Created
June 23, 2017 12:15
-
-
Save serverhorror/38bb1f6be178768be201a31e1dc0218d to your computer and use it in GitHub Desktop.
This file has been truncated, but you can view the full file.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| == 2017-06-23 07:58:18,322 easyblock.py:262 INFO This is EasyBuild 3.2.1 (framework: 3.2.1, easyblocks: 3.2.1) on host ip-10-4-79-235.localdomain. | |
| == 2017-06-23 07:58:18,322 easyblock.py:268 INFO This is easyblock EB_R from module easybuild.easyblocks.r.r (/apps/prod/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyblocks-3.2.1-py2.7.egg/easybuild/easyblocks/r/r.pyo) | |
| == 2017-06-23 07:58:18,323 easyblock.py:753 INFO Build dir set to /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2 | |
| == 2017-06-23 07:58:18,323 easyblock.py:792 INFO Software install dir set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 | |
| == 2017-06-23 07:58:18,323 easyblock.py:797 INFO Module install dir set to /apps/prod/easybuild/modules/all | |
| == 2017-06-23 07:58:18,323 easyblock.py:247 INFO Init completed for application name R version 3.4.0 | |
| == 2017-06-23 07:58:18,323 easyblock.py:2508 INFO Obtained application instance of for R (easyblock: None) | |
| == 2017-06-23 07:58:18,324 build_log.py:225 INFO building and installing R/3.4.0-foss-2015a-bare.perftest2... | |
| == 2017-06-23 07:58:18,324 build_log.py:225 INFO fetching files... | |
| == 2017-06-23 07:58:18,324 easyblock.py:2301 INFO Starting fetch step | |
| == 2017-06-23 07:58:18,324 easyblock.py:2304 INFO Running method fetch_step part of step fetch | |
| == 2017-06-23 07:58:18,324 easyblock.py:1463 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2017-06-23 07:58:18,325 filetools.py:298 INFO Command eb found at /apps/prod/easybuild/software/EasyBuild/3.2.1/bin/eb | |
| == 2017-06-23 07:58:18,325 easyblock.py:590 INFO Found file R-3.4.0.tar.gz at /apps/prod/easybuild/sources/r/R/R-3.4.0.tar.gz | |
| == 2017-06-23 07:58:18,326 easyblock.py:351 INFO Added sources: [{'path': '/apps/prod/easybuild/sources/r/R/R-3.4.0.tar.gz', 'cmd': None, 'finalpath': '/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2', 'name': 'R-3.4.0.tar.gz', 'checksum': None}] | |
| == 2017-06-23 07:58:18,326 easyblock.py:1504 INFO no patches provided | |
| == 2017-06-23 07:58:18,394 easyblock.py:1513 INFO md5 checksum for /apps/prod/easybuild/sources/r/R/R-3.4.0.tar.gz: 75083c23d507b9c16d5c6afbd7a827e7 | |
| == 2017-06-23 07:58:18,394 easyblock.py:1530 INFO Checking dirs that need to be created: ['/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2', '/apps/prod/easybuild/modules/all/R', '/apps/prod/easybuild/modules/lang/R'] | |
| == 2017-06-23 07:58:18,395 build_log.py:225 INFO creating build dir, resetting environment... | |
| == 2017-06-23 07:58:18,395 easyblock.py:2301 INFO Starting ready step | |
| == 2017-06-23 07:58:18,395 easyblock.py:2304 INFO Running method check_readiness_step part of step ready | |
| == 2017-06-23 07:58:18,396 run.py:162 INFO running cmd: ulimit -u | |
| == 2017-06-23 07:58:18,402 easyblock.py:1421 INFO Setting parallelism: 2 | |
| == 2017-06-23 07:58:18,441 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-06-23 07:58:18,441 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:18,442 easyblock.py:1426 WARNING Loaded modules detected: ['EasyBuild/3.2.1'] | |
| == 2017-06-23 07:58:18,442 easyblock.py:1454 INFO Removing existing module file /apps/prod/easybuild/modules/all/R/3.4.0-foss-2015a-bare.perftest2.lua | |
| == 2017-06-23 07:58:18,443 easyblock.py:2304 INFO Running method make_builddir part of step ready | |
| == 2017-06-23 07:58:18,443 filetools.py:1045 INFO Creating directory /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2 (parents: True, set_gid: False, sticky: False) | |
| == 2017-06-23 07:58:18,443 easyblock.py:2304 INFO Running method env_reset_changes part of step ready | |
| == 2017-06-23 07:58:18,444 easyblock.py:2304 INFO Running method handle_iterate_opts part of step ready | |
| == 2017-06-23 07:58:18,444 build_log.py:225 INFO unpacking... | |
| == 2017-06-23 07:58:18,444 easyblock.py:2301 INFO Starting source step | |
| == 2017-06-23 07:58:18,444 easyblock.py:2304 INFO Running method checksum_step part of step source | |
| == 2017-06-23 07:58:18,444 easyblock.py:1546 INFO Checksum verification for /apps/prod/easybuild/sources/r/R/R-3.4.0.tar.gz using None passed. | |
| == 2017-06-23 07:58:18,445 easyblock.py:2304 INFO Running method extract_step part of step source | |
| == 2017-06-23 07:58:18,445 easyblock.py:1553 INFO Unpacking source R-3.4.0.tar.gz | |
| == 2017-06-23 07:58:18,445 run.py:162 INFO running cmd: tar xzf /apps/prod/easybuild/sources/r/R/R-3.4.0.tar.gz | |
| == 2017-06-23 07:58:19,072 build_log.py:225 INFO patching... | |
| == 2017-06-23 07:58:19,072 easyblock.py:2301 INFO Starting patch step | |
| == 2017-06-23 07:58:19,073 easyblock.py:2304 INFO Running method patch_step part of step patch | |
| == 2017-06-23 07:58:19,073 build_log.py:225 INFO preparing... | |
| == 2017-06-23 07:58:19,073 easyblock.py:2301 INFO Starting prepare step | |
| == 2017-06-23 07:58:19,073 easyblock.py:2304 INFO Running method prepare_step part of step prepare | |
| == 2017-06-23 07:58:19,178 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 07:58:19,179 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,250 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib') | |
| == 2017-06-23 07:58:19,250 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,325 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib') | |
| == 2017-06-23 07:58:19,326 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,403 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib') | |
| == 2017-06-23 07:58:19,403 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,484 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib') | |
| == 2017-06-23 07:58:19,484 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,571 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib') | |
| == 2017-06-23 07:58:19,571 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,661 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib') | |
| == 2017-06-23 07:58:19,662 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,753 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib') | |
| == 2017-06-23 07:58:19,753 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 07:58:19,755 toolchain.py:598 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2017-06-23 07:58:19,756 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2017-06-23 07:58:19,756 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2017-06-23 07:58:19,756 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2017-06-23 07:58:19,756 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2017-06-23 07:58:19,756 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2017-06-23 07:58:19,757 compiler.py:322 INFO _set_optimal_architecture: using O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic as optarch for x86_64. | |
| == 2017-06-23 07:58:19,763 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 07:58:19,768 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 07:58:19,775 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 07:58:19,776 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib64 was not found | |
| == 2017-06-23 07:58:19,778 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib64 was not found | |
| == 2017-06-23 07:58:19,778 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib64 was not found | |
| == 2017-06-23 07:58:19,778 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib64 was not found | |
| == 2017-06-23 07:58:19,779 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib64 was not found | |
| == 2017-06-23 07:58:19,779 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib64 was not found | |
| == 2017-06-23 07:58:19,779 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib64 was not found | |
| == 2017-06-23 07:58:19,779 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib64 was not found | |
| == 2017-06-23 07:58:19,783 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,783 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,783 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,783 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,784 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,784 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,784 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,784 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,784 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,784 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,784 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,785 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,785 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,785 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,785 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,785 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,785 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2017-06-23 07:58:19,785 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2017-06-23 07:58:19,786 environment.py:97 INFO Environment variable CFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,786 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,786 environment.py:97 INFO Environment variable CPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include (previously undefined) | |
| == 2017-06-23 07:58:19,786 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include (previously undefined) | |
| == 2017-06-23 07:58:19,786 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2017-06-23 07:58:19,786 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2017-06-23 07:58:19,786 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,787 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,787 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,787 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,787 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,787 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,787 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,787 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,788 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,788 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,788 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,788 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,788 environment.py:97 INFO Environment variable FFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,788 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 07:58:19,788 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 07:58:19,789 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 07:58:19,789 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 07:58:19,789 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 07:58:19,789 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 07:58:19,789 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 07:58:19,789 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
| == 2017-06-23 07:58:19,789 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
| == 2017-06-23 07:58:19,790 environment.py:97 INFO Environment variable FFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 07:58:19,790 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 07:58:19,790 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 07:58:19,790 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 07:58:19,790 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 07:58:19,790 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 07:58:19,790 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2017-06-23 07:58:19,791 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2017-06-23 07:58:19,791 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,791 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,791 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,791 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,791 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,791 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,792 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,792 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,792 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,792 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,792 environment.py:97 INFO Environment variable LDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -L/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib -L/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib (previously undefined) | |
| == 2017-06-23 07:58:19,792 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -L/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib -L/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib (previously undefined) | |
| == 2017-06-23 07:58:19,792 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,793 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,793 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,793 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,793 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2017-06-23 07:58:19,793 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2017-06-23 07:58:19,793 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2017-06-23 07:58:19,793 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2017-06-23 07:58:19,794 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,794 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,794 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,794 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,794 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,794 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,794 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,795 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,795 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2017-06-23 07:58:19,795 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2017-06-23 07:58:19,795 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,795 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,795 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,795 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,796 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,796 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,796 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,796 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 07:58:19,796 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2017-06-23 07:58:19,796 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2017-06-23 07:58:19,797 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2017-06-23 07:58:19,797 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2017-06-23 07:58:19,797 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2017-06-23 07:58:19,797 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2017-06-23 07:58:19,797 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2017-06-23 07:58:19,797 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2017-06-23 07:58:19,798 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2017-06-23 07:58:19,798 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2017-06-23 07:58:19,798 environment.py:97 INFO Environment variable MPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previously undefined) | |
| == 2017-06-23 07:58:19,798 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previously undefined) | |
| == 2017-06-23 07:58:19,798 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previously undefined) | |
| == 2017-06-23 07:58:19,798 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previously undefined) | |
| == 2017-06-23 07:58:19,798 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previously undefined) | |
| == 2017-06-23 07:58:19,799 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previously undefined) | |
| == 2017-06-23 07:58:19,799 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2017-06-23 07:58:19,799 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2017-06-23 07:58:19,799 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2017-06-23 07:58:19,799 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2017-06-23 07:58:19,799 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2017-06-23 07:58:19,799 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2017-06-23 07:58:19,800 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,800 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,800 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,800 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,800 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,800 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2017-06-23 07:58:19,801 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previously undefined) | |
| == 2017-06-23 07:58:19,801 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previously undefined) | |
| == 2017-06-23 07:58:19,801 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined) | |
| == 2017-06-23 07:58:19,801 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined) | |
| == 2017-06-23 07:58:19,801 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,801 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 07:58:19,802 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,802 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 07:58:19,802 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2017-06-23 07:58:19,802 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2017-06-23 07:58:19,802 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,802 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 07:58:19,802 easyblock.py:1346 INFO Using /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/ as start dir | |
| == 2017-06-23 07:58:19,803 build_log.py:225 INFO configuring... | |
| == 2017-06-23 07:58:19,803 easyblock.py:2301 INFO Starting configure step | |
| == 2017-06-23 07:58:19,803 easyblock.py:2304 INFO Running method configure_step part of step configure | |
| == 2017-06-23 07:58:19,803 environment.py:97 INFO Environment variable FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 07:58:19,804 run.py:162 INFO running cmd: BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK" CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" ./configure --prefix=/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 --with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --enable-prebuilt-html --with-recommended-packages=no --with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no | |
| == 2017-06-23 07:58:38,995 run.py:454 INFO cmd "BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK" CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" ./configure --prefix=/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 --with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --enable-prebuilt-html --with-recommended-packages=no --with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no " exited with exitcode 0 and output: | |
| checking build system type... x86_64-pc-linux-gnu | |
| checking host system type... x86_64-pc-linux-gnu | |
| loading site script './config.site' | |
| loading build-specific script './config.site' | |
| checking for pwd... /usr/bin/pwd | |
| checking whether builddir is srcdir... yes | |
| checking for working aclocal... found | |
| checking for working autoconf... found | |
| checking for working automake... found | |
| checking for working autoheader... found | |
| checking whether ln -s works... yes | |
| checking for bison... no | |
| checking for byacc... no | |
| checking for ar... ar | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking for sed... /usr/bin/sed | |
| checking for which... /usr/bin/which | |
| checking for less... /usr/bin/less | |
| checking for gtar... /usr/bin/gtar | |
| checking for tex... /usr/bin/tex | |
| checking for pdftex... /usr/bin/pdftex | |
| checking for pdflatex... /usr/bin/pdflatex | |
| checking for makeindex... /usr/bin/makeindex | |
| checking for texi2any... no | |
| configure: WARNING: you cannot build info or HTML versions of the R manuals | |
| checking for texi2dvi... no | |
| checking for kpsewhich... /usr/bin/kpsewhich | |
| checking for latex inconsolata package... missing | |
| configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally | |
| checking for unzip... /usr/bin/unzip | |
| checking for zip... /usr/bin/zip | |
| checking for gzip... /usr/bin/gzip | |
| checking for bzip2... /apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/bin/bzip2 | |
| checking for firefox... no | |
| checking for mozilla... no | |
| checking for galeon... no | |
| checking for opera... no | |
| checking for xdg-open... /usr/bin/xdg-open | |
| using default browser ... /usr/bin/xdg-open | |
| checking for acroread... no | |
| checking for acroread4... no | |
| checking for xdg-open... /usr/bin/xdg-open | |
| checking for notangle... false | |
| checking for realpath... /usr/bin/realpath | |
| checking for pkg-config... /usr/bin/pkg-config | |
| checking for gcc... gcc | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether gcc accepts -g... yes | |
| checking for gcc option to accept ISO C89... none needed | |
| checking how to run the C preprocessor... gcc -E | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking whether gcc needs -traditional... no | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking minix/config.h usability... no | |
| checking minix/config.h presence... no | |
| checking for minix/config.h... no | |
