |
| the PostgreSQL service | |
| ===================================================================== | |
| -- Configuring done | |
| -- Generating done | |
| -- Build files have been written to: /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 |
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| clang called with: CMakeCCompilerId.c | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang CMakeCCompilerId.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: CMakeCXXCompilerId.cpp | |
| superenv added: -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang++ CMakeCXXCompilerId.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o CMakeFiles/cmTC_f358d.dir/testCCompiler.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/CMakeTmp/testCCompiler.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -o CMakeFiles/cmTC_f358d.dir/testCCompiler.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/CMakeTmp/testCCompiler.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f358d.dir/testCCompiler.c.o -o cmTC_f358d | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_f358d.dir/testCCompiler.c.o -o cmTC_f358d -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o CMakeFiles/cmTC_1ca16.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.11.0/share/cmake/Modules/CMakeCCompilerABI.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -o CMakeFiles/cmTC_1ca16.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.11.0/share/cmake/Modules/CMakeCCompilerABI.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_1ca16.dir/CMakeCCompilerABI.c.o -o cmTC_1ca16 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTC_1ca16.dir/CMakeCCompilerABI.c.o -o cmTC_1ca16 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -std=c11 -o CMakeFiles/cmTC_90b9d.dir/feature_tests.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -std=c11 -o CMakeFiles/cmTC_90b9d.dir/feature_tests.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_90b9d.dir/feature_tests.c.o -o cmTC_90b9d | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_90b9d.dir/feature_tests.c.o -o cmTC_90b9d -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -std=c99 -o CMakeFiles/cmTC_488fb.dir/feature_tests.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -std=c99 -o CMakeFiles/cmTC_488fb.dir/feature_tests.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_488fb.dir/feature_tests.c.o -o cmTC_488fb | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_488fb.dir/feature_tests.c.o -o cmTC_488fb -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -std=c90 -o CMakeFiles/cmTC_af149.dir/feature_tests.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/feature_tests.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -std=c90 -o CMakeFiles/cmTC_af149.dir/feature_tests.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/feature_tests.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_af149.dir/feature_tests.c.o -o cmTC_af149 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
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| clang called with: -o CMakeFiles/cmTC_4ed1a.dir/CheckSymbolExists.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/CMakeTmp/CheckSymbolExists.c | |
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| superenv executed: clang -pipe -w -Os -march=native -o CMakeFiles/cmTC_4ed1a.dir/CheckSymbolExists.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/CMakeTmp/CheckSymbolExists.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_4ed1a.dir/CheckSymbolExists.c.o -o cmTC_4ed1a | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_4ed1a.dir/CheckSymbolExists.c.o -o cmTC_4ed1a -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| 2018-03-31 19:19:48 +0300 | |
| make | |
| /usr/local/Cellar/cmake/3.11.0/bin/cmake -H/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 -B/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 --check-build-system CMakeFiles/Makefile.cmake 0 | |
| /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_progress_start /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/CMakeFiles/progress.marks | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/AvalonLib_static.dir/build.make External/AvalonTools/CMakeFiles/AvalonLib_static.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/avalon_clib.dir/build.make External/AvalonTools/CMakeFiles/avalon_clib.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f External/AvalonTools/CMakeFiles/avalon_clib_static.dir/build.make External/AvalonTools/CMakeFiles/avalon_clib_static.dir/depend | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/depend | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API/CMakeFiles/RDInchiLib_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/CMakeFiles/AvalonLib_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/CMakeFiles/avalon_clib.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/CMakeFiles/RDBoost_static.dir/DependInfo.cmake --color= | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/CMakeFiles/avalon_clib_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target inchi_support | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E copy /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API/python/inchi.py /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/rdkit/Chem/inchi.py | |
| Scanning dependencies of target avalon_clib_static | |
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| Scanning dependencies of target avalon_clib | |
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| [ 0%] Built target inchi_support | |
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| [ 0%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/layout.c | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/layout.c | |
| [ 0%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symboltable.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs_static.dir/build.make Code/DataStructs/CMakeFiles/DataStructs_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/CMakeFiles/DataStructs_static.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost_static.dir/Wrap.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Invariant.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Invariant.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/AvalonLib_static.dir/AvalonTools.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/AvalonTools.cpp | |
| Scanning dependencies of target RDInchiLib_static | |
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| Scanning dependencies of target DataStructs_static | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/stereo.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symbol_lists.c | |
| [ 2%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/stereo.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/SparseBitVect.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/set.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/set.c | |
| [ 3%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/perceive.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/perceive.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/perceive.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/local.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/local.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/graph.c | |
| [ 4%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/graph.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/geometry.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/geometry.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/AvalonLib_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/AvalonLib_static.dir/link.txt --verbose=1 | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/geometry.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/utils.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/forio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/forio.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/utils.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/ExplicitBitVect.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/depictutil.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/depictutil.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/denormal.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/rtutils.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Dict.cpp | |
| [ 6%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/smi2mol.c | |
| Scanning dependencies of target RDGeometryLib_static | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/Utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/Utils.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/point.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/point.cpp | |
| [ 6%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/smi2mol.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Dict.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/LocaleSwitcher.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/didepict.c | |
| [ 6%] Building C object External/AvalonTools/CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/didepict.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/RDInchiLib_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib_static.dir/link.txt --verbose=1 | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/Transform2D.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/pattern.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/pattern.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/canonizer.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/canonizer.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/versions.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/BitOps.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/aacheck.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/aacheck.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/fixcharges.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/fixcharges.c | |
| [ 6%] Building C object External/AvalonTools/CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/struchk.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.2017.09.3.dylib ../../lib/libRDKitRDGeneral.1.dylib ../../lib/libRDKitRDGeneral.dylib | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/avalon_clib_static.dir/link.txt --verbose=1 | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/hashcode.c | |
| /usr/bin/ar qc libRDKitavalon_clib_static.a CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/layout.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/patclean.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/utilities.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symbol_lists.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/stereo.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/set.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/perceive.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/local.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/graph.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/geometry.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/forio.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/depictutil.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/denormal.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/casutils.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/ssmatch.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/rtutils.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/didepict.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/pattern.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/canonizer.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/aacheck.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/fixcharges.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/reaccsio.c.o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/hashcode.c.o | |
| /usr/bin/ranlib libRDKitavalon_clib_static.a | |
| [ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/UniformGrid3D.cpp | |
| [ 10%] Built target avalon_clib_static | |
| [ 10%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/versions.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/versions.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/versions.cpp | |
| [ 10%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/DiscreteValueVect.cpp | |
| [ 10%] Linking C shared library ../../lib/libRDKitavalon_clib.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/avalon_clib.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang -Wno-array-bounds -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitavalon_clib.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitavalon_clib.1.dylib CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/utilities.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/ssmatch.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/DependInfo.cmake --color= | |
| [ 10%] Linking CXX static library libRDKitRDGeneral_static.a | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitRDGeneral_static.a CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o CMakeFiles/RDGeneral_static.dir/types.cpp.o CMakeFiles/RDGeneral_static.dir/utils.cpp.o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o CMakeFiles/RDGeneral_static.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral_static.dir/versions.cpp.o | |
| /usr/bin/ranlib libRDKitRDGeneral_static.a | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitavalon_clib.2017.09.3.dylib ../../lib/libRDKitavalon_clib.1.dylib ../../lib/libRDKitavalon_clib.dylib | |
| [ 10%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/GridUtils.cpp | |
| [ 10%] Built target avalon_clib | |
| [ 10%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/FPBReader.cpp | |
| Scanning dependencies of target EigenSolvers_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/build | |