| checking whether it is safe to define __EXTENSIONS__... yes | |
| checking how to run the C preprocessor... gcc -E | |
| defining F77 to be gfortran | |
| checking whether we are using the GNU Fortran 77 compiler... yes | |
| checking whether gfortran accepts -g... yes | |
| checking whether we are using the GNU C++ compiler... yes | |
| checking whether g++ accepts -g... yes | |
| checking whether g++ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops can compile C++ code... yes | |
| checking how to run the C++ preprocessor... g++ -E | |
| checking whether __attribute__((visibility())) is supported... yes | |
| checking whether gcc accepts -fvisibility... yes | |
| checking whether gfortran accepts -fvisibility... yes | |
| checking for gcc... gcc | |
| checking whether we are using the GNU Objective C compiler... no | |
| checking whether gcc accepts -g... no | |
| checking for Objective C++ compiler... trying some possibilities | |
| checking whether g++ can compile ObjC++... no | |
| checking whether can compile ObjC++... no | |
| no working ObjC++ compiler found | |
| checking how to print strings... printf | |
| checking for a sed that does not truncate output... (cached) /usr/bin/sed | |
| checking for fgrep... /usr/bin/grep -F | |
| checking for ld used by gcc... /usr/bin/ld | |
| checking if the linker (/usr/bin/ld) is GNU ld... yes | |
| checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B | |
| checking the name lister (/usr/bin/nm -B) interface... BSD nm | |
| checking the maximum length of command line arguments... 1572864 | |
| checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop | |
| checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop | |
| checking for /usr/bin/ld option to reload object files... -r | |
| checking for objdump... objdump | |
| checking how to recognize dependent libraries... pass_all | |
| checking for dlltool... no | |
| checking how to associate runtime and link libraries... printf %s\n | |
| checking for archiver @FILE support... @ | |
| checking for strip... strip | |
| checking for ranlib... ranlib | |
| checking for gawk... gawk | |
| checking command to parse /usr/bin/nm -B output from gcc object... ok | |
| checking for sysroot... no | |
| checking for a working dd... /usr/bin/dd | |
| checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 | |
| checking for mt... no | |
| checking if : is a manifest tool... no | |
| checking for dlfcn.h... yes | |
| checking for objdir... .libs | |
| checking if gcc supports -fno-rtti -fno-exceptions... no | |
| checking for gcc option to produce PIC... -fPIC -DPIC | |
| checking if gcc PIC flag -fPIC -DPIC works... yes | |
| checking if gcc static flag -static works... no | |
| checking if gcc supports -c -o file.o... yes | |
| checking if gcc supports -c -o file.o... (cached) yes | |
| checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes | |
| checking whether -lc should be explicitly linked in... no | |
| checking dynamic linker characteristics... GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking whether stripping libraries is possible... yes | |
| checking if libtool supports shared libraries... yes | |
| checking whether to build shared libraries... yes | |
| checking whether to build static libraries... no | |
| checking how to run the C++ preprocessor... g++ -E | |
| checking for ld used by g++... /usr/bin/ld -m elf_x86_64 | |
| checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes | |
| checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes | |
| checking for g++ option to produce PIC... -fPIC -DPIC | |
| checking if g++ PIC flag -fPIC -DPIC works... yes | |
| checking if g++ static flag -static works... no | |
| checking if g++ supports -c -o file.o... yes | |
| checking if g++ supports -c -o file.o... (cached) yes | |
| checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes | |
| checking dynamic linker characteristics... (cached) GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking if libtool supports shared libraries... yes | |
| checking whether to build shared libraries... yes | |
| checking whether to build static libraries... no | |
| checking for gfortran option to produce PIC... -fPIC | |
| checking if gfortran PIC flag -fPIC works... yes | |
| checking if gfortran static flag -static works... no | |
| checking if gfortran supports -c -o file.o... yes | |
| checking if gfortran supports -c -o file.o... (cached) yes | |
| checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes | |
| checking dynamic linker characteristics... (cached) GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking for cos in -lm... yes | |
| checking for sin in -lm... yes | |
| checking for dlopen in -ldl... yes | |
| checking readline/history.h usability... yes | |
| checking readline/history.h presence... yes | |
| checking for readline/history.h... yes | |
| checking readline/readline.h usability... yes | |
| checking readline/readline.h presence... yes | |
| checking for readline/readline.h... yes | |
| checking for rl_callback_read_char in -lreadline... yes | |
| checking for history_truncate_file... yes | |
| checking whether rl_callback_sigcleanup exists and is declared... no | |
| checking whether rl_completion_matches exists and is declared... yes | |
| checking whether rl_resize_terminal exists and is declared... yes | |
| checking whether rl_sort_completion_matches exists and is declared... yes | |
| checking for ANSI C header files... (cached) yes | |
| checking for dirent.h that defines DIR... yes | |
| checking for library containing opendir... none required | |
| checking for sys/wait.h that is POSIX.1 compatible... yes | |
| checking for dlfcn.h... (cached) yes | |
| checking fcntl.h usability... yes | |
| checking fcntl.h presence... yes | |
| checking for fcntl.h... yes | |
| checking glob.h usability... yes | |
| checking glob.h presence... yes | |
| checking for glob.h... yes | |
| checking grp.h usability... yes | |
| checking grp.h presence... yes | |
| checking for grp.h... yes | |
| checking pwd.h usability... yes | |
| checking pwd.h presence... yes | |
| checking for pwd.h... yes | |
| checking sched.h usability... yes | |
| checking sched.h presence... yes | |
| checking for sched.h... yes | |
| checking for strings.h... (cached) yes | |
| checking sys/resource.h usability... yes | |
| checking sys/resource.h presence... yes | |
| checking for sys/resource.h... yes | |
| checking sys/select.h usability... yes | |
| checking sys/select.h presence... yes | |
| checking for sys/select.h... yes | |
| checking sys/socket.h usability... yes | |
| checking sys/socket.h presence... yes | |
| checking for sys/socket.h... yes | |
| checking for sys/stat.h... (cached) yes | |
| checking sys/time.h usability... yes | |
| checking sys/time.h presence... yes | |
| checking for sys/time.h... yes | |
| checking sys/times.h usability... yes | |
| checking sys/times.h presence... yes | |
| checking for sys/times.h... yes | |
| checking sys/utsname.h usability... yes | |
| checking sys/utsname.h presence... yes | |
| checking for sys/utsname.h... yes | |
| checking for unistd.h... (cached) yes | |
| checking utime.h usability... yes | |
| checking utime.h presence... yes | |
| checking for utime.h... yes | |
| checking arpa/inet.h usability... yes | |
| checking arpa/inet.h presence... yes | |
| checking for arpa/inet.h... yes | |
| checking dl.h usability... no | |
| checking dl.h presence... no | |
| checking for dl.h... no | |
| checking elf.h usability... yes | |
| checking elf.h presence... yes | |
| checking for elf.h... yes | |
| checking features.h usability... yes | |
| checking features.h presence... yes | |
| checking for features.h... yes | |
| checking floatingpoint.h usability... no | |
| checking floatingpoint.h presence... no | |
| checking for floatingpoint.h... no | |
| checking langinfo.h usability... yes | |
| checking langinfo.h presence... yes | |
| checking for langinfo.h... yes | |
| checking netdb.h usability... yes | |
| checking netdb.h presence... yes | |
| checking for netdb.h... yes | |
| checking netinet/in.h usability... yes | |
| checking netinet/in.h presence... yes | |
| checking for netinet/in.h... yes | |
| checking sys/param.h usability... yes | |
| checking sys/param.h presence... yes | |
| checking for sys/param.h... yes | |
| checking stdalign.h usability... yes | |
| checking stdalign.h presence... yes | |
| checking for stdalign.h... yes | |
| checking errno.h usability... yes | |
| checking errno.h presence... yes | |
| checking for errno.h... yes | |
| checking for inttypes.h... (cached) yes | |
| checking limits.h usability... yes | |
| checking limits.h presence... yes | |
| checking for limits.h... yes | |
| checking locale.h usability... yes | |
| checking locale.h presence... yes | |
| checking for locale.h... yes | |
| checking stdarg.h usability... yes | |
| checking stdarg.h presence... yes | |
| checking for stdarg.h... yes | |
| checking stdbool.h usability... yes | |
| checking stdbool.h presence... yes | |
| checking for stdbool.h... yes | |
| checking for stdint.h... (cached) yes | |
| checking for string.h... (cached) yes | |
| checking whether setjmp.h is POSIX.1 compatible... yes | |
| checking whether sigsetjmp is declared... yes | |
| checking whether siglongjmp is declared... yes | |
| checking for GNU C library with version >= 2... yes | |
| checking return type of signal handlers... void | |
| checking for uint64_t... yes | |
| checking for int64_t... yes | |
| checking for int_fast64_t... yes | |
| checking for pid_t... yes | |
| checking for size_t... yes | |
| checking whether SIZE_MAX is declared... yes | |
| checking for blkcnt_t... yes | |
| checking for type of socket length... socklen_t * | |
| checking for stack_t... yes | |
| checking for intptr_t... yes | |
| checking for uintptr_t... yes | |
| checking whether byte ordering is bigendian... no | |
| checking for an ANSI C-conforming const... yes | |
| checking for gcc option to accept ISO C99... -std=gnu99 | |
| checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 | |
| checking for inline... inline | |
| checking size of int... 4 | |
| checking size of long... 8 | |
| checking size of long long... 8 | |
| checking size of double... 8 | |
| checking size of size_t... 8 | |
| checking size of long double... 16 | |
| checking whether we can compute C Make dependencies... yes, using $(CC) -MM | |
| checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes | |
| checking for gcc -std=gnu99 option to support OpenMP... -fopenmp | |
| checking for dummy main to link with Fortran 77 libraries... none | |
| checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore | |
| checking whether gfortran appends underscores to external names... yes | |
| checking whether gfortran appends extra underscores to external names... no | |
| checking whether mixed C/Fortran code can be run... yes | |
| checking whether gfortran and gcc -std=gnu99 agree on int and double... yes | |
| checking whether gfortran and gcc -std=gnu99 agree on double complex... yes | |
| checking for gfortran option to support OpenMP... -fopenmp | |
| checking whether g++ accepts -M for generating dependencies... yes | |
| checking for g++ option to support OpenMP... -fopenmp | |
| checking whether we can compute ObjC Make dependencies... no | |
| checking whether C runtime needs -D__NO_MATH_INLINES... no | |
| checking for xmkmf... no | |
| checking whether g++ supports C++98 features by default... yes | |
| checking whether g++ supports C++11 features by default... no | |
| checking whether g++ supports C++11 features with -std=gnu++11... yes | |
| checking whether g++ supports C++14 features by default... no | |
| checking whether g++ supports C++14 features with -std=gnu++14... no | |
| checking whether g++ supports C++14 features with -std=gnu++1y... no | |
| checking whether g++ supports C++14 features with -std=c++14... no | |
| checking whether g++ supports C++14 features with -std=c++1y... no | |
| configure: No compiler with C++14 support was found | |
| checking whether supports C++17 features by default... no | |
| checking whether supports C++17 features with -std=gnu++17... no | |
| checking whether supports C++17 features with -std=gnu++1z... no | |
| checking whether supports C++17 features with -std=c++17... no | |
| checking whether supports C++17 features with -std=c++1z... no | |
| configure: No compiler with C++17 support was found | |
| checking for off_t... yes | |
| checking for working alloca.h... yes | |
| checking for alloca... yes | |
| checking whether alloca is declared... yes | |
| checking whether expm1 exists and is declared... yes | |
| checking whether hypot exists and is declared... yes | |
| checking whether log1p exists and is declared... yes | |
| checking whether log1pl exists and is declared... yes | |
| checking whether log2 exists and is declared... yes | |
| checking whether log10 exists and is declared... yes | |
| checking whether nearbyint exists and is declared... yes | |
| checking whether nearbyintl exists and is declared... yes | |
| checking whether powl exists and is declared... yes | |
| checking whether rint exists and is declared... yes | |
| checking whether rintl exists and is declared... yes | |
| checking whether va_copy exists and is declared... yes | |
| checking for isblank... yes | |
| checking sunmath.h usability... no | |
| checking sunmath.h presence... no | |
| checking for sunmath.h... no | |
| checking for cospi in -lsunmath... no | |
| checking for atanpi... no | |
| checking for atan2pi... no | |
| checking for cospi... no | |
| checking for exp10... yes | |
| checking for pown... no | |
| checking for sinpi... no | |
| checking for tanpi... no | |
| checking for __cospi... no | |
| checking for __sinpi... no | |
| checking for __tanpi... no | |
| checking for fseeko... yes | |
| checking for ftello... yes | |
| checking for matherr... yes | |
| checking whether fcntl exists and is declared... yes | |
| checking whether getgrgid exists and is declared... yes | |
| checking whether getpwuid exists and is declared... yes | |
| checking whether kill exists and is declared... yes | |
| checking whether sigaction exists and is declared... yes | |
| checking whether sigaltstack exists and is declared... yes | |
| checking whether sigemptyset exists and is declared... yes | |
| checking whether fdopen exists and is declared... yes | |
| checking whether popen exists and is declared... yes | |
| checking whether getline exists and is declared... yes | |
| checking whether select exists and is declared... yes | |
| checking whether setenv exists and is declared... yes | |
| checking whether unsetenv exists and is declared... yes | |
| checking whether getrlimit exists and is declared... yes | |
| checking whether getrusage exists and is declared... yes | |
| checking whether getpriority exists and is declared... yes | |
| checking whether chmod exists and is declared... yes | |
| checking whether mkfifo exists and is declared... yes | |
| checking whether stat exists and is declared... yes | |
| checking whether umask exists and is declared... yes | |
| checking whether gettimeofday exists and is declared... yes | |
| checking whether utimes exists and is declared... yes | |
| checking whether times exists and is declared... yes | |
| checking whether gmtime_r exists and is declared... yes | |
| checking whether localtime_r exists and is declared... yes | |
| checking whether nl_langinfo exists and is declared... yes | |
| checking whether access exists and is declared... yes | |
| checking whether chdir exists and is declared... yes | |
| checking whether execv exists and is declared... yes | |
| checking whether ftruncate exists and is declared... yes | |
| checking whether getcwd exists and is declared... yes | |
| checking whether geteuid exists and is declared... yes | |
| checking whether getuid exists and is declared... yes | |
| checking whether link exists and is declared... yes | |
| checking whether readlink exists and is declared... yes | |
| checking whether symlink exists and is declared... yes | |
| checking whether sysconf exists and is declared... yes | |
| checking whether sched_setaffinity exists and is declared... yes | |
| checking whether sched_getaffinity exists and is declared... yes | |
| checking whether utime exists and is declared... yes | |
| checking whether utimensat exists and is declared... yes | |
| checking for clock_gettime in -lrt... yes | |
| checking whether clock_gettime exists and is declared... yes | |
| checking whether timespec_get exists and is declared... yes | |
| checking for putenv... yes | |
| checking whether putenv is declared... yes | |
| checking for vasprintf... yes | |
| checking whether vasprintf is declared... yes | |
| checking for mempcpy... yes | |
| checking for realpath... yes | |
| checking whether realpath is declared... yes | |
| checking whether glob exists and is declared... yes | |
| checking for dladdr... yes | |
| checking for dlsym... yes | |
| checking whether dladdr is declared... yes | |
| checking whether dlsym is declared... yes | |
| checking whether RTLD_DEFAULT is declared... yes | |
| checking whether RTLD_NEXT is declared... yes | |
| checking for isnan... yes | |
| checking whether isfinite is declared... yes | |
| checking whether isnan is declared... yes | |
| checking whether you have IEEE 754 floating-point arithmetic... yes | |
| checking whether putenv("FOO") can unset an environment variable... yes | |
| checking whether putenv("FOO=") can unset an environment variable... no | |
| checking for nl_langinfo and CODESET... yes | |
| checking for mkdtemp... yes | |
| checking for strdup... yes | |
| checking for strncasecmp... yes | |
| checking whether mkdtemp is declared... yes | |
| checking whether strdup is declared... yes | |
| checking whether strncasecmp is declared... yes | |
| checking for library containing connect... none required | |
| checking for library containing gethostbyname... none required | |
| checking for library containing xdr_string... none required | |
| checking for working calloc... yes | |
| checking for working isfinite... yes | |
| checking for working log1p... yes | |
| checking whether ftell works correctly on files opened for append... yes | |
| checking for working sigaction... yes | |
| checking whether mktime sets errno... no | |
| checking whether mktime works correctly outside 1902-2037... yes | |
| checking complex.h usability... yes | |
| checking complex.h presence... yes | |
| checking for complex.h... yes | |
| checking for double complex... yes | |
| checking whether C99 double complex is supported... yes | |
| checking whether cabs exists and is declared... yes | |
| checking whether carg exists and is declared... yes | |
| checking whether cexp exists and is declared... yes | |
| checking whether clog exists and is declared... yes | |
| checking whether csqrt exists and is declared... yes | |
| checking whether cpow exists and is declared... yes | |
| checking whether ccos exists and is declared... yes | |
| checking whether csin exists and is declared... yes | |
| checking whether ctan exists and is declared... yes | |
| checking whether cacos exists and is declared... yes | |
| checking whether casin exists and is declared... yes | |
| checking whether catan exists and is declared... yes | |
| checking whether ccosh exists and is declared... yes | |
| checking whether csinh exists and is declared... yes | |
| checking whether ctanh exists and is declared... yes | |
| checking whether 'struct tm' includes tm_zone... yes | |
| checking whether 'struct tm' includes tm_gmtoff... yes | |
| checking for dgemm_ in -lopenblas -lgfortran... yes | |
| checking whether double complex BLAS can be used... yes | |
| checking whether the BLAS is complete... yes | |
| checking for dpstrf_... yes | |
| checking iconv.h usability... yes | |
| checking iconv.h presence... yes | |
| checking for iconv.h... yes | |
| checking for iconv... yes | |
| checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes | |
| checking for iconvlist... no | |
| checking for iconv... yes | |
| checking for iconv declaration... | |
| extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
| checking wchar.h usability... yes | |
| checking wchar.h presence... yes | |
| checking for wchar.h... yes | |
| checking wctype.h usability... yes | |
| checking wctype.h presence... yes | |
| checking for wctype.h... yes | |
| checking whether mbrtowc exists and is declared... yes | |
| checking whether wcrtomb exists and is declared... yes | |
| checking whether wcscoll exists and is declared... yes | |
| checking whether wcsftime exists and is declared... yes | |
| checking whether wcstod exists and is declared... yes | |
| checking whether mbstowcs exists and is declared... yes | |
| checking whether wcstombs exists and is declared... yes | |
| checking whether wctrans exists and is declared... yes | |
| checking whether iswblank exists and is declared... yes | |
| checking whether wctype exists and is declared... yes | |
| checking whether iswctype exists and is declared... yes | |
| checking for wctrans_t... yes | |
| checking for mbstate_t... yes | |
| checking for ICU... no | |
| checking for X... disabled | |
| using X11 ... no | |
| checking for BSD networking... yes | |
| checking rpc/types.h usability... yes | |
| checking rpc/types.h presence... yes | |
| checking for rpc/types.h... yes | |