| [ 10%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp | |
| [ 11%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/MultiFPBReader.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Optimizer_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/build | |
| [ 11%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer/BFGSOpt.cpp | |
| [ 11%] Linking CXX static library libRDKitAlignment_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Alignment_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Alignment && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Alignment_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitAlignment_static.a CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o | |
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| [ 11%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer/LinearSearch.cpp | |
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| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DependInfo.cmake --color= | |
| [ 11%] Linking CXX static library libRDKitRDGeometryLib_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/RDGeometryLib_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitRDGeometryLib_static.a CMakeFiles/RDGeometryLib_static.dir/point.cpp.o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o | |
| [ 11%] Linking CXX static library libRDKitEigenSolvers_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/EigenSolvers_static.dir/cmake_clean_target.cmake | |
| /usr/bin/ranlib libRDKitRDGeometryLib_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitEigenSolvers_static.a CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o | |
| [ 11%] Built target RDGeometryLib_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= | |
| /usr/bin/ranlib libRDKitEigenSolvers_static.a | |
| [ 11%] Built target EigenSolvers_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs_static.dir/build.make Code/Catalogs/CMakeFiles/Catalogs_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CMakeFiles/Catalogs_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target DistGeometry_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry_static.dir/build | |
| [ 11%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/DistGeomUtils.cpp | |
| Scanning dependencies of target Catalogs | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build | |
| Scanning dependencies of target Catalogs_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs_static.dir/build.make Code/Catalogs/CMakeFiles/Catalogs_static.dir/build | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/CMakeFiles/GraphMol_static.dir/DependInfo.cmake --color= | |
| [ 12%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/Catalog.cpp | |
| [ 12%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/Catalog.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/Catalog.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ForceField_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ForceField/CMakeFiles/ForceField_static.dir/build.make Code/ForceField/CMakeFiles/ForceField_static.dir/build | |
| [ 12%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/ForceField.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/ForceField.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/ForceField.cpp | |
| [ 13%] Linking CXX static library libRDKitOptimizer_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Optimizer_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Optimizer_static.dir/link.txt --verbose=1 | |
| Scanning dependencies of target Depictor_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/build | |
| /usr/bin/ar qc libRDKitOptimizer_static.a CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o | |
| /usr/bin/ranlib libRDKitOptimizer_static.a | |
| [ 13%] Built target Optimizer_static | |
| [ 13%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/TriangleSmooth.cpp | |
| [ 13%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/RDDepictor.cpp | |
| [ 13%] Linking CXX static library libRDKitDataStructs_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/DataStructs_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DataStructs_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDataStructs_static.a CMakeFiles/DataStructs_static.dir/BitVect.cpp.o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs_static.dir/Utils.cpp.o CMakeFiles/DataStructs_static.dir/base64.cpp.o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o | |
| /usr/bin/ranlib libRDKitDataStructs_static.a | |
| [ 13%] Built target DataStructs_static | |
| [ 13%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogParams.cpp | |
| [ 13%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/AngleBend.cpp | |
| Scanning dependencies of target GraphMol_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol_static.dir/build.make Code/GraphMol/CMakeFiles/GraphMol_static.dir/build | |
| [ 13%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Atom.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Atom.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Atom.cpp | |
| [ 13%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogParams.cpp | |
| [ 13%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogEntry.cpp | |
| [ 13%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogEntry.cpp | |
| [ 13%] Linking CXX static library libRDKitCatalogs_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Catalogs_static.dir/cmake_clean_target.cmake | |
| [ 13%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Catalogs_static.dir/link.txt --verbose=1 | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/EmbeddedFrag.cpp | |
| [ 14%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/DistViolationContrib.cpp | |
| /usr/bin/ar qc libRDKitCatalogs_static.a CMakeFiles/Catalogs_static.dir/Catalog.cpp.o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitCatalogs_static.a(Catalog.cpp.o) has no symbols | |
| /usr/bin/ranlib libRDKitCatalogs_static.a | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitCatalogs_static.a(Catalog.cpp.o) has no symbols | |
| [ 14%] Built target Catalogs_static | |
| [ 14%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/BondStretch.cpp | |
| [ 14%] Linking CXX shared library ../../lib/libRDKitCatalogs.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitCatalogs.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryAtom.cpp | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.2017.09.3.dylib ../../lib/libRDKitCatalogs.1.dylib ../../lib/libRDKitCatalogs.dylib | |
| [ 14%] Built target Catalogs | |
| [ 14%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/DepictUtils.cpp | |
| [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryBond.cpp | |
| [ 14%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/ChiralViolationContrib.cpp | |
| [ 14%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Bond.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Bond.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Bond.cpp | |
| [ 14%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Nonbonded.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/DependInfo.cmake --color= | |
| [ 14%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Inversion.cpp | |
| [ 14%] Linking CXX static library libRDKitDistGeometry_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/DistGeometry_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDistGeometry_static.a CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o | |
| /usr/bin/ranlib libRDKitDistGeometry_static.a | |
| [ 14%] Built target DistGeometry_static | |
| [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolOps.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolOps.cpp | |
| Scanning dependencies of target SmilesParse_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/build | |
| [ 16%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/TorsionAngle.cpp | |
| [ 16%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/FindRings.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FindRings.cpp | |
| [ 16%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesParse.cpp | |
| [ 16%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/DistanceConstraint.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Depictor_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Depictor_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDepictor_static.a CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o | |
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| [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ROMol.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ROMol.cpp | |
| [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp | |
| [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RWMol.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RWMol.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/DependInfo.cmake --color= | |
| [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/AngleConstraint.cpp | |
| Scanning dependencies of target FileParsers_static | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/Mol2FileParser.cpp | |
| [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PeriodicTable.cpp | |
| [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesWrite.cpp | |
| [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/TorsionConstraint.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/DependInfo.cmake --color= | |
| [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/PositionConstraint.cpp | |
| Scanning dependencies of target SubstructMatch_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/build | |
| [ 17%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileParser.cpp | |
| [ 17%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct/SubstructMatch.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/DependInfo.cmake --color= | |
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| [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/atomic_data.cpp | |
| [ 17%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct/SubstructUtils.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Params.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryOps.cpp | |
| [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmartsWrite.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/MDLParser.cpp | |
| [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/AngleBend.cpp | |
| [ 17%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileStereochem.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch_static.dir/link.txt --verbose=1 | |
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| /usr/bin/ranlib libRDKitSubstructMatch_static.a | |
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| [ 17%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileWriter.cpp | |
| Scanning dependencies of target ChemTransforms_static | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/BondStretch.cpp | |
| [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolPickler.cpp | |
| [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp | |
| [ 17%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/DaylightParser.cpp | |
| [ 17%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/StretchBend.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/DependInfo.cmake --color= | |
| [ 17%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/smarts.tab.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/OopBend.cpp | |
| [ 19%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionPickler.cpp | |
| [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Canon.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Canon.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Canon.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs/SubgraphUtils.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/TorsionAngle.cpp | |
| [ 20%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/smiles.tab.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/depend | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/Nonbonded.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionDepict.cpp | |
| [ 22%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp | |
| [ 23%] Linking CXX static library libRDKitChemTransforms_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ChemTransforms_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitChemTransforms_static.a CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o | |
| /usr/bin/ranlib libRDKitChemTransforms_static.a | |
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| [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/BondIterators.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SDWriter.cpp | |
| [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/DistanceConstraint.cpp | |
| [ 23%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp | |
| [ 23%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp | |
| [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/AngleConstraint.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Aromaticity.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp | |
| Scanning dependencies of target FragCatalog_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/build | |
| [ 23%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp | |
| [ 23%] Linking CXX static library libRDKitSmilesParse_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/SmilesParse_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitSmilesParse_static.a CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o | |
| /usr/bin/ranlib libRDKitSmilesParse_static.a | |
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| [ 23%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp | |
| [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/TorsionConstraint.cpp | |
| [ 23%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionUtils.cpp | |
| [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Kekulize.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp | |
| [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/PositionConstraint.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SmilesWriter.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/DependInfo.cmake --color= | |
| [ 23%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/MoleculeParser.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp | |
| [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDiscriminators.cpp | |
| Scanning dependencies of target Descriptors_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/build | |
| [ 23%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/Params.cpp | |
| [ 23%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Crippen.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Crippen.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/Crippen.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp | |
| [ 23%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionRunner.cpp | |
| [ 23%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target Fingerprints_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/build | |
| [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ConjugHybrid.cpp | |
| [ 23%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/Fingerprints.cpp | |
| [ 23%] Linking CXX static library libRDKitFilterCatalog_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FilterCatalog_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFilterCatalog_static.a CMakeFiles/FilterCatalog_static.dir/Filters.cpp.o CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o | |
| /usr/bin/ranlib libRDKitFilterCatalog_static.a | |
| [ 23%] Built target FilterCatalog_static | |
| [ 23%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/MolDescriptors.cpp | |
| [ 23%] Linking CXX static library libRDKitForceField_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ForceField_static.dir/cmake_clean_target.cmake | |
| [ 23%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/TDTWriter.cpp | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ForceField_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitForceField_static.a CMakeFiles/ForceField_static.dir/ForceField.cpp.o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o | |
| /usr/bin/ranlib libRDKitForceField_static.a | |
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| [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AddHs.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/AddHs.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/AddHs.cpp | |
| [ 23%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp | |
| [ 23%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/PreprocessRxn.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/PreprocessRxn.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp | |
| [ 24%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatParams.cpp | |
| [ 24%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/MolSurf.cpp | |
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| Scanning dependencies of target PartialCharges_static | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PartialCharges/GasteigerCharges.cpp | |
| [ 24%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/SanitizeRxn.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/SanitizeRxn.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/SanitizeRxn.cpp | |
| [ 24%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp | |
| [ 24%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/TplFileWriter.cpp | |
| [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Matrices.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Matrices.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Matrices.cpp | |
| [ 24%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp | |
| [ 24%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/Lipinski.cpp | |
| [ 24%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PartialCharges && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PartialCharges/GasteigerParams.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolTransforms /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolTransforms /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/DependInfo.cmake --color= | |
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| [ 24%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/PDBParser.cpp | |
| [ 24%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolTransforms && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolTransforms/MolTransforms.cpp | |
| [ 24%] Linking CXX static library libRDKitFragCatalog_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FragCatalog_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFragCatalog_static.a CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o | |
| [ 25%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/Enumerate.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Enumerate/Enumerate.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp | |
| /usr/bin/ranlib libRDKitFragCatalog_static.a | |
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| [ 25%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp | |
| [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Chirality.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Chirality.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Chirality.cpp | |
| [ 25%] Linking CXX static library libRDKitPartialCharges_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/PartialCharges_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PartialCharges && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitPartialCharges_static.a CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o | |
| /usr/bin/ranlib libRDKitPartialCharges_static.a | |
| [ 25%] Built target PartialCharges_static | |
| [ 26%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/AtomPairs.cpp | |
| [ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RingInfo.cpp | |
| [ 27%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/EnumerationPickler.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Enumerate/EnumerationPickler.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/DependInfo.cmake --color= | |
| [ 27%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MQN.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MQN.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/MQN.cpp | |
| Scanning dependencies of target ForceFieldHelpers_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/build | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/PDBWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/PDBWriter.cpp | |
| [ 28%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/UFF/AtomTyper.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/UFF/AtomTyper.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp | |
| [ 28%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/MACCS.cpp | |
| [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Conformer.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Conformer.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Conformer.cpp | |
| [ 28%] Linking CXX static library libRDKitMolTransforms_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolTransforms_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolTransforms && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolTransforms_static.a CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o | |
| /usr/bin/ranlib libRDKitMolTransforms_static.a | |
| [ 28%] Built target MolTransforms_static | |
| [ 28%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/EvenSamplePairs.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Enumerate/EvenSamplePairs.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp | |
| [ 28%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Property.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Property.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/Property.cpp | |
| [ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Renumber.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Renumber.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Renumber.cpp | |
| [ 28%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/PDBSupplier.cpp | |
| [ 28%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/UFF/Builder.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/UFF/Builder.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/DependInfo.cmake --color= | |
| [ 29%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/AUTOCORR2D.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/AUTOCORR2D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/AUTOCORR2D.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp | |
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| /usr/bin/ar qc libRDKitFingerprints_static.a CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/MMFF/AtomTyper.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/AdjustQuery.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/AdjustQuery.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers/Embedder.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitChemReactions_static.a CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions_static.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions_static.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions_static.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions_static.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions_static.dir/Enumerate/EvenSamplePairs.cpp.o | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/MMFF/Builder.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp | |
| [ 31%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/ProximityBonds.cpp | |
| [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Resonance.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Resonance.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Resonance.cpp | |
| [ 31%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Data3Ddescriptors.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Data3Ddescriptors.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MolData3Ddescriptors.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp | |
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| [ 31%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SequenceParsers.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SequenceParsers.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SequenceParsers.cpp | |
| [ 31%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionAngleM6.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionAngleM6.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp | |
| Scanning dependencies of target MolAlign_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/build | |
| [ 31%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolAlign/AlignMolecules.cpp | |
| [ 31%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/USRDescriptor.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/USRDescriptor.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/USRDescriptor.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/DependInfo.cmake --color= | |
| [ 31%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/O3AAlignMolecules.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolAlign && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign_static.dir/O3AAlignMolecules.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp | |
| [ 31%] Linking CXX static library libRDKitDistGeomHelpers_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/DistGeomHelpers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/DistGeomHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDistGeomHelpers_static.a CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o | |
| /usr/bin/ranlib libRDKitDistGeomHelpers_static.a | |
| [ 31%] Built target DistGeomHelpers_static | |
| [ 31%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SequenceWriters.cpp | |
| Scanning dependencies of target MolChemicalFeatures_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/build | |
| [ 31%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp | |
| [ 31%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionPreferences.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionPreferences.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp | |
| [ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/new_canon.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/new_canon.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/new_canon.cpp | |
| [ 31%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/PBF.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/PBF.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/PBF.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ShapeHelpers_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/build | |
| [ 32%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp | |
| [ 32%] Linking CXX static library libRDKitFileParsers_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FileParsers_static.dir/cmake_clean_target.cmake | |
| [ 32%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FileParsers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFileParsers_static.a CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o CMakeFiles/FileParsers_static.dir/PDBWriter.cpp.o CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers_static.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o | |
| /usr/bin/ranlib libRDKitFileParsers_static.a | |
| [ 32%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp | |
| [ 32%] Built target FileParsers_static | |