| checking for rpc/xdr.h... yes | |
| checking for XDR support... yes | |
| checking for inflateInit2_ in -lz... yes | |
| checking zlib.h usability... yes | |
| checking zlib.h presence... yes | |
| checking for zlib.h... yes | |
| checking if zlib version >= 1.2.5... yes | |
| checking whether zlib support suffices... yes | |
| checking mmap support for zlib... yes | |
| checking for BZ2_bzlibVersion in -lbz2... yes | |
| checking bzlib.h usability... yes | |
| checking bzlib.h presence... yes | |
| checking for bzlib.h... yes | |
| checking if bzip2 version >= 1.0.6... yes | |
| checking whether bzip2 support suffices... yes | |
| checking for lzma_version_number in -llzma... yes | |
| checking lzma.h usability... yes | |
| checking lzma.h presence... yes | |
| checking for lzma.h... yes | |
| checking if lzma version >= 5.0.3... yes | |
| checking for pcre_fullinfo in -lpcre... yes | |
| checking pcre.h usability... yes | |
| checking pcre.h presence... yes | |
| checking for pcre.h... yes | |
| checking pcre/pcre.h usability... no | |
| checking pcre/pcre.h presence... no | |
| checking for pcre/pcre.h... no | |
| checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes | |
| checking if PCRE version >= 8.32... yes | |
| checking whether PCRE support suffices... yes | |
| checking for curl-config... /apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/bin/curl-config | |
| checking libcurl version ... 7.40.0 | |
| checking curl/curl.h usability... yes | |
| checking curl/curl.h presence... yes | |
| checking for curl/curl.h... yes | |
| checking if libcurl is version 7 and >= 7.22.0... yes | |
| checking if libcurl supports https... yes | |
| checking whether leap seconds are treated according to POSIX... yes | |
| checking for inline... inline | |
| checking for sys/time.h... (cached) yes | |
| checking for stdlib.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for sys/param.h... (cached) yes | |
| checking for struct stat.st_atim.tv_nsec... yes | |
| checking whether struct stat.st_atim is of type struct timespec... yes | |
| checking for setitimer... yes | |
| checking for special C compiler options needed for large files... no | |
| checking for _FILE_OFFSET_BITS value needed for large files... no | |
| checking for _LARGEFILE_SOURCE value needed for large files... no | |
| checking whether KERN_USRSTACK sysctl is supported... no | |
| checking for visible __lib_stack_end... yes | |
| checking for lpr... lpr | |
| checking for paperconf... false | |
| checking whether we are using the GNU Fortran compiler... yes | |
| checking whether gfortran accepts -g... yes | |
| checking if libtool supports shared libraries... yes | |
| checking whether to build shared libraries... yes | |
| checking whether to build static libraries... no | |
| checking for gfortran option to produce PIC... -fPIC | |
| checking if gfortran PIC flag -fPIC works... yes | |
| checking if gfortran static flag -static works... no | |
| checking if gfortran supports -c -o file.o... yes | |
| checking if gfortran supports -c -o file.o... (cached) yes | |
| checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes | |
| checking dynamic linker characteristics... (cached) GNU/Linux ld.so | |
| checking how to hardcode library paths into programs... immediate | |
| checking for Fortran flag to compile .f90 files... none | |
| checking for Fortran flag to compile .f95 files... none | |
| checking for gfortran option to support OpenMP... -fopenmp | |
| checking whether NLS is requested... yes | |
| Configuring src/extra/intl directory | |
| checking for a thread-safe mkdir -p... /usr/bin/mkdir -p | |
| checking whether we are using the GNU C Library 2 or newer... yes | |
| checking for ranlib... (cached) ranlib | |
| checking for simple visibility declarations... yes | |
| checking for stdint.h... yes | |
| checking for getpagesize... yes | |
| checking for working mmap... yes | |
| checking whether integer division by zero raises SIGFPE... yes | |
| checking for inttypes.h... yes | |
| checking for unsigned long long int... yes | |
| checking for inttypes.h... (cached) yes | |
| checking whether the inttypes.h PRIxNN macros are broken... no | |
| checking for ld used by gcc -std=gnu99... /usr/bin/ld -m elf_x86_64 | |
| checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes | |
| checking for shared library run path origin... done | |
| checking whether imported symbols can be declared weak... yes | |
| checking pthread.h usability... yes | |
| checking pthread.h presence... yes | |
| checking for pthread.h... yes | |
| checking for pthread_kill in -lpthread... yes | |
| checking for pthread_rwlock_t... yes | |
| checking for multithread API to use... posix | |
| checking argz.h usability... yes | |
| checking argz.h presence... yes | |
| checking for argz.h... yes | |
| checking for inttypes.h... (cached) yes | |
| checking for limits.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for sys/param.h... (cached) yes | |
| checking for getcwd... yes | |
| checking for getegid... yes | |
| checking for geteuid... yes | |
| checking for getgid... yes | |
| checking for getuid... yes | |
| checking for mempcpy... (cached) yes | |
| checking for munmap... yes | |
| checking for stpcpy... yes | |
| checking for strcasecmp... yes | |
| checking for strdup... (cached) yes | |
| checking for strtoul... yes | |
| checking for tsearch... yes | |
| checking for argz_count... yes | |
| checking for argz_stringify... yes | |
| checking for argz_next... yes | |
| checking for __fsetlocking... yes | |
| checking whether feof_unlocked is declared... yes | |
| checking whether fgets_unlocked is declared... yes | |
| checking for iconv... (cached) yes | |
| checking for iconv declaration... (cached) | |
| extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
| checking for NL_LOCALE_NAME macro... yes | |
| checking for bison... no | |
| checking for long long int... yes | |
| checking for long double... yes | |
| checking for wchar_t... yes | |
| checking for wint_t... yes | |
| checking for intmax_t... yes | |
| checking whether printf() supports POSIX/XSI format strings... yes | |
| checking whether we are using the GNU C Library 2.1 or newer... yes | |
| checking for stdint.h... (cached) yes | |
| checking for SIZE_MAX... yes | |
| checking for stdint.h... (cached) yes | |
| checking for CFPreferencesCopyAppValue... no | |
| checking for CFLocaleCopyCurrent... no | |
| checking for ptrdiff_t... yes | |
| checking stddef.h usability... yes | |
| checking stddef.h presence... yes | |
| checking for stddef.h... yes | |
| checking for stdlib.h... (cached) yes | |
| checking for string.h... (cached) yes | |
| checking for asprintf... yes | |
| checking for fwprintf... yes | |
| checking for putenv... (cached) yes | |
| checking for setenv... yes | |
| checking for setlocale... yes | |
| checking for snprintf... yes | |
| checking for wcslen... yes | |
| checking whether _snprintf is declared... no | |
| checking whether _snwprintf is declared... no | |
| checking whether getc_unlocked is declared... yes | |
| checking for nl_langinfo and CODESET... (cached) yes | |
| checking for LC_MESSAGES... yes | |
| checking for CFPreferencesCopyAppValue... (cached) no | |
| checking for CFLocaleCopyCurrent... (cached) no | |
| checking whether included gettext is requested... no | |
| checking for GNU gettext in libc... yes | |
| checking whether to use NLS... yes | |
| checking where the gettext function comes from... libc | |
| Finished configuring src/extra/intl directory | |
| checking whether OpenMP SIMD reduction is supported... yes | |
| using as R_SHELL for scripts ... /bin/sh | |
| configure: creating ./config.status | |
| config.status: creating Makeconf | |
| config.status: creating Makefile | |
| config.status: creating doc/Makefile | |
| config.status: creating doc/html/Makefile | |
| config.status: creating doc/manual/Makefile | |
| config.status: creating etc/Makefile | |
| config.status: creating etc/Makeconf | |
| config.status: creating etc/Renviron | |
| config.status: creating etc/javaconf | |
| config.status: creating etc/ldpaths | |
| config.status: creating m4/Makefile | |
| config.status: creating po/Makefile | |
| config.status: creating share/Makefile | |
| config.status: creating src/Makefile | |
| config.status: creating src/appl/Makefile | |
| config.status: creating src/extra/Makefile | |
| config.status: creating src/extra/blas/Makefile | |
| config.status: creating src/extra/intl/Makefile | |
| config.status: creating src/extra/tre/Makefile | |
| config.status: creating src/extra/tzone/Makefile | |
| config.status: creating src/extra/xdr/Makefile | |
| config.status: creating src/include/Makefile | |
| config.status: creating src/include/Rmath.h0 | |
| config.status: creating src/include/R_ext/Makefile | |
| config.status: creating src/library/Recommended/Makefile | |
| config.status: creating src/library/Makefile | |
| config.status: creating src/library/base/DESCRIPTION | |
| config.status: creating src/library/base/Makefile | |
| config.status: creating src/library/compiler/DESCRIPTION | |
| config.status: creating src/library/compiler/Makefile | |
| config.status: creating src/library/datasets/DESCRIPTION | |
| config.status: creating src/library/datasets/Makefile | |
| config.status: creating src/library/graphics/DESCRIPTION | |
| config.status: creating src/library/graphics/Makefile | |
| config.status: creating src/library/graphics/src/Makefile | |
| config.status: creating src/library/grDevices/DESCRIPTION | |
| config.status: creating src/library/grDevices/Makefile | |
| config.status: creating src/library/grDevices/src/Makefile | |
| config.status: creating src/library/grDevices/src/cairo/Makefile | |
| config.status: creating src/library/grid/DESCRIPTION | |
| config.status: creating src/library/grid/Makefile | |
| config.status: creating src/library/grid/src/Makefile | |
| config.status: creating src/library/methods/DESCRIPTION | |
| config.status: creating src/library/methods/Makefile | |
| config.status: creating src/library/methods/src/Makefile | |
| config.status: creating src/library/parallel/DESCRIPTION | |
| config.status: creating src/library/parallel/Makefile | |
| config.status: creating src/library/parallel/src/Makefile | |
| config.status: creating src/library/profile/Makefile | |
| config.status: creating src/library/stats/DESCRIPTION | |
| config.status: creating src/library/stats/Makefile | |
| config.status: creating src/library/stats/src/Makefile | |
| config.status: creating src/library/stats4/DESCRIPTION | |
| config.status: creating src/library/stats4/Makefile | |
| config.status: creating src/library/splines/DESCRIPTION | |
| config.status: creating src/library/splines/Makefile | |
| config.status: creating src/library/splines/src/Makefile | |
| config.status: creating src/library/tcltk/DESCRIPTION | |
| config.status: creating src/library/tcltk/Makefile | |
| config.status: creating src/library/tcltk/src/Makefile | |
| config.status: creating src/library/tools/DESCRIPTION | |
| config.status: creating src/library/tools/Makefile | |
| config.status: creating src/library/tools/src/Makefile | |
| config.status: creating src/library/translations/DESCRIPTION | |
| config.status: creating src/library/translations/Makefile | |
| config.status: creating src/library/utils/DESCRIPTION | |
| config.status: creating src/library/utils/Makefile | |
| config.status: creating src/library/utils/src/Makefile | |
| config.status: creating src/main/Makefile | |
| config.status: creating src/modules/Makefile | |
| config.status: creating src/modules/X11/Makefile | |
| config.status: creating src/modules/internet/Makefile | |
| config.status: creating src/modules/lapack/Makefile | |
| config.status: creating src/nmath/Makefile | |
| config.status: creating src/nmath/standalone/Makefile | |
| config.status: creating src/scripts/Makefile | |
| config.status: creating src/scripts/R.sh | |
| config.status: creating src/scripts/Rcmd | |
| config.status: creating src/scripts/f77_f2c | |
| config.status: creating src/scripts/javareconf | |
| config.status: creating src/scripts/mkinstalldirs | |
| config.status: creating src/scripts/pager | |
| config.status: creating src/scripts/rtags | |
| config.status: creating src/unix/Makefile | |
| config.status: creating tests/Makefile | |
| config.status: creating tests/Embedding/Makefile | |
| config.status: creating tests/Examples/Makefile | |
| config.status: creating tools/Makefile | |
| config.status: creating src/include/config.h | |
| config.status: executing libtool commands | |
| config.status: executing stamp-h commands | |
| R is now configured for x86_64-pc-linux-gnu | |
| Source directory: . | |
| Installation directory: /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 | |
| C compiler: gcc -std=gnu99 -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include | |
| Fortran 77 compiler: gfortran -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops | |
| Default C++ compiler: g++ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops | |
| C++98 compiler: g++ -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops | |
| C++11 compiler: g++ -std=gnu++11 -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops | |
| C++14 compiler: | |
| C++17 compiler: | |
| Fortran 90/95 compiler: gfortran -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops | |
| Obj-C compiler: | |
| Interfaces supported: | |
| External libraries: readline, BLAS(OpenBLAS), LAPACK(generic), curl | |
| Additional capabilities: NLS | |
| Options enabled: shared R library, R profiling, static HTML | |
| Capabilities skipped: PNG, JPEG, TIFF, cairo, ICU | |
| Options not enabled: shared BLAS, memory profiling | |
| Recommended packages: no | |
| configure: WARNING: you cannot build info or HTML versions of the R manuals | |
| configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally | |
| == 2017-06-23 07:58:38,999 build_log.py:225 INFO building... | |
| == 2017-06-23 07:58:38,999 easyblock.py:2301 INFO Starting build step | |
| == 2017-06-23 07:58:38,999 easyblock.py:2304 INFO Running method build_step part of step build | |
| == 2017-06-23 07:58:38,999 run.py:162 INFO running cmd: make -j 2 | |
| == 2017-06-23 08:02:37,544 run.py:454 INFO cmd " make -j 2 " exited with exitcode 0 and output: | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/m4' | |
| make[1]: Nothing to be done for `R'. | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/m4' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tools' | |
| make[1]: Nothing to be done for `R'. | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tools' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/html' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/html' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/manual' | |
| make[2]: Nothing to be done for `R'. | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/manual' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/etc' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/etc' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/share' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/share' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/scripts' | |
| creating src/scripts/R.fe | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/scripts' | |
| mkdir -p -- ../../bin | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/scripts' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/scripts' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include' | |
| mkdir -p -- ../../include | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include/R_ext' | |
| mkdir -p -- ../../../include/R_ext | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include/R_ext' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| making regcomp.d from regcomp.c | |
| making regerror.d from regerror.c | |
| making regexec.d from regexec.c | |
| making tre-ast.d from tre-ast.c | |
| making tre-compile.d from tre-compile.c | |
| making tre-match-approx.d from tre-match-approx.c | |
| making tre-match-backtrack.d from tre-match-backtrack.c | |
| making tre-match-parallel.d from tre-match-parallel.c | |
| making tre-mem.d from tre-mem.c | |
| making tre-parse.d from tre-parse.c | |
| making tre-stack.d from tre-stack.c | |
| making xmalloc.d from xmalloc.c | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c regcomp.c -o regcomp.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c regerror.c -o regerror.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c regexec.c -o regexec.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-ast.c -o tre-ast.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-compile.c -o tre-compile.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-mem.c -o tre-mem.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-parse.c -o tre-parse.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c tre-stack.c -o tre-stack.o | |
| gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c xmalloc.c -o xmalloc.o | |
| ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o | |
| ranlib libtre.a | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/appl' | |
| making integrate.d from integrate.c | |
| making interv.d from interv.c | |
| making maxcol.d from maxcol.c | |
| making optim.d from optim.c | |
| making pretty.d from pretty.c | |
| making uncmin.d from uncmin.c | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/appl' | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c integrate.c -o integrate.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c interv.c -o interv.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c maxcol.c -o maxcol.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c optim.c -o optim.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pretty.c -o pretty.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c uncmin.c -o uncmin.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dchdc.f -o dchdc.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dpbfa.f -o dpbfa.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dpbsl.f -o dpbsl.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dpoco.f -o dpoco.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dpodi.f -o dpodi.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dpofa.f -o dpofa.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dposl.f -o dposl.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dqrdc.f -o dqrdc.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dqrdc2.f -o dqrdc2.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dqrls.f -o dqrls.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dqrsl.f -o dqrsl.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dqrutl.f -o dqrutl.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dsvdc.f -o dsvdc.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dtrco.f -o dtrco.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c dtrsl.f -o dtrsl.o | |
| ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o | |
| ranlib libappl.a | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/appl' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/appl' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/nmath' | |
| making mlutils.d from mlutils.c | |
| making d1mach.d from d1mach.c | |
| making i1mach.d from i1mach.c | |
| making fmax2.d from fmax2.c | |
| making fmin2.d from fmin2.c | |
| making fprec.d from fprec.c | |
| making fround.d from fround.c | |
| making ftrunc.d from ftrunc.c | |
| making sign.d from sign.c | |
| making fsign.d from fsign.c | |
| making imax2.d from imax2.c | |
| making imin2.d from imin2.c | |
| making chebyshev.d from chebyshev.c | |
| making log1p.d from log1p.c | |
| making expm1.d from expm1.c | |
| making lgammacor.d from lgammacor.c | |
| making gammalims.d from gammalims.c | |
| making stirlerr.d from stirlerr.c | |
| making bd0.d from bd0.c | |
| making gamma.d from gamma.c | |
| making lgamma.d from lgamma.c | |
| making gamma_cody.d from gamma_cody.c | |
| making beta.d from beta.c | |
| making lbeta.d from lbeta.c | |
| making polygamma.d from polygamma.c | |
| making cospi.d from cospi.c | |
| making bessel_i.d from bessel_i.c | |
| making bessel_j.d from bessel_j.c | |
| making bessel_k.d from bessel_k.c | |
| making bessel_y.d from bessel_y.c | |
| making choose.d from choose.c | |
| making snorm.d from snorm.c | |
| making sexp.d from sexp.c | |
| making dgamma.d from dgamma.c | |
| making pgamma.d from pgamma.c | |
| making qgamma.d from qgamma.c | |
| making rgamma.d from rgamma.c | |
| making dbeta.d from dbeta.c | |
| making pbeta.d from pbeta.c | |
| making qbeta.d from qbeta.c | |
| making rbeta.d from rbeta.c | |
| making dunif.d from dunif.c | |
| making punif.d from punif.c | |
| making qunif.d from qunif.c | |
| making runif.d from runif.c | |
| making dnorm.d from dnorm.c | |
| making pnorm.d from pnorm.c | |
| making qnorm.d from qnorm.c | |
| making rnorm.d from rnorm.c | |
| making dlnorm.d from dlnorm.c | |
| making plnorm.d from plnorm.c | |
| making qlnorm.d from qlnorm.c | |
| making rlnorm.d from rlnorm.c | |
| making df.d from df.c | |
| making pf.d from pf.c | |
| making qf.d from qf.c | |
| making rf.d from rf.c | |
| making dnf.d from dnf.c | |
| making dt.d from dt.c | |
| making pt.d from pt.c | |
| making qt.d from qt.c | |
| making rt.d from rt.c | |
| making dnt.d from dnt.c | |
| making dchisq.d from dchisq.c | |
| making pchisq.d from pchisq.c | |
| making qchisq.d from qchisq.c | |
| making rchisq.d from rchisq.c | |