| [ 32%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/PMI.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/PMI.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/PMI.cpp | |
| [ 32%] Linking CXX static library libRDKitForceFieldHelpers_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ForceFieldHelpers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ForceFieldHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitForceFieldHelpers_static.a CMakeFiles/ForceFieldHelpers_static.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionPreferences.cpp.o | |
| /usr/bin/ranlib libRDKitForceFieldHelpers_static.a | |
| [ 32%] Built target ForceFieldHelpers_static | |
| [ 32%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp | |
| [ 32%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/AUTOCORR3D.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/AUTOCORR3D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/AUTOCORR3D.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/DependInfo.cmake --color= | |
| [ 32%] Linking CXX static library libRDKitGraphMol_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/GraphMol_static.dir/cmake_clean_target.cmake | |
| [ 32%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/RDF.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/RDF.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/RDF.cpp | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/GraphMol_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitGraphMol_static.a CMakeFiles/GraphMol_static.dir/Atom.cpp.o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o CMakeFiles/GraphMol_static.dir/Bond.cpp.o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o CMakeFiles/GraphMol_static.dir/Canon.cpp.o CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol_static.dir/AddHs.cpp.o CMakeFiles/GraphMol_static.dir/Matrices.cpp.o CMakeFiles/GraphMol_static.dir/Chirality.cpp.o CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o CMakeFiles/GraphMol_static.dir/Conformer.cpp.o CMakeFiles/GraphMol_static.dir/Renumber.cpp.o CMakeFiles/GraphMol_static.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol_static.dir/Resonance.cpp.o CMakeFiles/GraphMol_static.dir/new_canon.cpp.o | |
| /usr/bin/ranlib libRDKitGraphMol_static.a | |
| [ 32%] Built target GraphMol_static | |
| [ 33%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp | |
| Scanning dependencies of target MolCatalog_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/build | |
| [ 33%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp | |
| [ 33%] Linking CXX static library libRDKitMolAlign_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolAlign_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolAlign && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolAlign_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolAlign_static.a CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign_static.dir/O3AAlignMolecules.cpp.o | |
| /usr/bin/ranlib libRDKitMolAlign_static.a | |
| [ 33%] Built target MolAlign_static | |
| [ 33%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MORSE.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MORSE.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/MORSE.cpp | |
| [ 33%] Linking CXX static library libRDKitShapeHelpers_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ShapeHelpers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ShapeHelpers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitShapeHelpers_static.a CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o | |
| /usr/bin/ranlib libRDKitShapeHelpers_static.a | |
| [ 33%] Built target ShapeHelpers_static | |
| [ 33%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog/MolCatalogParams.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target MolDraw2D_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/build | |
| [ 34%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/GETAWAY.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/GETAWAY.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/GETAWAY.cpp | |
| [ 34%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2D.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D/MolDraw2D.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target FMCS_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/build | |
| [ 34%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/FMCS.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/FMCS.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS/FMCS.cpp | |
| [ 34%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DSVG.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2DSVG.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/DependInfo.cmake --color= | |
| [ 35%] Linking CXX static library libRDKitMolCatalog_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolCatalog_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolCatalog && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolCatalog_static.a CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o | |
| /usr/bin/ranlib libRDKitMolCatalog_static.a | |
| [ 35%] Built target MolCatalog_static | |
| [ 36%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DDetails.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2DDetails.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp | |
| [ 36%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/Seed.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/Seed.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS/Seed.cpp | |
| Scanning dependencies of target MolHash_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/build | |
| [ 36%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/MolHash.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash_static.dir/MolHash.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash/MolHash.cpp | |
| [ 36%] Linking CXX static library libRDKitMolChemicalFeatures_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolChemicalFeatures_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolChemicalFeatures_static.a CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o | |
| /usr/bin/ranlib libRDKitMolChemicalFeatures_static.a | |
| [ 36%] Built target MolChemicalFeatures_static | |
| [ 36%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/WHIM.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/WHIM.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/WHIM.cpp | |
| [ 36%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/MaximumCommonSubgraph.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/MaximumCommonSubgraph.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp | |
| [ 36%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/HashToString.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash_static.dir/HashToString.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash/HashToString.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MMPA /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MMPA /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/DependInfo.cmake --color= | |
| [ 36%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DUtils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D_static.dir/MolDraw2DUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target MMPA_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/build | |
| [ 36%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/MMPA.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MMPA && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA_static.dir/MMPA.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MMPA/MMPA.cpp | |
| [ 36%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/SubstructMatchCustom.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS_static.dir/SubstructMatchCustom.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS/SubstructMatchCustom.cpp | |
| Scanning dependencies of target StructChecker_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/build | |
| [ 36%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructChecker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StructChecker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/StructChecker.cpp | |
| [ 36%] Linking CXX static library libRDKitMolHash_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolHash_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolHash && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolHash_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolHash_static.a CMakeFiles/MolHash_static.dir/MolHash.cpp.o CMakeFiles/MolHash_static.dir/HashToString.cpp.o | |
| /usr/bin/ranlib libRDKitMolHash_static.a | |
| [ 36%] Built target MolHash_static | |
| [ 36%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructCheckerOptions.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StructCheckerOptions.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ReducedGraphs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ReducedGraphs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/DependInfo.cmake --color= | |
| [ 36%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructureFlags.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StructureFlags.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/StructureFlags.cpp | |
| Scanning dependencies of target ReducedGraphs_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/build | |
| [ 36%] Linking CXX static library libRDKitMolDraw2D_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MolDraw2D_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDraw2D && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMolDraw2D_static.a CMakeFiles/MolDraw2D_static.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D_static.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D_static.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D_static.dir/MolDraw2DUtils.cpp.o | |
| /usr/bin/ranlib libRDKitMolDraw2D_static.a | |
| [ 36%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/ReducedGraphs.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ReducedGraphs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ReducedGraphs_static.dir/ReducedGraphs.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp | |
| [ 36%] Built target MolDraw2D_static | |
| [ 37%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Utilites.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/Utilites.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/Utilites.cpp | |
| [ 37%] Linking CXX static library libRDKitMMPA_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/MMPA_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MMPA && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/MMPA_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitMMPA_static.a CMakeFiles/MMPA_static.dir/MMPA.cpp.o | |
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| [ 37%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Pattern.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/Pattern.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/Pattern.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Trajectory /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Trajectory /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/DependInfo.cmake --color= | |
| [ 37%] Linking CXX static library libRDKitFMCS_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/FMCS_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FMCS && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/FMCS_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitFMCS_static.a CMakeFiles/FMCS_static.dir/FMCS.cpp.o CMakeFiles/FMCS_static.dir/Seed.cpp.o CMakeFiles/FMCS_static.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS_static.dir/SubstructMatchCustom.cpp.o | |
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| [ 37%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Stereo.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/Stereo.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/Stereo.cpp | |
| Scanning dependencies of target Trajectory_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/build | |
| [ 38%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/Trajectory.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Trajectory && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Trajectory_static.dir/Trajectory.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Trajectory/Trajectory.cpp | |
| [ 38%] Linking CXX static library libRDKitDescriptors_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Descriptors_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Descriptors_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitDescriptors_static.a CMakeFiles/Descriptors_static.dir/Crippen.cpp.o CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MQN.cpp.o CMakeFiles/Descriptors_static.dir/Property.cpp.o CMakeFiles/Descriptors_static.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors_static.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors_static.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors_static.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors_static.dir/PBF.cpp.o CMakeFiles/Descriptors_static.dir/PMI.cpp.o CMakeFiles/Descriptors_static.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors_static.dir/RDF.cpp.o CMakeFiles/Descriptors_static.dir/MORSE.cpp.o CMakeFiles/Descriptors_static.dir/GETAWAY.cpp.o CMakeFiles/Descriptors_static.dir/WHIM.cpp.o | |
| /usr/bin/ranlib libRDKitDescriptors_static.a | |
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| [ 38%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/AtomSymbolMatch.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/AtomSymbolMatch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SubstructLibrary /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SubstructLibrary /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/DependInfo.cmake --color= | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RGroupDecomposition /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RGroupDecomposition /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target SubstructLibrary_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/build | |