| making rnchisq.d from rnchisq.c | |
| making dbinom.d from dbinom.c | |
| making pbinom.d from pbinom.c | |
| making qbinom.d from qbinom.c | |
| making rbinom.d from rbinom.c | |
| making rmultinom.d from rmultinom.c | |
| making dcauchy.d from dcauchy.c | |
| making pcauchy.d from pcauchy.c | |
| making qcauchy.d from qcauchy.c | |
| making rcauchy.d from rcauchy.c | |
| making dexp.d from dexp.c | |
| making pexp.d from pexp.c | |
| making qexp.d from qexp.c | |
| making rexp.d from rexp.c | |
| making dgeom.d from dgeom.c | |
| making pgeom.d from pgeom.c | |
| making qgeom.d from qgeom.c | |
| making rgeom.d from rgeom.c | |
| making dhyper.d from dhyper.c | |
| making phyper.d from phyper.c | |
| making qhyper.d from qhyper.c | |
| making rhyper.d from rhyper.c | |
| making dnbinom.d from dnbinom.c | |
| making pnbinom.d from pnbinom.c | |
| making qnbinom.d from qnbinom.c | |
| making rnbinom.d from rnbinom.c | |
| making dpois.d from dpois.c | |
| making ppois.d from ppois.c | |
| making qpois.d from qpois.c | |
| making rpois.d from rpois.c | |
| making dweibull.d from dweibull.c | |
| making pweibull.d from pweibull.c | |
| making qweibull.d from qweibull.c | |
| making rweibull.d from rweibull.c | |
| making dlogis.d from dlogis.c | |
| making plogis.d from plogis.c | |
| making qlogis.d from qlogis.c | |
| making rlogis.d from rlogis.c | |
| making dnchisq.d from dnchisq.c | |
| making pnchisq.d from pnchisq.c | |
| making qnchisq.d from qnchisq.c | |
| making dnbeta.d from dnbeta.c | |
| making pnbeta.d from pnbeta.c | |
| making qnbeta.d from qnbeta.c | |
| making pnf.d from pnf.c | |
| making pnt.d from pnt.c | |
| making qnf.d from qnf.c | |
| making qnt.d from qnt.c | |
| making ptukey.d from ptukey.c | |
| making qtukey.d from qtukey.c | |
| making toms708.d from toms708.c | |
| making wilcox.d from wilcox.c | |
| making signrank.d from signrank.c | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/nmath' | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c mlutils.c -o mlutils.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c d1mach.c -o d1mach.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c i1mach.c -o i1mach.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fmax2.c -o fmax2.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fmin2.c -o fmin2.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fprec.c -o fprec.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fround.c -o fround.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c ftrunc.c -o ftrunc.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sign.c -o sign.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fsign.c -o fsign.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c imax2.c -o imax2.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c imin2.c -o imin2.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c chebyshev.c -o chebyshev.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c log1p.c -o log1p.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c expm1.c -o expm1.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c lgammacor.c -o lgammacor.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gammalims.c -o gammalims.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c stirlerr.c -o stirlerr.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c bd0.c -o bd0.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gamma.c -o gamma.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c lgamma.c -o lgamma.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gamma_cody.c -o gamma_cody.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c beta.c -o beta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c lbeta.c -o lbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c polygamma.c -o polygamma.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c cospi.c -o cospi.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c bessel_i.c -o bessel_i.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c bessel_j.c -o bessel_j.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c bessel_k.c -o bessel_k.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c bessel_y.c -o bessel_y.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c choose.c -o choose.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c snorm.c -o snorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sexp.c -o sexp.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dgamma.c -o dgamma.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pgamma.c -o pgamma.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qgamma.c -o qgamma.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rgamma.c -o rgamma.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dbeta.c -o dbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pbeta.c -o pbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qbeta.c -o qbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rbeta.c -o rbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dunif.c -o dunif.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c punif.c -o punif.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qunif.c -o qunif.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c runif.c -o runif.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dnorm.c -o dnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pnorm.c -o pnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qnorm.c -o qnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rnorm.c -o rnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dlnorm.c -o dlnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c plnorm.c -o plnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qlnorm.c -o qlnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rlnorm.c -o rlnorm.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c df.c -o df.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pf.c -o pf.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qf.c -o qf.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rf.c -o rf.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dnf.c -o dnf.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dt.c -o dt.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pt.c -o pt.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qt.c -o qt.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rt.c -o rt.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dnt.c -o dnt.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dchisq.c -o dchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pchisq.c -o pchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qchisq.c -o qchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rchisq.c -o rchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rnchisq.c -o rnchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dbinom.c -o dbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pbinom.c -o pbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qbinom.c -o qbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rbinom.c -o rbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rmultinom.c -o rmultinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dcauchy.c -o dcauchy.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pcauchy.c -o pcauchy.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qcauchy.c -o qcauchy.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rcauchy.c -o rcauchy.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dexp.c -o dexp.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pexp.c -o pexp.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qexp.c -o qexp.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rexp.c -o rexp.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dgeom.c -o dgeom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pgeom.c -o pgeom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qgeom.c -o qgeom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rgeom.c -o rgeom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dhyper.c -o dhyper.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c phyper.c -o phyper.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qhyper.c -o qhyper.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rhyper.c -o rhyper.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dnbinom.c -o dnbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pnbinom.c -o pnbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qnbinom.c -o qnbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rnbinom.c -o rnbinom.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dpois.c -o dpois.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c ppois.c -o ppois.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qpois.c -o qpois.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rpois.c -o rpois.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dweibull.c -o dweibull.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pweibull.c -o pweibull.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qweibull.c -o qweibull.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rweibull.c -o rweibull.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dlogis.c -o dlogis.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c plogis.c -o plogis.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qlogis.c -o qlogis.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rlogis.c -o rlogis.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dnchisq.c -o dnchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pnchisq.c -o pnchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qnchisq.c -o qnchisq.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dnbeta.c -o dnbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pnbeta.c -o pnbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qnbeta.c -o qnbeta.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pnf.c -o pnf.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pnt.c -o pnt.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qnf.c -o qnf.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qnt.c -o qnt.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c ptukey.c -o ptukey.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qtukey.c -o qtukey.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c toms708.c -o toms708.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c wilcox.c -o wilcox.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c signrank.c -o signrank.o | |
| ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o | |
| ranlib libnmath.a | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/nmath' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/nmath' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| config.status: creating src/unix/Makefile | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| making Rembedded.d from Rembedded.c | |
| making dynload.d from dynload.c | |
| making system.d from system.c | |
| making sys-unix.d from sys-unix.c | |
| making sys-std.d from sys-std.c | |
| making X11.d from X11.c | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c Rembedded.c -o Rembedded.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dynload.c -o dynload.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c system.c -o system.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sys-unix.c -o sys-unix.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sys-std.c -o sys-std.o | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c X11.c -o X11.o | |
| ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o | |
| ranlib libunix.a | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -DR_HOME='"/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0"' \ | |
| -o Rscript ./Rscript.c | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| config.status: creating src/main/Makefile | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| making CommandLineArgs.d from CommandLineArgs.c | |
| making Rdynload.d from Rdynload.c | |
| making Renviron.d from Renviron.c | |
| making RNG.d from RNG.c | |
| making agrep.d from agrep.c | |
| making apply.d from apply.c | |
| making arithmetic.d from arithmetic.c | |
| making array.d from array.c | |
| making attrib.d from attrib.c | |
| making bind.d from bind.c | |
| making builtin.d from builtin.c | |
| making character.d from character.c | |
| making coerce.d from coerce.c | |
| making colors.d from colors.c | |
| making complex.d from complex.c | |
| making connections.d from connections.c | |
| making context.d from context.c | |
| making cum.d from cum.c | |
| making dcf.d from dcf.c | |
| making datetime.d from datetime.c | |
| making debug.d from debug.c | |
| making deparse.d from deparse.c | |
| making devices.d from devices.c | |
| making dotcode.d from dotcode.c | |
| making dounzip.d from dounzip.c | |
| making dstruct.d from dstruct.c | |
| making duplicate.d from duplicate.c | |
| making edit.d from edit.c | |
| making engine.d from engine.c | |
| making envir.d from envir.c | |
| making errors.d from errors.c | |
| making eval.d from eval.c | |
| making format.d from format.c | |
| making gevents.d from gevents.c | |
| making gram.d from gram.c | |
| making gram-ex.d from gram-ex.c | |
| making graphics.d from graphics.c | |
| making grep.d from grep.c | |
| making identical.d from identical.c | |
| making inlined.d from inlined.c | |
| making inspect.d from inspect.c | |
| making internet.d from internet.c | |
| making iosupport.d from iosupport.c | |
| making lapack.d from lapack.c | |
| making list.d from list.c | |
| making localecharset.d from localecharset.c | |
| making logic.d from logic.c | |
| making main.d from main.c | |
| making mapply.d from mapply.c | |
| making match.d from match.c | |
| making memory.d from memory.c | |
| making names.d from names.c | |
| making objects.d from objects.c | |
| making options.d from options.c | |
| making paste.d from paste.c | |
| making platform.d from platform.c | |
| making plot.d from plot.c | |
| making plot3d.d from plot3d.c | |
| making plotmath.d from plotmath.c | |
| making print.d from print.c | |
| making printarray.d from printarray.c | |
| making printvector.d from printvector.c | |
| making printutils.d from printutils.c | |
| making qsort.d from qsort.c | |
| making radixsort.d from radixsort.c | |
| making random.d from random.c | |
| making raw.d from raw.c | |
| making registration.d from registration.c | |
| making relop.d from relop.c | |
| making rlocale.d from rlocale.c | |
| making saveload.d from saveload.c | |
| making scan.d from scan.c | |
| making seq.d from seq.c | |
| making serialize.d from serialize.c | |
| making sort.d from sort.c | |
| making source.d from source.c | |
| making split.d from split.c | |
| making sprintf.d from sprintf.c | |
| making startup.d from startup.c | |
| making subassign.d from subassign.c | |
| making subscript.d from subscript.c | |
| making subset.d from subset.c | |
| making summary.d from summary.c | |
| making sysutils.d from sysutils.c | |
| making times.d from times.c | |
| making unique.d from unique.c | |
| making util.d from util.c | |
| making version.d from version.c | |
| making g_alab_her.d from g_alab_her.c | |
| making g_cntrlify.d from g_cntrlify.c | |
| making g_fontdb.d from g_fontdb.c | |
| making g_her_glyph.d from g_her_glyph.c | |
| making Rmain.d from Rmain.c | |
| making alloca.d from alloca.c | |
| making mkdtemp.d from mkdtemp.c | |
| making strdup.d from strdup.c | |
| making strncasecmp.d from strncasecmp.c | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c CommandLineArgs.c -o CommandLineArgs.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c Rdynload.c -o Rdynload.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c Renviron.c -o Renviron.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c RNG.c -o RNG.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c agrep.c -o agrep.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c apply.c -o apply.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c arithmetic.c -o arithmetic.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c array.c -o array.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c attrib.c -o attrib.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c bind.c -o bind.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c builtin.c -o builtin.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c character.c -o character.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c coerce.c -o coerce.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c colors.c -o colors.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c complex.c -o complex.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c connections.c -o connections.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c context.c -o context.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c cum.c -o cum.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dcf.c -o dcf.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c datetime.c -o datetime.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c debug.c -o debug.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c deparse.c -o deparse.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c devices.c -o devices.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dotcode.c -o dotcode.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dounzip.c -o dounzip.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dstruct.c -o dstruct.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c duplicate.c -o duplicate.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c edit.c -o edit.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c engine.c -o engine.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c envir.c -o envir.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c errors.c -o errors.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c eval.c -o eval.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c format.c -o format.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gevents.c -o gevents.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gram.c -o gram.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gram-ex.c -o gram-ex.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c graphics.c -o graphics.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c grep.c -o grep.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c identical.c -o identical.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c inlined.c -o inlined.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c inspect.c -o inspect.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c internet.c -o internet.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c iosupport.c -o iosupport.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c lapack.c -o lapack.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c list.c -o list.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c localecharset.c -o localecharset.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c logic.c -o logic.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c main.c -o main.o | |
| main.c: In function ‘dummy_ii’: | |
| main.c:1669:5: warning: function returns address of local variable [-Wreturn-local-addr] | |
| return (uintptr_t) ⅈ | |
| ^ | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c mapply.c -o mapply.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c match.c -o match.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c memory.c -o memory.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c names.c -o names.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c objects.c -o objects.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c options.c -o options.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c paste.c -o paste.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c platform.c -o platform.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c plot.c -o plot.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c plot3d.c -o plot3d.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c plotmath.c -o plotmath.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c print.c -o print.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c printarray.c -o printarray.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c printvector.c -o printvector.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c printutils.c -o printutils.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c qsort.c -o qsort.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c radixsort.c -o radixsort.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c random.c -o random.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c raw.c -o raw.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c registration.c -o registration.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c relop.c -o relop.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rlocale.c -o rlocale.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c saveload.c -o saveload.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c scan.c -o scan.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c seq.c -o seq.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c serialize.c -o serialize.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sort.c -o sort.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c source.c -o source.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c split.c -o split.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sprintf.c -o sprintf.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c startup.c -o startup.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c subassign.c -o subassign.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c subscript.c -o subscript.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c subset.c -o subset.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c summary.c -o summary.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sysutils.c -o sysutils.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c times.c -o times.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c unique.c -o unique.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c util.c -o util.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c version.c -o version.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c g_alab_her.c -o g_alab_her.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c g_cntrlify.c -o g_cntrlify.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c g_fontdb.c -o g_fontdb.o | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c g_her_glyph.c -o g_her_glyph.o | |
| gfortran -fopenmp -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c xxxpr.f -o xxxpr.o | |
| gcc -std=gnu99 -shared -fopenmp -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lopenblas -lgfortran -lgfortran -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -lm -lpthread | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| mkdir -p -- /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/bin/exec | |
| mkdir -p -- /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/lib | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c Rmain.c -o Rmain.o | |
| gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o R.bin Rmain.o -lR | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| making Rhttpd.d from Rhttpd.c | |
| making Lapack.d from Lapack.c | |
| making Rsock.d from Rsock.c | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c Lapack.c -o Lapack.o | |
| making internet.d from internet.c | |
| making libcurl.d from libcurl.c | |
| making nanoftp.d from nanoftp.c | |
| making nanohttp.d from nanohttp.c | |
| making sock.d from sock.c | |
| making sockconn.d from sockconn.c | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o | |
| gcc -std=gnu99 -shared -L../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o lapack.so Lapack.o -lR -lopenblas -lgfortran -lopenblas -lgfortran -lgfortran | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| mkdir -p -- /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/modules | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c Rsock.c -o Rsock.o | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c internet.c -o internet.o | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c libcurl.c -o libcurl.o | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c nanoftp.c -o nanoftp.o | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c nanohttp.c -o nanohttp.o | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c sock.c -o sock.o | |
| gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -fopenmp -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -fvisibility=hidden -c sockconn.c -o sockconn.o | |
| gcc -std=gnu99 -shared -L../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -L/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib -lcurl -lR | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| mkdir -p -- ../../library | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/profile' | |
| building system startup profile | |
| mkdir -p -- ../../../library/base/R | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/profile' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/translations' | |
| building package 'translations' | |
| mkdir -p -- ../../../library/translations | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/translations' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/translations' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/translations' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| building package 'base' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| mkdir -p -- ../../../library/base/demo | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| building package 'tools' | |
| mkdir -p -- ../../../library/tools | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| mkdir -p -- ../../../library/tools/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools/src' | |
| making text.d from text.c | |
| making init.d from init.c | |
| making Rmd5.d from Rmd5.c | |
| making md5.d from md5.c | |
| making signals.d from signals.c | |
| making install.d from install.c | |
| making getfmts.d from getfmts.c | |
| making http.d from http.c | |
| making gramLatex.d from gramLatex.c | |
| making gramRd.d from gramRd.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c text.c -o text.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c init.c -o init.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c Rmd5.c -o Rmd5.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c md5.c -o md5.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c signals.c -o signals.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c install.c -o install.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c getfmts.c -o getfmts.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c http.c -o http.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gramLatex.c -o gramLatex.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gramRd.c -o gramRd.o | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools/src' | |
| mkdir -p -- ../../../../library/tools/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| installing 'sysdata.rda' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/compiler' | |
| building package 'compiler' | |
| mkdir -p -- ../../../library/compiler | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/compiler' | |
| mkdir -p -- ../../../library/compiler/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/compiler' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/compiler' | |
| byte-compiling package 'compiler' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/compiler' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/compiler' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| byte-compiling package 'base' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| byte-compiling package 'tools' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| building package 'utils' | |
| mkdir -p -- ../../../library/utils | |
| mkdir -p -- ../../../library/utils/doc | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| mkdir -p -- ../../../library/utils/R | |
| mkdir -p -- ../../../library/utils/Sweave | |
| mkdir -p -- ../../../library/utils/misc | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils/src' | |
| making init.d from init.c | |
| making io.d from io.c | |
| making size.d from size.c | |
| making sock.d from sock.c | |
| making stubs.d from stubs.c | |
| making utils.d from utils.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c init.c -o init.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c io.c -o io.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c size.c -o size.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sock.c -o sock.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c stubs.c -o stubs.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c utils.c -o utils.o | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils/src' | |
| mkdir -p -- ../../../../library/utils/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| installing 'sysdata.rda' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| byte-compiling package 'utils' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/utils' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| building package 'grDevices' | |
| mkdir -p -- ../../../library/grDevices | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| mkdir -p -- ../../../library/grDevices/R | |
| mkdir -p -- ../../../library/grDevices/afm | |
| mkdir -p -- ../../../library/grDevices/enc | |
| mkdir -p -- ../../../library/grDevices/icc | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices/src' | |
| making axis_scales.d from axis_scales.c | |
| making chull.d from chull.c | |
| making devices.d from devices.c | |
| making init.d from init.c | |
| making stubs.d from stubs.c | |
| making colors.d from colors.c | |
| making devCairo.d from devCairo.c | |
| making devPicTeX.d from devPicTeX.c | |
| making devPS.d from devPS.c | |
| making devQuartz.d from devQuartz.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c axis_scales.c -o axis_scales.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c chull.c -o chull.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c devices.c -o devices.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c init.c -o init.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c stubs.c -o stubs.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c colors.c -o colors.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c devCairo.c -o devCairo.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c devPicTeX.c -o devPicTeX.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c devPS.c -o devPS.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c devQuartz.c -o devQuartz.o | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices/src' | |
| mkdir -p -- ../../../../library/grDevices/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| byte-compiling package 'grDevices' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grDevices' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| building package 'graphics' | |
| mkdir -p -- ../../../library/graphics | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| mkdir -p -- ../../../library/graphics/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics/src' | |
| making init.d from init.c | |
| making base.d from base.c | |
| making graphics.d from graphics.c | |
| making par.d from par.c | |
| making plot.d from plot.c | |
| making plot3d.d from plot3d.c | |
| making stem.d from stem.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c init.c -o init.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c base.c -o base.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c graphics.c -o graphics.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c par.c -o par.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c plot.c -o plot.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c plot3d.c -o plot3d.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c stem.c -o stem.o | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics/src' | |
| mkdir -p -- ../../../../library/graphics/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| byte-compiling package 'graphics' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/graphics' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| building package 'stats' | |
| mkdir -p -- ../../../library/stats | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| mkdir -p -- ../../../library/stats/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats/src' | |
| making init.d from init.c | |
| making kmeans.d from kmeans.c | |
| making ansari.d from ansari.c | |
| making bandwidths.d from bandwidths.c | |
| making chisqsim.d from chisqsim.c | |
| making d2x2xk.d from d2x2xk.c | |
| making fexact.d from fexact.c | |
| making kendall.d from kendall.c | |
| making ks.d from ks.c | |
| making line.d from line.c | |
| making smooth.d from smooth.c | |
| making prho.d from prho.c | |
| making swilk.d from swilk.c | |
| making ksmooth.d from ksmooth.c | |
| making loessc.d from loessc.c | |
| making monoSpl.d from monoSpl.c | |
| making isoreg.d from isoreg.c | |
| making Srunmed.d from Srunmed.c | |
| making dblcen.d from dblcen.c | |
| making distance.d from distance.c | |
| making hclust-utils.d from hclust-utils.c | |
| making nls.d from nls.c | |
| making rWishart.d from rWishart.c | |
| making HoltWinters.d from HoltWinters.c | |
| making PPsum.d from PPsum.c | |
| making arima.d from arima.c | |
| making burg.d from burg.c | |
| making filter.d from filter.c | |
| making mAR.d from mAR.c | |
| making pacf.d from pacf.c | |
| making starma.d from starma.c | |
| making port.d from port.c | |
| making family.d from family.c | |
| making sbart.d from sbart.c | |
| making approx.d from approx.c | |
| making loglin.d from loglin.c | |
| making lowess.d from lowess.c | |
| making massdist.d from massdist.c | |
| making splines.d from splines.c | |
| making lm.d from lm.c | |
| making complete_cases.d from complete_cases.c | |
| making cov.d from cov.c | |
| making deriv.d from deriv.c | |
| making fft.d from fft.c | |
| making fourier.d from fourier.c | |
| making model.d from model.c | |
| making optim.d from optim.c | |
| making optimize.d from optimize.c | |
| making integrate.d from integrate.c | |
| making random.d from random.c | |
| making distn.d from distn.c | |
| making zeroin.d from zeroin.c | |
| making rcont.d from rcont.c | |
| making influence.d from influence.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c init.c -o init.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c kmeans.c -o kmeans.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c ansari.c -o ansari.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c bandwidths.c -o bandwidths.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c chisqsim.c -o chisqsim.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c d2x2xk.c -o d2x2xk.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fexact.c -o fexact.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c kendall.c -o kendall.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c ks.c -o ks.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c line.c -o line.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c smooth.c -o smooth.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c prho.c -o prho.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c swilk.c -o swilk.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c ksmooth.c -o ksmooth.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c loessc.c -o loessc.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c monoSpl.c -o monoSpl.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c isoreg.c -o isoreg.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c Srunmed.c -o Srunmed.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c dblcen.c -o dblcen.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c distance.c -o distance.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c hclust-utils.c -o hclust-utils.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c nls.c -o nls.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rWishart.c -o rWishart.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c HoltWinters.c -o HoltWinters.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c PPsum.c -o PPsum.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c arima.c -o arima.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c burg.c -o burg.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c filter.c -o filter.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c mAR.c -o mAR.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c pacf.c -o pacf.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c starma.c -o starma.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c port.c -o port.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c family.c -o family.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c sbart.c -o sbart.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c approx.c -o approx.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c loglin.c -o loglin.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c lowess.c -o lowess.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c massdist.c -o massdist.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c splines.c -o splines.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c lm.c -o lm.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c complete_cases.c -o complete_cases.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c cov.c -o cov.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c deriv.c -o deriv.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fft.c -o fft.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fourier.c -o fourier.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c model.c -o model.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c optim.c -o optim.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c optimize.c -o optimize.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c integrate.c -o integrate.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c random.c -o random.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c distn.c -o distn.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c zeroin.c -o zeroin.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rcont.c -o rcont.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fopenmp -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c influence.c -o influence.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c bsplvd.f -o bsplvd.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c bvalue.f -o bvalue.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c bvalus.f -o bvalus.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c loessf.f -o loessf.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c ppr.f -o ppr.o | |
| loessf.f:59.14: | |
| j=DBLE(j)/2.D0 | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:1893.14: | |
| m=DBLE(l+u)/2.D0 | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:1398.20: | |
| i=phi(pi(ii)) | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:927.12: | |
| lg=DBLE(lg)/2.D0 | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:522.22: | |
| if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:1204.13: | |
| ifloor=x | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:834.22: | |
| if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:1582.18: | |
| i1=dble((d+2)*(d+1))/2.d0 | |
| 1 | |
| Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) | |
| loessf.f:472.25: | |
| subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) | |
| 1 | |
| Warning: Unused dummy argument 'n' at (1) | |
| loessf.f:472.39: | |
| subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) | |
| 1 | |
| Warning: Unused dummy argument 'nc' at (1) | |
| loessf.f:827.31: | |
| subroutine ehg197(deg,tau,d,f,dk,trl) | |
| 1 | |
| Warning: Unused dummy argument 'tau' at (1) | |
| loessf.f:1984.31: | |
| subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) | |
| 1 | |
| Warning: Unused dummy argument 'kappa' at (1) | |
| loessf.f:1984.47: | |
| subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) | |
| 1 | |
| Warning: Unused dummy argument 'nv' at (1) | |
| loessf.f:1984.53: | |
| subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) | |
| 1 | |
| Warning: Unused dummy argument 'nvmax' at (1) | |
| loessf.f:1497.50: | |
| subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) | |
| 1 | |
| Warning: Unused dummy argument 'liv' at (1) | |
| loessf.f:1497.53: | |
| subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) | |
| 1 | |
| Warning: Unused dummy argument 'lv' at (1) | |
| loessf.f:1648.30: | |
| subroutine lowese(iv,liv,lv,wv,m,z,s) | |
| 1 | |
| Warning: Unused dummy argument 'liv' at (1) | |
| loessf.f:1648.33: | |
| subroutine lowese(iv,liv,lv,wv,m,z,s) | |
| 1 | |
| Warning: Unused dummy argument 'lv' at (1) | |
| loessf.f:1667.39: | |
| subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) | |
| 1 | |
| Warning: Unused dummy argument 'liv' at (1) | |
| loessf.f:1667.42: | |
| subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) | |
| 1 | |
| Warning: Unused dummy argument 'lv' at (1) | |
| loessf.f:1699.30: | |
| subroutine lowesl(iv,liv,lv,wv,m,z,l) | |
| 1 | |
| Warning: Unused dummy argument 'liv' at (1) | |
| loessf.f:1699.33: | |
| subroutine lowesl(iv,liv,lv,wv,m,z,l) | |
| 1 | |
| Warning: Unused dummy argument 'lv' at (1) | |
| loessf.f:1721.33: | |
| subroutine lowesr(yy,iv,liv,lv,wv) | |
| 1 | |
| Warning: Unused dummy argument 'liv' at (1) | |
| loessf.f:1721.36: | |
| subroutine lowesr(yy,iv,liv,lv,wv) | |
| 1 | |
| Warning: Unused dummy argument 'lv' at (1) | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c qsbart.f -o qsbart.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c sgram.f -o sgram.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c sinerp.f -o sinerp.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c sslvrg.f -o sslvrg.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c stxwx.f -o stxwx.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c hclust.f -o hclust.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c kmns.f -o kmns.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c eureka.f -o eureka.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c stl.f -o stl.o | |
| gfortran -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -ffloat-store -c portsrc.f -o portsrc.o | |
| gfortran -fvisibility=hidden -fpic -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops -c lminfl.f -o lminfl.o | |
| portsrc.f: In function ‘i7do’: | |
| portsrc.f:6340:0: warning: ‘ncomp’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| * MAXLST,NCOMP,NUMINC,NUMLST,NUMORD,NUMWGT | |
| ^ | |
| portsrc.f:6339:0: warning: ‘jcol’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC, | |
| ^ | |
| portsrc.f: In function ‘df7dhb’: | |
| portsrc.f:12276:0: warning: ‘pp1o2’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| HPI = HES + PP1O2 | |