| [ 38%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary_static.dir/SubstructLibrary.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SubstructLibrary && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructLibrary_static.dir/SubstructLibrary.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp | |
| Scanning dependencies of target RGroupDecomposition_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/build | |
| [ 39%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/RGroupDecomp.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RGroupDecomposition && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RGroupDecomposition_static.dir/RGroupDecomp.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Query /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Query /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target testQuery | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build | |
| [ 39%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Query && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testQuery.dir/test.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Query/test.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataManip/MetricMatrixCalc /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataManip/MetricMatrixCalc /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target testMatCalc | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build | |
| [ 39%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataManip/MetricMatrixCalc && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp | |
| [ 39%] Linking CXX static library libRDKitReducedGraphs_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ReducedGraphs_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ReducedGraphs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitReducedGraphs_static.a CMakeFiles/ReducedGraphs_static.dir/ReducedGraphs.cpp.o | |
| /usr/bin/ranlib libRDKitReducedGraphs_static.a | |
| [ 39%] Built target ReducedGraphs_static | |
| [ 39%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StripSmallFragments.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/StripSmallFragments.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/StripSmallFragments.cpp | |
| [ 39%] Linking CXX static library libRDKitTrajectory_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/Trajectory_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Trajectory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/Trajectory_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitTrajectory_static.a CMakeFiles/Trajectory_static.dir/Trajectory.cpp.o | |
| /usr/bin/ranlib libRDKitTrajectory_static.a | |
| [ 39%] Built target Trajectory_static | |
| [ 39%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/ReCharge.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/ReCharge.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/ReCharge.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target SimDivPickers_static | |
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| [ 39%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/DistPicker.cpp | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataManip/MetricMatrixCalc && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
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| [ 39%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/MaxMinPicker.cpp | |
| [ 39%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Tautomer.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker_static.dir/Tautomer.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker/Tautomer.cpp | |
| [ 39%] Linking CXX executable testQuery | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Query && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 39%] Built target testQuery | |
| [ 40%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/HierarchicalClusterPicker.cpp | |
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| Scanning dependencies of target hc | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build | |
| [ 40%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc.dir/hc.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh/hc.c | |
| [ 40%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc.dir/hcdriver.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh/hcdriver.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target hc_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/build | |
| [ 40%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/hc.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc_static.dir/hc.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh/hc.c | |
| [ 40%] Linking C shared library ../../../../lib/libRDKithc.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang -Wno-array-bounds -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../../../lib/libRDKithc.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKithc.1.dylib CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.2017.09.3.dylib ../../../../lib/libRDKithc.1.dylib ../../../../lib/libRDKithc.dylib | |
| [ 41%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/hcdriver.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hc_static.dir/hcdriver.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh/hcdriver.c | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/InfoTheory /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/InfoTheory /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/DependInfo.cmake --color= | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= | |
| [ 41%] Linking C static library libRDKithc_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/hc_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/Cluster/Murtagh && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/hc_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKithc_static.a CMakeFiles/hc_static.dir/hc.c.o CMakeFiles/hc_static.dir/hcdriver.c.o | |
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| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/DependInfo.cmake --color= | |
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| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/build | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/DependInfo.cmake --color= | |
| [ 41%] Linking CXX static library libRDKitSubstructLibrary_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/SubstructLibrary_static.dir/cmake_clean_target.cmake | |
| [ 41%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/InfoBitRanker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/InfoTheory && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/InfoTheory_static.dir/InfoBitRanker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/InfoTheory/InfoBitRanker.cpp | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SubstructLibrary && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitSubstructLibrary_static.a CMakeFiles/SubstructLibrary_static.dir/SubstructLibrary.cpp.o | |
| /usr/bin/ranlib libRDKitSubstructLibrary_static.a | |
| [ 41%] Built target SubstructLibrary_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target ChemicalFeatures | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build | |
| [ 41%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures/FreeChemicalFeature.cpp | |
| Scanning dependencies of target ChemicalFeatures_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/build | |
| [ 41%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemicalFeatures_static.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures/FreeChemicalFeature.cpp | |
| Scanning dependencies of target rdkit.so | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/build | |
| [ 41%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/adapter.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/adapter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/adapter.cpp | |
| Scanning dependencies of target DataStructs | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build | |
| [ 41%] Linking CXX static library libRDKitStructChecker_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/StructChecker_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/StructChecker && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/StructChecker_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitStructChecker_static.a CMakeFiles/StructChecker_static.dir/StructChecker.cpp.o CMakeFiles/StructChecker_static.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker_static.dir/StructureFlags.cpp.o CMakeFiles/StructChecker_static.dir/Utilites.cpp.o CMakeFiles/StructChecker_static.dir/Pattern.cpp.o CMakeFiles/StructChecker_static.dir/Stereo.cpp.o CMakeFiles/StructChecker_static.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker_static.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker_static.dir/ReCharge.cpp.o CMakeFiles/StructChecker_static.dir/Tautomer.cpp.o | |
| /usr/bin/ranlib libRDKitStructChecker_static.a | |
| [ 41%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/BitVect.cpp | |
| [ 41%] Built target StructChecker_static | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target EigenSolvers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build | |
| [ 41%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp | |
| [ 41%] Linking CXX static library libRDKitSimDivPickers_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/SimDivPickers_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitSimDivPickers_static.a CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitSimDivPickers_static.a(MaxMinPicker.cpp.o) has no symbols | |
| /usr/bin/ranlib libRDKitSimDivPickers_static.a | |
| /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libRDKitSimDivPickers_static.a(MaxMinPicker.cpp.o) has no symbols | |
| [ 41%] Built target SimDivPickers_static | |
| [ 41%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/SparseBitVect.cpp | |
| [ 41%] Linking CXX static library libRDKitRGroupDecomposition_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RGroupDecomposition && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/RGroupDecomposition_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RGroupDecomposition && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitRGroupDecomposition_static.a CMakeFiles/RGroupDecomposition_static.dir/RGroupDecomp.cpp.o | |
| /usr/bin/ranlib libRDKitRGroupDecomposition_static.a | |
| [ 41%] Built target RGroupDecomposition_static | |
| [ 41%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bfp_op.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bfp_op.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/bfp_op.c | |
| [ 41%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitChemicalFeatures.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitChemicalFeatures.1.dylib CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o | |
| [ 41%] Linking CXX static library libRDKitChemicalFeatures_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/ChemicalFeatures_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitChemicalFeatures_static.a CMakeFiles/ChemicalFeatures_static.dir/FreeChemicalFeature.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.2017.09.3.dylib ../../lib/libRDKitChemicalFeatures.1.dylib ../../lib/libRDKitChemicalFeatures.dylib | |
| /usr/bin/ranlib libRDKitChemicalFeatures_static.a | |
| [ 41%] Built target ChemicalFeatures_static | |
| [ 41%] Built target ChemicalFeatures | |
| [ 42%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/ExplicitBitVect.cpp | |
| [ 42%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/cache.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/cache.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/cache.c | |
| [ 42%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/guc.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/guc.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/guc.c | |
| [ 42%] Linking CXX static library libRDKitInfoTheory_static.a | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -P CMakeFiles/InfoTheory_static.dir/cmake_clean_target.cmake | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ML/InfoTheory && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory_static.dir/link.txt --verbose=1 | |
| /usr/bin/ar qc libRDKitInfoTheory_static.a CMakeFiles/InfoTheory_static.dir/InfoBitRanker.cpp.o | |
| /usr/bin/ranlib libRDKitInfoTheory_static.a | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= | |
| [ 42%] Built target InfoTheory_static | |
| [ 42%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/Utils.cpp | |
| [ 42%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/low_gist.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/low_gist.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/low_gist.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= | |
| [ 42%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/base64.cpp | |
| Scanning dependencies of target testRDValue | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build | |
| Scanning dependencies of target RDBoost | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build | |
| [ 43%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/testRDValue.cpp | |
| [ 43%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDBoost_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap.cpp | |
| [ 43%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/mol_op.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/mol_op.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/mol_op.c | |
| [ 43%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../../lib/libRDKitEigenSolvers.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitEigenSolvers.1.dylib CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.2017.09.3.dylib ../../../lib/libRDKitEigenSolvers.1.dylib ../../../lib/libRDKitEigenSolvers.dylib | |
| [ 43%] Built target EigenSolvers | |
| [ 43%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/BitOps.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= | |
| [ 43%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/rdkit_gist.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/rdkit_gist.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/rdkit_gist.c | |
| Scanning dependencies of target testDict | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build | |
| [ 43%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDict.dir/testDict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/testDict.cpp | |
| [ 43%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/DiscreteDistMat.cpp | |
| [ 43%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bfp_gist.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bfp_gist.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/bfp_gist.c | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= | |
| [ 44%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bfp_gin.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bfp_gin.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/bfp_gin.c | |
| Scanning dependencies of target testMatrices | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build | |
| [ 44%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/testMatrices.cpp | |
| [ 44%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/DiscreteValueVect.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= | |
| Scanning dependencies of target SimDivPickers | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build | |
| [ 44%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/DistPicker.cpp | |
| [ 44%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/bitstring.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/bitstring.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/bitstring.c | |
| [ 44%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/FPBReader.cpp | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= | |
| [ 44%] Linking CXX shared library ../../lib/libRDKitRDBoost.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitRDBoost.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitRDBoost.1.dylib CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib | |
| [ 44%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/MaxMinPicker.cpp | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.2017.09.3.dylib ../../lib/libRDKitRDBoost.1.dylib ../../lib/libRDKitRDBoost.dylib | |
| [ 44%] Built target RDBoost | |
| [ 44%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/rdkit_io.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/rdkit_io.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/rdkit_io.c | |
| Scanning dependencies of target testChemicalFeatures | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build | |
| [ 45%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures/testChemicalFeatures.cpp | |
| [ 45%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers/HierarchicalClusterPicker.cpp | |
| [ 45%] Linking CXX executable testRDValue | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 45%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/rxn_op.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/rxn_op.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/rxn_op.c | |
| [ 46%] Linking CXX executable testMatrices | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 | |
| [ 46%] Built target testRDValue | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 46%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/MultiFPBReader.cpp | |
| make[2]: *** No rule to make target `/usr/local/lib/libinchi.dylib_static', needed by `Code/PgSQL/rdkit/rdkit.so'. Stop. | |
| make[2]: *** Waiting for unfinished jobs.... | |
| [ 46%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/sfp_op.c.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit && /usr/local/Homebrew/Library/Homebrew/shims/super/clang -DBUILD_AVALON_SUPPORT -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/usr/local/include/server -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.so.dir/sfp_op.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/PgSQL/rdkit/sfp_op.c | |
| [ 46%] Built target testMatrices | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3 /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= | |
| make[1]: *** [Code/PgSQL/rdkit/CMakeFiles/rdkit.so.dir/all] Error 2 | |
| make[1]: *** Waiting for unfinished jobs.... | |
| Scanning dependencies of target rdBase | |
| /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build | |
| [ 46%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap && /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -F/usr/local/Cellar/python/3.6.5/Frameworks -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap/RDBase.cpp | |
| [ 46%] Linking CXX executable testDict | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/testDict.dir/testDict.cpp.o -o testDict ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 46%] Built target testDict | |
| [ 46%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitSimDivPickers.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitSimDivPickers.1.dylib CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.2017.09.3.dylib ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/SimDivPickers && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.2017.09.3.dylib ../../lib/libRDKitSimDivPickers.1.dylib ../../lib/libRDKitSimDivPickers.dylib | |
| [ 46%] Linking CXX executable testChemicalFeatures | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ChemicalFeatures && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../../lib/libRDKitChemicalFeatures.2017.09.3.dylib ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 46%] Built target SimDivPickers | |
| [ 46%] Built target testChemicalFeatures | |
| [ 46%] Linking CXX shared library ../../lib/libRDKitDataStructs.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitDataStructs.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitDataStructs.1.dylib CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.2017.09.3.dylib ../../lib/libRDKitDataStructs.1.dylib ../../lib/libRDKitDataStructs.dylib | |
| [ 46%] Built target DataStructs | |
| [ 46%] Linking CXX shared module ../../../rdkit/rdBase.so | |
| cd /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap && /usr/local/Cellar/cmake/3.11.0/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 | |
| /usr/local/Homebrew/Library/Homebrew/shims/super/clang++ -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -bundle -Wl,-headerpad_max_install_names -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDBoost.2017.09.3.dylib /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/Python /usr/local/lib/libboost_python3-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_chrono-mt.dylib /usr/local/lib/libboost_date_time-mt.dylib /usr/local/lib/libboost_atomic-mt.dylib /usr/local/lib/libboost_serialization-mt.dylib ../../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| [ 46%] Built target rdBase | |
| make: *** [all] Error 2 | |
| HOMEBREW_VERSION: 1.5.13 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 0f4e22e28d3b65a6c8dbb0f270bb6d262a2429d6 | |
| Last commit: 3 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 41dd22806a81a5b27ba0d4d09dc90e4275803a19 | |
| Core tap last commit: 5 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CACHE: /Users/david/Library/Caches/Homebrew | |
| HOMEBREW_ARCHFLAGS: | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CCCFG: sa | |
| HOMEBREW_CXX: clang++ | |
| HOMEBREW_DEPENDENCIES: cmake,boost,eigen,gdbm,openssl,readline,sqlite,xz,python,inchi,postgresql,numpy,boost-python3 | |
| HOMEBREW_ENABLE_AUTO_UPDATE_MIGRATION: 1 | |
| HOMEBREW_ERROR_PIPE: /tmp/homebrew20180331-94828-owje3t/socket | |
| HOMEBREW_FORMULA_PREFIX: /usr/local/Cellar/rdkit/2017.09.3 | |
| HOMEBREW_INCLUDE_PATHS: /usr/local/opt/openssl/include:/usr/local/opt/readline/include:/usr/local/opt/sqlite/include | |
| HOMEBREW_ISYSTEM_PATHS: /usr/local/include:/usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| HOMEBREW_LIBRARY_PATHS: /usr/local/opt/openssl/lib:/usr/local/opt/readline/lib:/usr/local/opt/sqlite/lib:/usr/local/lib:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| HOMEBREW_OPT: /usr/local/opt | |
| HOMEBREW_OPTFLAGS: -march=native | |
| HOMEBREW_OPTIMIZATION_LEVEL: Os | |
| HOMEBREW_PREFER_CLT_PROXIES: 1 | |
| HOMEBREW_TEMP: /tmp | |
| CPU: octa-core 64-bit skylake | |
| Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby | |
| Clang: 9.1 build 902 | |
| Git: 2.15.1 => /Applications/Xcode.app/Contents/Developer/usr/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Perl: N/A | |
| Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/bin/python3.6 | |
| Ruby: N/A | |
| Java: 1.8.0_91 | |
| macOS: 10.13.4-x86_64 | |
| Xcode: 9.3 | |
| CLT: 9.3.0.0.1.1521514116 | |
| X11: 2.7.9 => /opt/X11 | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CXX: clang++ | |
| MAKEFLAGS: -j8 | |
| CMAKE_PREFIX_PATH: /usr/local/opt/openssl:/usr/local/opt/readline:/usr/local/opt/sqlite:/usr/local | |
| CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| CMAKE_FRAMEWORK_PATH: /usr/local/opt/python/Frameworks | |
| PKG_CONFIG_PATH: /usr/local/opt/openssl/lib/pkgconfig:/usr/local/opt/sqlite/lib/pkgconfig:/usr/local/opt/xz/lib/pkgconfig:/usr/local/opt/python/lib/pkgconfig:/usr/local/opt/postgresql/lib/pkgconfig:/usr/local/opt/eigen/share/pkgconfig | |
| PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.13 | |
| ACLOCAL_PATH: /usr/local/share/aclocal | |
| PATH: /usr/local/Homebrew/Library/Homebrew/shims/super:/usr/local/opt/cmake/bin:/usr/local/opt/gdbm/bin:/usr/local/opt/openssl/bin:/usr/local/opt/sqlite/bin:/usr/local/opt/xz/bin:/usr/local/opt/python/bin:/usr/local/opt/inchi/bin:/usr/local/opt/postgresql/bin:/usr/local/opt/numpy/bin:/usr/bin:/bin:/usr/sbin:/sbin |
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| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/layout.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/layout.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/layout.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/layout.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/layout.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symboltable.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symboltable.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symboltable.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost_static.dir/Wrap.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost_static.dir/Wrap.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDBoost/Wrap.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Invariant.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Invariant.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Invariant.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Invariant.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/AvalonLib_static.dir/AvalonTools.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/AvalonTools.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/AvalonLib_static.dir/AvalonTools.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/AvalonTools.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDInchiLib_static.dir/inchi.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API/inchi.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDInchiLib_static.dir/inchi.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/INCHI-API/inchi.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/BitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/BitVect.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/BitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/BitVect.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/patclean.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/patclean.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/patclean.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/patclean.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symboltable.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symboltable.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/patclean.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/patclean.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/utilities.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/utilities.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/utilities.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/utilities.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/utilities.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/utilities.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/utilities.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/utilities.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/types.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/types.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/types.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/types.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/types.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/types.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symbol_lists.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symbol_lists.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/symbol_lists.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symbol_lists.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/stereo.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/stereo.