| ^ | |
| portsrc.f: In function ‘dl7mst’: | |
| portsrc.f:5328:0: warning: ‘alphak’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | |
| ^ | |
| portsrc.f:5463:0: warning: ‘psifac’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 | |
| ^ | |
| portsrc.f: In function ‘dg7qts’: | |
| portsrc.f:10089:0: warning: ‘gtsta’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| V(GTSTEP) = -GTSTA | |
| ^ | |
| portsrc.f:10008:0: warning: ‘alphak’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) | |
| ^ | |
| portsrc.f:10003:0: warning: ‘phi’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| LK = DMAX1(LK, PHI*W(PHIPIN)) | |
| ^ | |
| portsrc.f:10144:0: warning: ‘kamin’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| IF (KA .GE. KAMIN) GO TO 340 | |
| ^ | |
| portsrc.f: In function ‘dd7dgb’: | |
| portsrc.f:11900:0: warning: ‘nred’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| V(NREDUC) = NRED | |
| ^ | |
| portsrc.f:11903:0: warning: ‘dnwtst’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| V(DST0) = DNWTST | |
| ^ | |
| portsrc.f: In function ‘dg7qsb’: | |
| portsrc.f:2390:0: warning: ‘nred’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| V(NREDUC) = NRED | |
| ^ | |
| portsrc.f:2389:0: warning: ‘ds0’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| 60 V(DST0) = DS0 | |
| ^ | |
| portsrc.f: In function ‘dl7msb’: | |
| portsrc.f:7892:0: warning: ‘nred’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| V(NREDUC) = NRED | |
| ^ | |
| portsrc.f:7891:0: warning: ‘ds0’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| 90 V(DST0) = DS0 | |
| ^ | |
| portsrc.f: In function ‘df7hes’: | |
| portsrc.f:8370:0: warning: ‘hes’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| 210 IV(FDH) = HES | |
| ^ | |
| portsrc.f: In function ‘dparck’: | |
| portsrc.f:3456:0: warning: ‘miv2’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| IF (LIV .LT. MIV2) GO TO 300 | |
| ^ | |
| portsrc.f: In function ‘drn2gb’: | |
| portsrc.f:11737:0: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | |
| ^ | |
| portsrc.f:11694:0: warning: ‘rmat1’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) | |
| ^ | |
| portsrc.f:11694:0: warning: ‘qtr1’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| portsrc.f: In function ‘drn2g’: | |
| portsrc.f:440:0: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) | |
| ^ | |
| portsrc.f:348:0: warning: ‘rmat1’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) | |
| ^ | |
| portsrc.f:348:0: warning: ‘qtr1’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lopenblas -lgfortran -lopenblas -lgfortran -lgfortran -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats/src' | |
| mkdir -p -- ../../../../library/stats/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| byte-compiling package 'stats' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/datasets' | |
| building package 'datasets' | |
| mkdir -p -- ../../../library/datasets | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/datasets' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/datasets' | |
| mkdir -p -- ../../../library/datasets/data | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/datasets' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| building package 'methods' | |
| mkdir -p -- ../../../library/methods | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| mkdir -p -- ../../../library/methods/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods/src' | |
| making do_substitute_direct.d from do_substitute_direct.c | |
| making init.d from init.c | |
| making methods_list_dispatch.d from methods_list_dispatch.c | |
| making slot.d from slot.c | |
| making class_support.d from class_support.c | |
| making tests.d from tests.c | |
| making utils.d from utils.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c do_substitute_direct.c -o do_substitute_direct.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c init.c -o init.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c methods_list_dispatch.c -o methods_list_dispatch.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c slot.c -o slot.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c class_support.c -o class_support.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c tests.c -o tests.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c utils.c -o utils.o | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods/src' | |
| mkdir -p -- ../../../../library/methods/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| byte-compiling 'methods' | |
| initializing class and method definitions ... done | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/methods' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| building package 'grid' | |
| mkdir -p -- ../../../library/grid | |
| mkdir -p -- ../../../library/grid/doc | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| mkdir -p -- ../../../library/grid/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid/src' | |
| making gpar.d from gpar.c | |
| making grid.d from grid.c | |
| making just.d from just.c | |
| making layout.d from layout.c | |
| making matrix.d from matrix.c | |
| making register.d from register.c | |
| making state.d from state.c | |
| making unit.d from unit.c | |
| making util.d from util.c | |
| making viewport.d from viewport.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c gpar.c -o gpar.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c grid.c -o grid.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c just.c -o just.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c layout.c -o layout.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c matrix.c -o matrix.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c register.c -o register.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c state.c -o state.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c unit.c -o unit.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c util.c -o util.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c viewport.c -o viewport.o | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid/src' | |
| mkdir -p -- ../../../../library/grid/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| byte-compiling package 'grid' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/grid' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| building package 'splines' | |
| mkdir -p -- ../../../library/splines | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| mkdir -p -- ../../../library/splines/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines/src' | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c splines.c -o splines.o | |
| making splines.d from splines.c | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o splines.so splines.o -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines/src' | |
| mkdir -p -- ../../../../library/splines/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| byte-compiling package 'splines' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/splines' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats4' | |
| building package 'stats4' | |
| mkdir -p -- ../../../library/stats4 | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats4' | |
| mkdir -p -- ../../../library/stats4/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats4' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats4' | |
| byte-compiling package 'stats4' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats4' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/stats4' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tcltk' | |
| building package 'tcltk' | |
| mkdir -p -- ../../../library/tcltk/R | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tcltk' | |
| mkdir -p -- ../../../library/tcltk/exec | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tcltk' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tcltk' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| building package 'parallel' | |
| mkdir -p -- ../../../library/parallel | |
| mkdir -p -- ../../../library/parallel/doc | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| mkdir -p -- ../../../library/parallel/R | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| make[5]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel/src' | |
| making init.d from init.c | |
| making rngstream.d from rngstream.c | |
| making fork.d from fork.c | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c init.c -o init.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c rngstream.c -o rngstream.o | |
| gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -fvisibility=hidden -fpic -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -c fork.c -o fork.o | |
| gcc -std=gnu99 -shared -L../../../../lib -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR | |
| make[6]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel/src' | |
| mkdir -p -- ../../../../library/parallel/libs | |
| make[6]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel/src' | |
| make[5]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel/src' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| make[4]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| byte-compiling package 'parallel' | |
| make[4]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/parallel' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base' | |
| installing parsed NAMESPACE files | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tests' | |
| make[1]: Nothing to be done for `R'. | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tests' | |
| you should 'make docs' now ... | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0' | |
| configuring Java ... | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc' | |
| *** Cannot find any Java interpreter | |
| *** Please make sure 'java' is on your PATH or set JAVA_HOME correspondingly | |
| make[1]: [stamp-java] Error 1 (ignored) | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0' | |
| creating doc/NEWS | |
| creating doc/NEWS.pdf | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/manual' | |
| 'texi2any' v5.1 or later needed to make HTML docs but missing on your system. | |
| file R-FAQ.html will be missing and linked from CRAN | |
| creating doc/manual/version.texi | |
| 'texi2any' v5.1 or later needed to make HTML docs but missing on your system. | |
| file R-admin.html will be missing and linked from CRAN | |
| 'texi2any' v5.1 or later needed to make HTML docs but missing on your system. | |
| file R-data.html will be missing and linked from CRAN | |
| 'texi2any' v5.1 or later needed to make HTML docs but missing on your system. | |
| file R-exts.html will be missing and linked from CRAN | |
| 'texi2any' v5.1 or later needed to make HTML docs but missing on your system. | |
| file R-intro.html will be missing and linked from CRAN | |
| 'texi2any' v5.1 or later needed to make HTML docs but missing on your system. | |
| file R-ints.html will be missing and linked from CRAN | |
| 'texi2any' v5.1 or later needed to make HTML docs but missing on your system. | |
| file R-lang.html will be missing and linked from CRAN | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/html' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/html' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/manual' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| installing parsed Rd | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| stats | |
| utils | |
| base | |
| graphics | |
| methods | |
| datasets | |
| grDevices | |
| tools | |
| grid | |
| tcltk | |
| splines | |
| compiler | |
| stats4 | |
| parallel | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| building/updating package metadata ... | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| writing package indices | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| building all R object docs | |
| converting help for package 'base' | |
| abbreviate html | |
| agrep html | |
| all.equal html | |
| allnames html | |
| all html | |
| any html | |
| aperm html | |
| append html | |
| apply html | |
| args html | |
| Arithmetic html | |
| Rd warning: /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base/man/Arithmetic.Rd:158: missing file link 'Ops' | |
| array html | |
| as.data.frame html | |
| as.Date html | |
| as.environment html | |
| as.function html | |
| AsIs html | |
| as.POSIXlt html | |
| Rd warning: /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base/man/as.POSIXlt.Rd:126: missing file link 'format.POSIXlt' | |
| assignOps html | |
| assign html | |
| attach html | |
| attributes html | |
| attr html | |
| autoload html | |
| backsolve html | |
| base-defunct html | |
| base-deprecated html | |
| base-internal html | |
| basename html | |
| base-package html | |
| Bessel html | |
| bincode html | |
| bindenv html | |
| bitwise html | |
| body html | |
| bquote html | |
| browser html | |
| browserText html | |
| builtins html | |
| by html | |
| callCC html | |
| CallExternal html | |
| call html | |
| capabilities html | |
| cat html | |
| cbind html | |
| character html | |
| char.expand html | |
| charmatch html | |
| chartr html | |
| chkDots html | |
| chol2inv html | |
| chol html | |
| class html | |
| colnames html | |
| Colon html | |
| col html | |
| colSums html | |
| commandArgs html | |
| comment html | |
| Comparison html | |
| Rd warning: /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base/man/Comparison.Rd:101: missing file link 'Ops' | |
| complex html | |
| conditions html | |
| conflicts html | |
| connections html | |
| Constants html | |
| contributors html | |
| Control html | |
| copyright html | |
| c html | |
| crossprod html | |
| Cstack_info html | |
| cumsum html | |
| curlGetHeaders html | |
| cut.POSIXt html | |
| cut html | |
| data.class html | |
| dataframeHelpers html | |
| data.frame html | |
| data.matrix html | |
| date html | |
| Dates html | |
| DateTimeClasses html | |
| dcf html | |
| debug html | |
| Rd warning: /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base/man/debug.Rd:73: missing file link 'isRematched' | |
| Defunct html | |
| delayedAssign html | |
| deparseOpts html | |
| deparse html | |
| Deprecated html | |
| detach html | |
| det html | |
| dev html | |
| diag html | |
| diff html | |
| difftime html | |
| dimnames html | |
| dim html | |
| do.call html | |
| dontCheck html | |
| double html | |
| dput html | |
| droplevels html | |
| drop html | |
| dump html | |
| duplicated html | |
| dynload html | |
| eapply html | |
| eigen html | |
| encodeString html | |
| Encoding html | |
| environment html | |
| EnvVar html | |
| eval html | |
| exists html | |
| expand.grid html | |
| expression html | |
| Extract.data.frame html | |
| Extract.factor html | |
| Extract html | |
| Extremes html | |
| extSoftVersion html | |
| factor html | |
| file.access html | |
| file.choose html | |
| file.info html | |
| file.path html | |
| files2 html | |
| file.show html | |
| files html | |
| findInterval html | |
| find.package html | |
| forceAndCall html | |
| force html | |
| Foreign-internal html | |
| Foreign html | |
| formals html | |
| formatc html | |
| formatDL html | |
| format.info html | |
| format.pval html | |
| format html | |
| function html | |
| funprog html | |
| gc html | |
| gc.time html | |
| gctorture html | |
| getCallingDLL html | |
| getDLLRegisteredRoutines html | |
| getLoadedDLLs html | |
| getNativeSymbolInfo html | |
| get html | |
| gettext html | |
| getwd html | |
| gl html | |
| grepRaw html | |
| grep html | |
| groupGeneric html | |
| grouping html | |
| gzcon html | |
| hexmode html | |
| Hyperbolic html | |
| iconv html | |
| icuSetCollate html | |
| identical html | |
| identity html | |
| ifelse html | |
| integer html | |
| interaction html | |
| interactive html | |
| InternalMethods html | |
| Internal html | |
| invisible html | |
| is.finite html | |
| is.function html | |
| is.language html | |
| is.object html | |
| ISOdatetime html | |
| is.recursive html | |
| isR html | |
| isS4 html | |
| is.single html | |
| isSymmetric html | |
| is.unsorted html | |
| jitter html | |
| kappa html | |
| kronecker html | |
| l10n_info html | |
| labels html | |
| La_library html | |
| lapply html | |
| Last.value html | |
| La_version html | |
| lazyload html | |
| length html | |
| lengths html | |
| levels html | |
| libcurlVersion html | |
| libPaths html | |
| library.dynam html | |
| library html | |
| license html | |
| list2env html | |
| list.files html | |
| list html | |
| load html | |
| locales html | |
| logical html | |
| Logic html | |
| Rd warning: /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base/man/Logic.Rd:105: missing file link 'Ops' | |
| Log html | |
| LongVectors html | |
| lower.tri html | |
| ls html | |
| make.names html | |
| make.unique html | |
| mapply html | |
| margin.table html | |
| match.arg html | |
| match.call html | |
| match.fun html | |
| match html | |
| MathFun html | |
| matmult html | |
| mat.or.vec html | |
| matrix html | |
| maxCol html | |
| mean html | |
| memCompress html | |
| Memory-limits html | |
| memory.profile html | |
| Memory html | |
| merge html | |
| message html | |
| missing html | |
| mode html | |
| name html | |
| names html | |
| NA html | |
| nargs html | |
| nchar html | |
| nlevels html | |
| noquote html | |
| normalizePath html | |
| norm html | |
| notyet html | |
| nrow html | |
| ns-dblcolon html | |
| ns-hooks html | |
| ns-internal html | |
| ns-load html | |
| ns-reflect html | |
| ns-topenv html | |
| NULL html | |
| NumericConstants html | |
| numeric html | |
| numeric_version html | |
| octmode html | |
| on.exit html | |
| Ops.Date html | |
| options html | |
| order html | |
| outer html | |
| Paren html | |
| parse html | |
| paste html | |
| path.expand html | |
| pcre_config html | |
| Platform html | |
| pmatch html | |
| polyroot html | |
| pos.to.env html | |
| pretty html | |
| Primitive html | |
| print.dataframe html | |
| print.default html | |
| print html | |
| Rd warning: /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/base/man/print.Rd:82: missing file link '.print.via.format' | |
| prmatrix html | |
| proc.time html | |
| prod html | |
| prop.table html | |
| pushBack html | |
| qraux html | |
| qr html | |
| quit html | |
| Quotes html | |
| Random html | |
| Random-user html | |
| range html | |
| rank html | |
| rapply html | |
| rawConnection html | |
| rawConversion html | |
| raw html | |
| RdUtils html | |
| readBin html | |
| readChar html | |
| readline html | |
| readLines html | |
| readRDS html | |
| readRenviron html | |
| Recall html | |
| regex html | |
| reg.finalizer html | |
| regmatches html | |
| replace html | |
| rep html | |
| Reserved html | |
| rev html | |
| Rhome html | |
| rle html | |
| rm html | |
| round.POSIXt html | |
| Round html | |
| row.names html | |
| row html | |
| rowsum html | |
| sample html | |
| save html | |
| scale html | |
| scan html | |
| search html | |
| seek html | |
| seq.Date html | |
| seq.POSIXt html | |
| seq html | |
| sequence html | |
| serialize html | |
| sets html | |
| setTimeLimit html | |
| showConnections html | |
| shQuote html | |
| sign html | |
| sink html | |
| slice.index html | |
| slotOp html | |
| socketSelect html | |
| solve html | |
| sort html | |
| source html | |
| Special html | |
| split html | |
| sprintf html | |
| sQuote html | |
| srcfile html | |
| standardGeneric html | |
| startsWith html | |
| Startup html | |
| stopifnot html | |
| stop html | |
| strptime html | |
| strrep html | |
| strsplit html | |
| strtoi html | |
| strtrim html | |
| structure html | |
| strwrap html | |
| subset html | |
| substitute html | |
| substr html | |
| summary html | |
| sum html | |
| svd html | |
| sweep html | |
| switch html | |
| Syntax html | |
| Sys.getenv html | |
| Sys.getpid html | |
| Sys.glob html | |
| Sys.info html | |
| Sys.localeconv html | |
| sys.parent html | |
| Sys.readlink html | |
| Sys.setenv html | |
| Sys.setFileTime html | |
| Sys.sleep html | |
| sys.source html | |
| system2 html | |
| system.file html | |
| system html | |
| system.time html | |
| Sys.time html | |
| Sys.which html | |
| table html | |
| tabulate html | |
| tapply html | |
| taskCallbackManager html | |
| taskCallbackNames html | |
| taskCallback html | |
| tempfile html | |
| textconnections html | |
| tilde html | |
| timezones html | |
| toString html | |
| traceback html | |
| tracemem html | |
| trace html | |
| transform html | |
| t html | |
| Trig html | |
| trimws html | |
| try html | |
| typeof html | |
| unique html | |
| unlink html | |
| unlist html | |
| unname html | |
| UseMethod html | |
| userhooks html | |
| utf8Conversion html | |
| validUTF8 html | |
| Vectorize html | |
| vector html | |
| Version html | |
| warning html | |
| warnings html | |
| weekday.POSIXt html | |
| which.min html | |
| which html | |
| with html | |
| withVisible html | |
| writeLines html | |
| write html | |
| xtfrm html | |
| zapsmall html | |
| zMachine html | |
| zpackages html | |
| zScript html | |
| zutils html | |
| Signals html | |
| converting help for package 'tools' | |
| add_datalist html | |
| assertCondition html | |
| bibstyle html | |
| buildVignette html | |
| buildVignettes html | |
| charsets html | |
| checkFF html | |
| checkMD5sums html | |
| check_packages_in_dir html | |
| Rd warning: /apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/tools/man/check_packages_in_dir.Rd:121: missing file link 'parLapply' | |
| checkPoFiles html | |
| checkRdaFiles html | |
| checkRd html | |
| checkTnF html | |
| checkVignettes html | |
| codoc html | |
| compactPDF html | |
| CRANtools html | |
| delimMatch html | |
| dependsOnPkgs html | |
| encoded html | |
| fileutils html | |
| find_gs_cmd html | |
| getVignetteInfo html | |
| HTMLheader html | |
| HTMLlinks html | |
| loadRdMacros html | |
| makeLazyLoading html | |
| make_translations_pkg html | |
| makevars html | |
| md5sum html | |
| package_dependencies html | |
| package_native_routine_registration_skeleton | |
| html | |
| parseLatex html | |
| parse_Rd html | |
| print.via.format html | |
| pskill html | |
| psnice html | |
| QC html | |
| Rcmd html | |
| Rd2HTML html | |
| Rd2txt_options html | |
| Rdiff html | |
| Rdindex html | |
| RdTextFilter html | |
| Rdutils html | |
| read.00Index html | |
| showNonASCII html | |
| startDynamicHelp html | |
| SweaveTeXFilter html | |
| testInstalledPackage html | |
| texi2dvi html | |
| toHTML html | |
| tools-defunct html | |
| tools-deprecated html | |
| tools-package html | |
| toRd html | |
| toTitleCase html | |
| undoc html | |
| update_pkg_po html | |
| vignetteDepends html | |
| vignetteEngine html | |
| writePACKAGES html | |
| xgettext html | |
| converting help for package 'utils' | |
| adist html | |
| alarm html | |
| apropos html | |
| aregexec html | |
| aspell html | |
| aspell-utils html | |
| available.packages html | |
| BATCH html | |
| bibentry html | |
| browseEnv html | |
| browseURL html | |
| browseVignettes html | |
| bug.report html | |
| capture.output html | |
| changedFiles html | |
| chooseBioCmirror html | |
| chooseCRANmirror html | |
| citation html | |
| citEntry html | |
| cite html | |
| close.socket html | |
| combn html | |
| compareVersion html | |
| contrib.url html | |
| count.fields html | |
| create.post html | |
| dataentry html | |
| data html | |
| debugcall html | |
| debugger html | |
| demo html | |
| download.file html | |
| download.packages html | |
| edit.data.frame html | |
| edit html | |
| example html | |
| file.edit html | |
| filetest html | |
| findLineNum html | |
| fix html | |
| flush.console html | |
| format html | |
| getAnywhere html | |
| getFromNamespace html | |
| getParseData html | |
| getS3method html | |
| glob2rx html | |
| globalVariables html | |
| hasName html | |
| head html | |
| help html | |
| help.request html | |
| help.search html | |
| help.start html | |
| hsearch-utils html | |
| installed.packages html | |
| install.packages html | |
| INSTALL html | |
| isS3method html | |
| isS3stdGen html | |
| localeToCharset html | |
| ls_str html | |
| maintainer html | |
| make.packages.html html | |
| make.socket html | |
| menu html | |
| methods html | |
| mirrorAdmin html | |
| modifyList html | |
| news html | |
| object.size html | |
| packageDescription html | |
| packageName html | |
| package.skeleton html | |
| packageStatus html | |
| page html | |
| person html | |
| PkgUtils html | |
| process.events html | |
| promptData html | |
| promptPackage html | |
| prompt html | |
| Question html | |
| rcompgen html | |
| read.DIF html | |
| read.fortran html | |
| read.fwf html | |
| read.socket html | |
| read.table html | |
| recover html | |
| relist html | |
| remove.packages html | |
| REMOVE html | |
| removeSource html | |
| RHOME html | |
| roman html | |
| Rprofmem html | |
| Rprof html | |
| Rscript html | |
| RShowDoc html | |
| RSiteSearch html | |
| rtags html | |
| Rtangle html | |
| RweaveLatex html | |
| savehistory html | |
| select.list html | |
| sessionInfo html | |
| setRepositories html | |
| SHLIB html | |
| sourceutils html | |
| stack html | |
| strcapture html | |
| str html | |
| summaryRprof html | |
| Sweave html | |
| SweaveSyntConv html | |
| SweaveUtils html | |
| tar html | |
| toLatex html | |
| txtProgressBar html | |
| type.convert html | |
| untar html | |
| unzip html | |
| update.packages html | |
| URLencode html | |
| url.show html | |
| utils-defunct html | |
| utils-deprecated html | |
| utils-package html | |
| View html | |
| vignette html | |
| write.table html | |
| zip html | |
| COMPILE html | |
| LINK html | |
| memory.size html | |
| nsl html | |
| converting help for package 'grDevices' | |
| adjustcolor html | |
| as.graphicsAnnot html | |
| as.raster html | |
| axisTicks html | |
| boxplot.stats html | |
| cairo html | |
| check.options html | |
| chull html | |
| cm html | |
| col2rgb html | |
| colorRamp html | |
| colors html | |
| contourLines html | |
| convertColor html | |
| densCols html | |
| dev2bitmap html | |
| dev2 html | |
| devAskNewPage html | |
| dev.capabilities html | |
| dev.capture html | |
| dev.flush html | |
| Devices html | |
| dev.interactive html | |
| dev html | |
| dev.size html | |
| embedFonts html | |
| extendrange html | |
| getGraphicsEvent html | |
| gray.colors html | |
| gray html | |
| grDevices-package html | |
| grSoftVersion html | |
| hcl html | |
| Hershey html | |
| hsv html | |
| Japanese html | |
| make.rgb html | |
| n2mfrow html | |
| nclass html | |
| palette html | |
| palettes html | |
| pdf.options html | |
| pdf html | |
| pictex html | |
| plotmath html | |
| postscriptFonts html | |
| postscript html | |
| pretty.Date html | |
| ps.options html | |
| recordGraphics html | |
| recordplot html | |
| rgb2hsv html | |
| rgb html | |
| trans3d html | |
| Type1Font html | |
| xfig html | |
| xy.coords html | |
| xyTable html | |
| xyz.coords html | |
| png html | |
| quartzFonts html | |
| quartz html | |
| savePlot html | |
| x11Fonts html | |
| x11 html | |
| converting help for package 'graphics' | |
| abline html | |
| arrows html | |
| assocplot html | |
| axis.POSIXct html | |
| axis html | |
| axTicks html | |
| barplot html | |
| boxplot.matrix html | |
| boxplot html | |
| box html | |
| bxp html | |
| cdplot html | |
| clip html | |
| contour html | |
| convertXY html | |
| coplot html | |
| curve html | |
| dotchart html | |
| filled.contour html | |
| fourfoldplot html | |
| frame html | |
| graphics-defunct html | |
| graphics-package html | |
| grid html | |
| hist.POSIXt html | |
| hist html | |
| identify html | |
| image html | |
| layout html | |
| legend html | |
| lines html | |
| locator html | |
| matplot html | |
| mosaicplot html | |
| mtext html | |
| pairs html | |
| panel.smooth html | |
| par html | |
| persp html | |
| pie html | |
| plot.dataframe html | |
| plot.default html | |
| plot.design html | |
| plot.factor html | |
| plot.formula html | |
| plothistogram html | |
| plot.raster html | |
| plot html | |
| plot.table html | |
| plot.window html | |
| plot.xy html | |
| points html | |
| polygon html | |
| polypath html | |
| rasterImage html | |
| rect html | |
| rug html | |
| screen html | |
| segments html | |
| smoothScatter html | |
| spineplot html | |
| stars html | |
| stem html | |
| stripchart html | |
| strwidth html | |
| sunflowerplot html | |
| symbols html | |
| text html | |
| title html | |
| units html | |
| xspline html | |
| zAxis html | |
| converting help for package 'stats' | |
| acf2AR html | |
| acf html | |
| add1 html | |
| addmargins html | |
| aggregate html | |
| AIC html | |
| alias html | |
| anova.glm html | |
| anova.lm html | |
| anova.mlm html | |
| anova html | |
| ansari.test html | |
| aov html | |
| approxfun html | |
| arima0 html | |
| arima html | |
| arima.sim html | |
| ARMAacf html | |
| ARMAtoMA html | |
| ar.ols html | |
| ar html | |
| as.hclust html | |
| asOneSidedFormula html | |
| ave html | |
| bandwidth html | |
| bartlett.test html | |
| Beta html | |
| Binomial html | |
| binom.test html | |
| biplot.princomp html | |
| biplot html | |
| birthday html | |
| box.test html | |
| cancor html | |
| case.names html | |
| Cauchy html | |
| checkMFClasses html | |
| chisq.test html | |
| Chisquare html | |
| cmdscale html | |
| coef html | |
| complete.cases html | |
| confint html | |
| constrOptim html | |
| contrast html | |
| contrasts html | |
| convolve html | |
| cophenetic html | |
| cor html | |
| cor.test html | |
| cov.wt html | |
| cpgram html | |
| cutree html | |
| decompose html | |
| delete.response html | |
| dendrapply html | |
| dendrogram html | |
| density html | |
| deriv html | |
| deviance html | |
| df.residual html | |
| diffinv html | |
| dist html | |
| Distributions html | |
| dummy.coef html | |
| ecdf html | |
| eff.aovlist html | |
| effects html | |
| embed html | |
| expand.model.frame html | |
| Exponential html | |
| extractAIC html | |
| factanal html | |
| factor.scope html | |
| family html | |
| Fdist html | |
| fft html | |
| filter html | |
| fisher.test html | |
| fitted.values html | |
| fivenum html | |
| fligner.test html | |
| formula.nls html | |
| formula html | |
| friedman.test html | |
| ftable.formula html | |
| ftable html | |
| GammaDist html | |
| Geometric html | |
| getInitial html | |
| glm.control html | |
| glm html | |
| glm.summaries html | |
| hclust html | |
| heatmap html | |
| HoltWinters html | |
| Hypergeometric html | |
| identify.hclust html | |
| influence.measures html | |
| integrate html | |
| interaction.plot html | |
| IQR html | |
| is.empty html | |
| isoreg html | |
| KalmanLike html | |
| kernapply html | |
| kernel html | |
| kmeans html | |
| kruskal.test html | |
| ksmooth html | |
| ks.test html | |
| lag.plot html | |
| lag html | |
| line html | |
| listof html | |
| lmfit html | |
| lm.influence html | |
| lm html | |
| lm.summaries html | |
| loadings html | |
| loess.control html | |
| loess html | |
| Logistic html | |
| logLik html | |
| loglin html | |
| Lognormal html | |
| lowess html | |
| ls.diag html | |
| lsfit html | |
| ls.print html | |
| mad html | |
| mahalanobis html | |
| make.link html | |
| makepredictcall html | |
| manova html | |
| mantelhaen.test html | |
| mauchly.test html | |
| mcnemar.test html | |
| median html | |
| medpolish html | |
| model.extract html | |
| model.frame html | |
| model.matrix html | |
| model.tables html | |
| monthplot html | |
| mood.test html | |
| Multinom html | |
| na.action html | |
| na.contiguous html | |
| na.fail html | |
| nafns html | |
| naprint html | |
| NegBinomial html | |
| nextn html | |
| nlminb html | |
| nlm html | |
| nls.control html | |
| nls html | |
| NLSstAsymptotic html | |
| NLSstClosestX html | |
| NLSstLfAsymptote html | |
| NLSstRtAsymptote html | |
| nobs html | |
| Normal html | |
| numericDeriv html | |
| offset html | |
| oneway.test html | |
| optimize html | |
| optim html | |
| order.dendrogram html | |
| p.adjust html | |
| pairwise.prop.test html | |
| pairwise.table html | |
| pairwise.t.test html | |
| pairwise.wilcox.test html | |
| plot.acf html | |
| plot.density html | |
| plot.HoltWinters html | |
| plot.isoreg html | |
| plot.lm html | |
| plot.ppr html | |
| plot.profile.nls html | |
| plot.spec html | |
| plot.stepfun html | |
| plot.ts html | |
| Poisson html | |
| poisson.test html | |
| poly html | |
| power.anova.test html | |
| power.prop.test html | |
| power html | |
| power.t.test html | |
| ppoints html | |
| ppr html | |
| pp.test html | |
| prcomp html | |
| predict.arima html | |
| predict.glm html | |
| predict.HoltWinters html | |
| predict.lm html | |
| predict.loess html | |
| predict.nls html | |
| predict html | |
| predict.smooth.spline html | |
| preplot html | |
| princomp html | |
| printCoefmat html | |
| print.power.htest html | |
| print.ts html | |
| profile.nls html | |
| profile html | |
| proj html | |
| prop.test html | |
| prop.trend.test html | |
| qqnorm html | |
| quade.test html | |
| quantile html | |
| r2dtable html | |
| read.ftable html | |
| rect.hclust html | |
| relevel html | |
| reorder.dendrogram html | |
| reorder.factor html | |
| replications html | |
| reshape html | |
| residuals html | |
| runmed html | |
| rWishart html | |
| scatter.smooth html | |
| screeplot html | |
| sd html | |
| se.contrast html | |
| selfStart html | |
| setNames html | |
| shapiro.test html | |
| sigma html | |
| SignRank html | |
| simulate html | |
| smoothEnds html | |
| smooth html | |
| smooth.spline html | |
| sortedXyData html | |
| spec.ar html | |
| spec.pgram html | |
| spec.taper html | |
| spectrum html | |
| splinefun html | |
| SSasympOff html | |
| SSasympOrig html | |
| SSasymp html | |
| SSbiexp html | |
| SSD html | |
| SSfol html | |
| SSfpl html | |
| SSgompertz html | |
| SSlogis html | |
| SSmicmen html | |
| SSweibull html | |
| start html | |
| stat.anova html | |
| stats-defunct html | |
| stats-deprecated html | |
| stats-package html | |
| stepfun html | |
| step html | |
| stlmethods html | |
| stl html | |
| StructTS html | |
| summary.aov html | |
| summary.glm html | |
| summary.lm html | |
| summary.manova html | |
| summary.nls html | |
| summary.princomp html | |
| supsmu html | |
| symnum html | |
| TDist html | |
| termplot html | |
| terms.formula html | |
| terms.object html | |
| terms html | |
| time html | |
| toeplitz html | |
| tsdiag html | |
| ts-methods html | |
| ts.plot html | |
| tsp html | |
| ts html | |
| tsSmooth html | |
| ts.union html | |
| t.test html | |
| TukeyHSD html | |
| Tukey html | |
| Uniform html | |
| uniroot html | |
| update.formula html | |
| update html | |
| varimax html | |
| var.test html | |
| vcov html | |
| Weibull html | |
| weighted.mean html | |
| weighted.residuals html | |
| weights html | |
| Wilcoxon html | |
| wilcox.test html | |
| window html | |
| xtabs html | |
| zC html | |
| converting help for package 'datasets' | |
| ability.cov html | |
| airmiles html | |
| AirPassengers html | |
| airquality html | |
| anscombe html | |
| attenu html | |
| attitude html | |
| austres html | |
| beavers html | |
| BJsales html | |
| BOD html | |
| cars html | |
| ChickWeight html | |
| chickwts html | |
| co2 html | |
| crimtab html | |
| datasets-package html | |
| discoveries html | |
| DNase html | |
| esoph html | |
| eurodist html | |
| euro html | |
| EuStockMarkets html | |
| faithful html | |
| Formaldehyde html | |
| freeny html | |
| HairEyeColor html | |
| Harman23.cor html | |
| Harman74.cor html | |
| Indometh html | |
| infert html | |
| InsectSprays html | |
| iris html | |
| islands html | |
| JohnsonJohnson html | |
| LakeHuron html | |
| lh html | |
| LifeCycleSavings html | |
| Loblolly html | |
| longley html | |
| lynx html | |
| morley html | |
| mtcars html | |
| nhtemp html | |
| Nile html | |
| nottem html | |
| npk html | |
| occupationalStatus html | |
| Orange html | |
| OrchardSprays html | |
| PlantGrowth html | |
| precip html | |
| presidents html | |
| pressure html | |
| Puromycin html | |
| quakes html | |
| randu html | |
| rivers html | |
| rock html | |
| sleep html | |
| stackloss html | |
| state html | |
| sunspot.month html | |
| sunspots html | |
| sunspot.year html | |
| swiss html | |
| Theoph html | |
| Titanic html | |
| ToothGrowth html | |
| treering html | |
| trees html | |
| UCBAdmissions html | |
| UKDriverDeaths html | |
| UKgas html | |
| UKLungDeaths html | |
| USAccDeaths html | |
| USArrests html | |
| USJudgeRatings html | |
| USPersonalExpenditure html | |
| uspop html | |
| VADeaths html | |
| volcano html | |
| warpbreaks html | |
| women html | |
| WorldPhones html | |
| WWWusage html | |
| zCO2 html | |
| converting help for package 'methods' | |
| as html | |
| BasicClasses html | |
| callGeneric html | |
| canCoerce html | |
| cbind2 html | |
| Classes_Details html | |
| Classes html | |
| classesToAM html | |
| className html | |
| classRepresentation-class html | |
| Documentation html | |
| dotsMethods html | |
| EmptyMethodsList-class html | |
| EnvironmentClass html | |
| evalSource html | |
| findClass html | |
| findMethods html | |
| fixPrevious html | |
| genericFunction-class html | |
| GenericFunctions html | |
| getClass html | |
| getMethod html | |
| getPackageName html | |
| hasArg html | |
| implicitGeneric html | |
| inheritedSlotNames html | |
| initialize-methods html | |
| Introduction html | |
| is html | |
| isSealedMethod html | |
| LanguageClasses html | |
| languageEl html | |
| LinearMethodsList-class html | |
| localRefClass html | |
| MethodDefinition-class html | |
| methods-defunct html | |
| methods-deprecated html | |
| Methods_Details html | |
| Methods_for_Nongenerics html | |
| Methods_for_S3 html | |
| method.skeleton html | |
| MethodsList-class html | |
| MethodsList html | |
| methods-package html | |
| Methods html | |
| MethodSupport html | |
| methodUtilities html | |
| MethodWithNext-class html | |
| new html | |
| NextMethod html | |
| nonStructure-class html | |
| ObjectsWithPackage-class html | |
| promptClass html | |
| promptMethods html | |
| RClassUtils html | |
| refClass html | |
| removeMethod html | |
| representation html | |
| RMethodUtils html | |
| S3Part html | |
| S4groupGeneric html | |
| SClassExtension-class html | |
| selectSuperClasses html | |
| setAs html | |
| setClass html | |
| setClassUnion html | |
| setGeneric html | |
| setGroupGeneric html | |
| setIs html | |
| setLoadActions html | |
| setMethod html | |
| setOldClass html | |
| setSClass html | |
| showMethods html | |
| show html | |
| signature-class html | |
| slot html | |
| stdRefClass html | |
| StructureClasses html | |
| substituteDirect html | |
| testInheritedMethods html | |
| TraceClasses html | |
| validObject html | |
| zBasicFunsList html | |
| converting help for package 'grid' | |
| absolute.size html | |
| arrow html | |
| calcStringMetric html | |
| current.viewport html | |
| dataViewport html | |
| depth html | |
| drawDetails html | |
| editDetails html | |
| explode html | |
| gEdit html | |
| getNames html | |
| gpar html | |
| gPath html | |
| grid.add html | |
| grid.bezier html | |
| grid.cap html | |
| grid.circle html | |
| grid.clip html | |
| grid.convert html | |
| grid.copy html | |
| grid.curve html | |
| grid-defunct html | |
| grid.delay html | |
| grid.display.list html | |
| grid.DLapply html | |
| grid.draw html | |
| grid.edit html | |
| grid.force html | |
| grid.frame html | |
| grid.function html | |
| grid.get html | |
| grid.grab html | |
| grid.grep html | |
| grid.grill html | |
| grid.grob html | |
| grid-internal html | |
| grid.layout html | |
| grid.lines html | |
| grid.locator html | |
| grid.ls html | |
| grid.move.to html | |
| grid.newpage html | |
| grid.null html | |
| grid-package html | |
| grid.pack html | |
| grid.path html | |
| grid.place html | |
| grid.plot.and.legend html | |
| grid.points html | |
| grid.polygon html | |
| grid.pretty html | |
| grid.raster html | |
| Grid html | |
| grid.record html | |
| grid.rect html | |
| grid.refresh html | |
| grid.remove html | |
| grid.reorder html | |
| grid.roundrect html | |
| grid.segments html | |
| grid.set html | |
| grid.show.layout html | |
| grid.show.viewport html | |
| grid.text html | |
| grid.xaxis html | |
| grid.xspline html | |
| grid.yaxis html | |
| grobName html | |
| grobWidth html | |
| grobX html | |
| legendGrob html | |
| makeContent html | |
| plotViewport html | |
| resolveRasterSize html | |
| showGrob html | |
| showViewport html | |
| stringWidth html | |
| unit.c html | |
| unit.length html | |
| unit.pmin html | |
| unit html | |
| unit.rep html | |
| validDetails html | |
| valid.just html | |
| viewport html | |
| viewports html | |
| vpPath html | |
| widthDetails html | |
| xDetails html | |
| xsplinePoints html | |
| converting help for package 'splines' | |
| asVector html | |
| backSpline html | |
| bs html | |
| interpSpline html | |
| ns html | |
| periodicSpline html | |
| polySpline html | |
| predict.bSpline html | |
| predict.bs html | |
| splineDesign html | |
| splineKnots html | |
| splineOrder html | |
| splines-package html | |
| xyVector html | |
| converting help for package 'stats4' | |
| coef-methods html | |
| confint-methods html | |
| logLik-methods html | |
| mle-class html | |
| mle html | |
| plot-methods html | |
| profile-methods html | |
| profile.mle-class html | |
| show-methods html | |
| stats4-package html | |
| summary-methods html | |
| summary.mle-class html | |
| update-methods html | |
| vcov-methods html | |
| converting help for package 'tcltk' | |
| TclInterface html | |
| tclServiceMode html | |
| tcltk-defunct html | |
| tcltk-package html | |
| tk_choose.dir html | |
| tk_choose.files html | |
| TkCommands html | |
| tk_messageBox html | |
| tkpager html | |
| tkProgressBar html | |
| tk_select.list html | |
| tkStartGUI html | |
| TkWidgetcmds html | |
| TkWidgets html | |
| converting help for package 'compiler' | |
| compile html | |
| converting help for package 'parallel' | |
| clusterApply html | |
| detectCores html | |
| makeCluster html | |
| parallel-package html | |
| RngStream html | |
| splitIndices html | |
| children html | |
| mcaffinity html | |
| mcfork html | |
| mclapply html | |
| mcparallel html | |
| pvec html | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/Recommended' | |
| make[1]: Nothing to be done for `all'. | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library/Recommended' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| building/updating vignettes for package 'grid' ... | |
| processing 'grid.Rnw' | |
| building/updating vignettes for package 'parallel' ... | |
| building/updating vignettes for package 'utils' ... | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| == 2017-06-23 08:02:37,585 run.py:505 INFO parse_log_for_error msg: Command used: make -j 2 | |