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symbol_lists.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/symbol_lists.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/stereo.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/stereo.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/SparseBitVect.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/SparseBitVect.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/set.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/set.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/set.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/set.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/perceive.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/perceive.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/perceive.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/perceive.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/local.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/local.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/local.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/local.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/graph.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/graph.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/graph.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/graph.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/geometry.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/geometry.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/geometry.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/geometry.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/geometry.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/geometry.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/utils.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/utils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/forio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/forio.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/forio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/forio.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/utils.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/utils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/ExplicitBitVect.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/ExplicitBitVect.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/depictutil.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/depictutil.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/depictutil.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/depictutil.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/forio.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/forio.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/denormal.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/denormal.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/denormal.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/denormal.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/depictutil.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/depictutil.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/RDLog.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/RDLog.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/denormal.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/denormal.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/casutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/casutils.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/casutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/casutils.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/ssmatch.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/ssmatch.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/ssmatch.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/ssmatch.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/casutils.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/casutils.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/ssmatch.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/ssmatch.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/ssmatch.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/ssmatch.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/RDLog.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/RDLog.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/rtutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/rtutils.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/rtutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/rtutils.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/rtutils.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/rtutils.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Dict.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Dict.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/smi2mol.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/smi2mol.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/Utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/Utils.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/Utils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/Utils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/smi2mol.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/smi2mol.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/point.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/point.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/point.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/point.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Dict.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/Dict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/Dict.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/LocaleSwitcher.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/LocaleSwitcher.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/didepict.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/didepict.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/didepict.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/didepict.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/Transform2D.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/Transform2D.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/base64.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/base64.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/base64.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/base64.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/pattern.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/pattern.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/pattern.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/pattern.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/canonizer.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/canonizer.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/canonizer.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/canonizer.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/canonizer.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/canonizer.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/versions.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/versions.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/BitOps.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/BitOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/BitOps.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/Transform3D.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/Transform3D.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/aacheck.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/aacheck.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/aacheck.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/aacheck.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/fixcharges.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/fixcharges.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/fixcharges.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/fixcharges.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/struchk.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/struchk.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/struchk.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitRDGeneral.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitRDGeneral.1.dylib CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| superenv executed: clang++ -pipe -w -Os -march=native -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitRDGeneral.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitRDGeneral.1.dylib CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/struchk.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/struchk.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/DiscreteDistMat.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/DiscreteDistMat.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/reaccsio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/reaccsio.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/reaccsio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/reaccsio.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Alignment/AlignPoints.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Alignment/AlignPoints.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/reaccsio.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/reaccsio.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/LocaleSwitcher.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/LocaleSwitcher.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/LocaleSwitcher.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/hashcode.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/hashcode.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib_static.dir/SourceDistribution/common/hashcode.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/hashcode.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/hashcode.c | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang -pipe -w -Os -march=native -DBUILD_AVALON_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Davalon_clib_EXPORTS -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common -Wno-array-bounds -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/AvalonTools/SourceDistribution/common/hashcode.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/UniformGrid3D.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/UniformGrid3D.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/versions.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/versions.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeneral_static.dir/versions.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/RDGeneral/versions.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/DiscreteValueVect.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/DiscreteValueVect.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang called with: -Wno-array-bounds -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitavalon_clib.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitavalon_clib.1.dylib CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/utilities.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/ssmatch.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o | |
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| superenv executed: clang -pipe -w -Os -march=native -Wno-array-bounds -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitavalon_clib.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitavalon_clib.1.dylib CMakeFiles/avalon_clib.dir/SourceDistribution/common/layout.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symboltable.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/patclean.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/utilities.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/symbol_lists.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/stereo.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/set.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/perceive.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/local.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/graph.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/geometry.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/forio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/depictutil.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/denormal.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/casutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/ssmatch.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/rtutils.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/smi2mol.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/didepict.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/pattern.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/canonizer.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/aacheck.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/fixcharges.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/struchk.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/reaccsio.c.o CMakeFiles/avalon_clib.dir/SourceDistribution/common/hashcode.c.o -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Geometry/GridUtils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/FPBReader.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/FPBReader.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/MultiFPBReader.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DataStructs/MultiFPBReader.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer/BFGSOpt.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Numerics/Optimizer/BFGSOpt.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/DistGeomUtils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/Catalog.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/Catalog.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/Catalog.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/Catalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/Catalog.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/ForceField.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/ForceField.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/ForceField.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/ForceField.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/TriangleSmooth.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/TriangleSmooth.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/RDDepictor.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/RDDepictor.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogParams.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogParams.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/AngleBend.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/AngleBend.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Atom.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Atom.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Atom.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Atom.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogParams.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogParams.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogEntry.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogEntry.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogEntry.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/Catalogs/CatalogEntry.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/EmbeddedFrag.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/EmbeddedFrag.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/DistViolationContrib.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/DistViolationContrib.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/BondStretch.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/BondStretch.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitCatalogs.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib | |
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| superenv executed: clang++ -pipe -w -Os -march=native -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2017.9.3 -o ../../lib/libRDKitCatalogs.2017.09.3.dylib -install_name /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/lib/libRDKitCatalogs.1.dylib CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.2017.09.3.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib /usr/local/lib/libboost_thread-mt.dylib /usr/local/lib/libboost_system-mt.dylib -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include -L/usr/local/opt/openssl/lib -L/usr/local/opt/readline/lib -L/usr/local/opt/sqlite/lib -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryAtom.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryAtom.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/DepictUtils.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Depictor/DepictUtils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryBond.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryBond.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/ChiralViolationContrib.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/DistGeom/ChiralViolationContrib.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Bond.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Bond.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Bond.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Bond.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Nonbonded.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Nonbonded.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Inversion.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Inversion.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolOps.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolOps.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/TorsionAngle.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/TorsionAngle.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FindRings.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/FindRings.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FindRings.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesParse.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesParse.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/DistanceConstraint.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/DistanceConstraint.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ROMol.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ROMol.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ROMol.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesParseOps.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RWMol.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/RWMol.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/RWMol.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/AngleConstraint.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/AngleConstraint.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/Mol2FileParser.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/Mol2FileParser.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PeriodicTable.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/PeriodicTable.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesWrite.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmilesWrite.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/TorsionConstraint.cpp | |
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| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/PositionConstraint.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/PositionConstraint.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileParser.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileParser.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct/SubstructMatch.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct/SubstructMatch.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/atomic_data.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/atomic_data.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct/SubstructUtils.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Substruct/SubstructUtils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/Reaction.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/Reaction.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Params.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/UFF/Params.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryOps.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/QueryOps.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmartsWrite.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/SmartsWrite.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/MDLParser.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/MDLParser.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/AngleBend.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/AngleBend.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileStereochem.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileStereochem.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileWriter.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/MolFileWriter.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/BondStretch.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/BondStretch.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolPickler.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolPickler.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/CXSmilesOps.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/DaylightParser.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/DaylightParser.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/StretchBend.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/StretchBend.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/smarts.tab.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/smarts.tab.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs/Subgraphs.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs/Subgraphs.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/OopBend.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/OopBend.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionPickler.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionPickler.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Canon.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Canon.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Canon.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Canon.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs/SubgraphUtils.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/External/boost-numeric-bindings -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Subgraphs/SubgraphUtils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/TorsionAngle.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/TorsionAngle.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/smiles.tab.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/smiles.tab.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/Filters.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/Filters.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/Filters.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/Filters.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionWriter.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionWriter.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SDMolSupplier.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SDMolSupplier.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/Nonbonded.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/Nonbonded.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/AtomIterators.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/AtomIterators.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/lex.yysmarts.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionDepict.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionDepict.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/BondIterators.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/BondIterators.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SDWriter.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SDWriter.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/DistanceConstraint.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/DistanceConstraint.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/SmilesParse/lex.yysmiles.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/AngleConstraint.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/AngleConstraint.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Aromaticity.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Aromaticity.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FilterMatchers.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/TorsionConstraint.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/TorsionConstraint.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionUtils.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionUtils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Kekulize.cpp | |
| superenv removed: -Wall -Wextra | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Kekulize.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/PositionConstraint.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/PositionConstraint.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SmilesWriter.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/SmilesWriter.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/MoleculeParser.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/MoleculeParser.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDiscriminators.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/MolDiscriminators.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/Params.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/ForceField/MMFF/Params.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Crippen.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/Crippen.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/Crippen.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/Crippen.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FileParsers/TDTMolSupplier.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionRunner.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ChemReactions/ReactionRunner.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ConjugHybrid.cpp | |
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| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/ConjugHybrid.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/Fingerprints.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Fingerprints/Fingerprints.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| clang++ called with: -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o -c /tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code/GraphMol/Descriptors/MolDescriptors.cpp | |
| superenv removed: -Wall -Wextra | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/openssl/include -I/usr/local/opt/readline/include -I/usr/local/opt/sqlite/include | |
| superenv executed: clang++ -pipe -w -Os -march=native -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/local/include/inchi -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -isystem /usr/local/include -I/tmp/rdkit-20180331-95794-bxojr4/rdkit-Release_2017_09_3/Code -I/usr/local/include/eigen3 -mpopcnt -std=c++11 -stdlib=libc++ -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -DNDEBUG -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors_static.dir/ |
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