| == 2017-06-23 08:02:37,586 run.py:507 INFO parse_log_for_error (some may be harmless) regExp (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) found: | |
| make[1]: [stamp-java] Error 1 (ignored) | |
| == 2017-06-23 08:02:37,586 run.py:464 WARNING Found 1 errors in command output (output: make[1]: [stamp-java] Error 1 (ignored)) | |
| == 2017-06-23 08:02:37,586 build_log.py:225 INFO testing... | |
| == 2017-06-23 08:02:37,586 easyblock.py:2301 INFO Starting test step | |
| == 2017-06-23 08:02:37,587 easyblock.py:2304 INFO Running method test_step part of step test | |
| == 2017-06-23 08:02:37,587 build_log.py:225 INFO installing... | |
| == 2017-06-23 08:02:37,587 easyblock.py:2301 INFO Starting install step | |
| == 2017-06-23 08:02:37,588 easyblock.py:2304 INFO Running method stage_install_step part of step install | |
| == 2017-06-23 08:02:37,588 easyblock.py:2304 INFO Running method make_installdir part of step install | |
| == 2017-06-23 08:02:37,588 easyblock.py:817 INFO Found old directory /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 | |
| == 2017-06-23 08:02:37,676 filetools.py:1141 INFO Path /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 successfully removed. | |
| == 2017-06-23 08:02:37,676 easyblock.py:824 INFO Removed old directory /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 | |
| == 2017-06-23 08:02:37,677 filetools.py:1045 INFO Creating directory /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2 (parents: True, set_gid: False, sticky: False) | |
| == 2017-06-23 08:02:37,677 easyblock.py:2304 INFO Running method install_step part of step install | |
| == 2017-06-23 08:02:37,677 run.py:162 INFO running cmd: make install | |
| == 2017-06-23 08:02:38,977 run.py:454 INFO cmd " make install " exited with exitcode 0 and output: | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/m4' | |
| make[1]: Nothing to be done for `install'. | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/m4' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tools' | |
| make[1]: Nothing to be done for `install'. | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tools' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc' | |
| installing doc ... | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/doc | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/share/man/man1 | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/html' | |
| installing doc/html ... | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/doc/html | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/html' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/manual' | |
| installing doc/manual ... | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/doc/manual | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/doc/manual/images | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc/manual' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/doc' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/etc' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/etc | |
| installing etc ... | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/etc' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/share' | |
| installing share ... | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/R | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/dictionaries | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/encodings | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/java | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/licenses | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/make | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/Rd | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/Rd/macros | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/sh | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/texmf | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/texmf/bibtex/bib | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/texmf/bibtex/bst | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share/texmf/tex/latex | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/share' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/scripts' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/bin | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/bin | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/scripts' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/include | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include/R_ext' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/include/R_ext | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include/R_ext' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/include' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/blas' | |
| make[3]: Nothing to be done for `install'. | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/blas' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| make[3]: Nothing to be done for `install'. | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/tre' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/xdr' | |
| make[3]: Nothing to be done for `install'. | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/xdr' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/intl' | |
| make[3]: Nothing to be done for `install'. | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra/intl' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/extra' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/appl' | |
| make[2]: Nothing to be done for `install'. | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/appl' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/nmath' | |
| make[2]: Nothing to be done for `install'. | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/nmath' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -I/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/include -I/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/include -DHAVE_CONFIG_H -I/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/include -I/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/include -I/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/include -I/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/include -I/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/include -L/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib -L/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib -L/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib -lpcre -lz -llzma -L/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib -L/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib -DR_HOME='"/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R"' \ | |
| -o Rscript ./Rscript.c | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/pkgconfig | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/unix' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/bin/exec | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/main' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/modules | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/internet' | |
| make[3]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| make[3]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules/lapack' | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/modules' | |
| make[2]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| mkdir -p -- /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/library | |
| installing packages ... | |
| building HTML index ... | |
| make[2]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src/library' | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/src' | |
| make[1]: Entering directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tests' | |
| make[1]: Nothing to be done for `install'. | |
| make[1]: Leaving directory `/apps/prod/easybuild/build/R/3.4.0/foss-2015a-bare.perftest2/R-3.4.0/tests' | |
| == 2017-06-23 08:02:38,978 build_log.py:225 INFO taking care of extensions... | |
| == 2017-06-23 08:02:38,979 easyblock.py:2301 INFO Starting extensions step | |
| == 2017-06-23 08:02:38,979 easyblock.py:2304 INFO Running method extensions_step part of step extensions | |
| == 2017-06-23 08:02:38,980 filetools.py:1045 INFO Creating directory /tmp/eb-N02tlq/tmpgsEd9U/all/R (parents: True, set_gid: False, sticky: False) | |
| == 2017-06-23 08:02:38,983 easyblock.py:2163 INFO Module file /tmp/eb-N02tlq/tmpgsEd9U/all/R/3.4.0-foss-2015a-bare.perftest2.lua written: help([[ | |
| Description | |
| =========== | |
| R is a free software environment for statistical computing and graphics. | |
| More information | |
| ================ | |
| - Homepage: http://www.r-project.org/ | |
| Included extensions | |
| =================== | |
| b-a, d-a, g-r, g-r, g-r, m-e, s-p, s-t, s-t, t-o, u-t | |
| ]]) | |
| whatis([[Description: R is a free software environment for statistical computing and graphics.]]) | |
| whatis([[Homepage: http://www.r-project.org/]]) | |
| whatis([[Extensions: b-a, d-a, g-r, g-r, g-r, m-e, s-p, s-t, s-t, t-o, u-t]]) | |
| local root = "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2" | |
| conflict("R") | |
| if not isloaded("foss/2015a") then | |
| load("foss/2015a") | |
| end | |
| if not isloaded("PCRE/8.36-foss-2015a") then | |
| load("PCRE/8.36-foss-2015a") | |
| end | |
| if not isloaded("XZ/5.2.0-GCC-4.9.2") then | |
| load("XZ/5.2.0-GCC-4.9.2") | |
| end | |
| if not isloaded("zlib/1.2.8-foss-2015a") then | |
| load("zlib/1.2.8-foss-2015a") | |
| end | |
| if not isloaded("bzip2/1.0.6-foss-2015a") then | |
| load("bzip2/1.0.6-foss-2015a") | |
| end | |
| if not isloaded("libreadline/6.3-foss-2015a") then | |
| load("libreadline/6.3-foss-2015a") | |
| end | |
| if not isloaded("ncurses/5.9-foss-2015a") then | |
| load("ncurses/5.9-foss-2015a") | |
| end | |
| if not isloaded("cURL/7.40.0-foss-2015a") then | |
| load("cURL/7.40.0-foss-2015a") | |
| end | |
| prepend_path("LD_LIBRARY_PATH", pathJoin(root, "lib64")) | |
| prepend_path("LD_LIBRARY_PATH", pathJoin(root, "lib64/R/lib")) | |
| prepend_path("LIBRARY_PATH", pathJoin(root, "lib64")) | |
| prepend_path("LIBRARY_PATH", pathJoin(root, "lib64/R/lib")) | |
| prepend_path("MANPATH", pathJoin(root, "share/man")) | |
| prepend_path("PATH", pathJoin(root, "bin")) | |
| prepend_path("PKG_CONFIG_PATH", pathJoin(root, "lib64/pkgconfig")) | |
| setenv("EBROOTR", root) | |
| setenv("EBVERSIONR", "3.4.0") | |
| setenv("EBDEVELR", pathJoin(root, "easybuild/R-3.4.0-foss-2015a-bare.perftest2-easybuild-devel")) | |
| setenv("R_SHARE_DIR", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/share") | |
| setenv("R_DOC_DIR", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/doc") | |
| setenv("R_HOME", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R") | |
| setenv("R_INCLUDE_DIR", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/include") | |
| -- Built with EasyBuild version 3.2.1 | |
| setenv("EBEXTSLISTR", "b-a,d-a,g-r,g-r,g-r,m-e,s-p,s-t,s-t,t-o,u-t") | |
| == 2017-06-23 08:02:38,983 filetools.py:1045 INFO Creating directory /tmp/eb-N02tlq/tmpgsEd9U/lang/R (parents: True, set_gid: False, sticky: False) | |
| == 2017-06-23 08:02:39,074 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,074 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,074 environment.py:97 INFO Environment variable PATH set to /apps/prod/easybuild/software/EasyBuild/3.2.1/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/ec2-user/.local/bin:/home/ec2-user/bin (previous value: '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/bin:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/bin:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/bin:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/bin:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/bin:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/bin:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/bin:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/bin:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/bin:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/bin:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/bin:/apps/prod/easybuild/software/GCC/4.9.2/bin:/apps/prod/easybuild/software/EasyBuild/3.2.1/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/ec2-user/.local/bin:/home/ec2-user/bin') | |
| == 2017-06-23 08:02:39,075 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,075 environment.py:97 INFO Environment variable MANPATH set to /usr/share/lmod/lmod/share/man:: (previous value: '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/share/man:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/man:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/share/man:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/man:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/share/man:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/share/man:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/share/man:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/share/man:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/share/man:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/share/man:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/share/man:/apps/prod/easybuild/software/GCC/4.9.2/share/man:/usr/share/lmod/lmod/share/man::') | |
| == 2017-06-23 08:02:39,075 environment.py:97 INFO Environment variable _ModuleTable_Sz_ set to 3 (previous value: '11') | |
| == 2017-06-23 08:02:39,075 environment.py:97 INFO Environment variable _ModuleTable001_ set to 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 (previous value: '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') | |
| == 2017-06-23 08:02:39,075 environment.py:97 INFO Environment variable _ModuleTable003_ set to dXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsWyJ2ZXJzaW9uIl09Mix9 (previous value: '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') | |
| == 2017-06-23 08:02:39,075 environment.py:97 INFO Environment variable MODULEPATH set to /apps/prod/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core (previous value: '/tmp/eb-N02tlq/tmpgsEd9U/all:/apps/prod/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core') | |
| == 2017-06-23 08:02:39,076 environment.py:97 INFO Environment variable _LMFILES_ set to /apps/prod/easybuild/modules/all/EasyBuild/3.2.1.lua (previous value: '/apps/prod/easybuild/modules/all/EasyBuild/3.2.1.lua:/apps/prod/easybuild/modules/all/GCC/4.9.2.lua:/apps/prod/easybuild/modules/all/numactl/2.0.10-GCC-4.9.2.lua:/apps/prod/easybuild/modules/all/hwloc/1.10.0-GCC-4.9.2.lua:/apps/prod/easybuild/modules/all/OpenMPI/1.8.4-GCC-4.9.2.lua:/apps/prod/easybuild/modules/all/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0.lua:/apps/prod/easybuild/modules/all/gompi/2015a.lua:/apps/prod/easybuild/modules/all/FFTW/3.3.4-gompi-2015a.lua:/apps/prod/easybuild/modules/all/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.lua:/apps/prod/easybuild/modules/all/foss/2015a.lua:/apps/prod/easybuild/modules/all/PCRE/8.36-foss-2015a.lua:/apps/prod/easybuild/modules/all/XZ/5.2.0-GCC-4.9.2.lua:/apps/prod/easybuild/modules/all/zlib/1.2.8-foss-2015a.lua:/apps/prod/easybuild/modules/all/bzip2/1.0.6-foss-2015a.lua:/apps/prod/easybuild/modules/all/libreadline/6.3-foss-2015a.lua:/apps/prod/easybuild/modules/all/ncurses/5.9-foss-2015a.lua:/apps/prod/easybuild/modules/all/cURL/7.40.0-foss-2015a.lua') | |
| == 2017-06-23 08:02:39,076 environment.py:97 INFO Environment variable LOADEDMODULES set to EasyBuild/3.2.1 (previous value: 'EasyBuild/3.2.1:GCC/4.9.2:numactl/2.0.10-GCC-4.9.2:hwloc/1.10.0-GCC-4.9.2:OpenMPI/1.8.4-GCC-4.9.2:OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0:gompi/2015a:FFTW/3.3.4-gompi-2015a:ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0:foss/2015a:PCRE/8.36-foss-2015a:XZ/5.2.0-GCC-4.9.2:zlib/1.2.8-foss-2015a:bzip2/1.0.6-foss-2015a:libreadline/6.3-foss-2015a:ncurses/5.9-foss-2015a:cURL/7.40.0-foss-2015a') | |
| == 2017-06-23 08:02:39,076 environment.py:97 INFO Environment variable _ModuleTable002_ set to 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 (previous value: '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') | |
| == 2017-06-23 08:02:39,076 environment.py:97 INFO Environment variable LMOD_DEFAULT_MODULEPATH set to /apps/prod/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core (previous value: '/tmp/eb-N02tlq/tmpgsEd9U/all:/apps/prod/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core') | |
| == 2017-06-23 08:02:39,121 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-06-23 08:02:39,121 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,165 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-06-23 08:02:39,165 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,208 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-06-23 08:02:39,208 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,253 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2017-06-23 08:02:39,253 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,253 modules.py:401 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /tmp/eb-N02tlq/tmpgsEd9U/all:/apps/prod/easybuild/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2017-06-23 08:02:39,340 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,340 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,342 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:39,342 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:39,342 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') | |
| == 2017-06-23 08:02:39,343 filetools.py:306 WARNING Could not find command 'lmod' (with permissions to read/execute it) in $PATH (['/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/bin', '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/bin', '/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/bin', '/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/bin', '/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/bin', '/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/bin', '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/bin', '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/bin', '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/bin', '/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/bin', '/apps/prod/easybuild/software/GCC/4.9.2/bin', '/apps/prod/easybuild/software/EasyBuild/3.2.1/bin', '/usr/local/bin', '/usr/bin', '/usr/local/sbin', '/usr/sbin', '/home/ec2-user/.local/bin', '/home/ec2-user/bin']) | |
| == 2017-06-23 08:02:39,343 filetools.py:298 INFO Command /usr/share/lmod/lmod/libexec/lmod found at /usr/share/lmod/lmod/libexec/lmod | |
| == 2017-06-23 08:02:39,343 modules.py:254 INFO Full path for module command is /usr/share/lmod/lmod/libexec/lmod, so using it | |
| == 2017-06-23 08:02:39,436 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,437 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,437 modules.py:384 INFO Prepended list of module paths with path used by EasyBuild: /apps/prod/easybuild/modules/all | |
| == 2017-06-23 08:02:39,530 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,530 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,625 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,625 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,719 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,719 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,813 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,814 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:39,814 modules.py:401 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /apps/prod/easybuild/modules/all:/tmp/eb-N02tlq/tmpgsEd9U/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2017-06-23 08:02:39,814 easyconfig.py:283 INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2017-06-23 08:02:39,815 easyconfig.py:1125 INFO Successfully obtained EB_R class instance from easybuild.easyblocks.r | |
| == 2017-06-23 08:02:39,815 easyconfig.py:1141 INFO Successfully obtained class 'EB_R' for easyblock 'None' (software name 'R') | |
| == 2017-06-23 08:02:39,817 easyconfig.py:411 INFO Parsing easyconfig file None with rawcontent: name = 'R' | |
| version = "3.4.0" | |
| versionsuffix = '-bare.perftest2' | |
| homepage = 'http://www.r-project.org/' | |
| description = """R is a free software environment for statistical computing and graphics.""" | |
| toolchain = {'name': 'foss', 'version': '2015a'} | |
| toolchainopts = {"optarch": True, "defaultopt": True, "unroll": True} | |
| sources = [SOURCE_TAR_GZ] | |
| source_urls = ['https://cran.r-project.org/src/base/R-%(version_major)s'] | |
| preconfigopts = '' | |
| preconfigopts += 'BLAS_LIBS="$LIBBLAS" ' | |
| preconfigopts += 'LAPACK_LIBS="$LIBLAPACK" ' | |
| preconfigopts += 'CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" ' | |
| preconfigopts += 'LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" ' | |
| configopts = "" | |
| configopts += "--with-lapack " | |
| configopts += "--with-blas " | |
| configopts += "--with-pic --enable-threads --enable-R-shlib " | |
| configopts += "--enable-prebuilt-html --with-recommended-packages=no " | |
| configopts += "--with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no " | |
| dependencies = [ | |
| # ('BItexmf', '3.4.0'), | |
| ('PCRE', '8.36'), | |
| ('XZ', '5.2.0', '', ('GCC', '4.9.2')), | |
| ('zlib', '1.2.8'), | |
| ('bzip2', '1.0.6'), | |
| ('libreadline', '6.3'), | |
| ('ncurses', '5.9'), | |
| # ('LibTIFF', '4.0.3'), # capabilities("tiff") | |
| # ('libpng', '1.6.17'), # capabilities("png") | |
| # ('libjpeg-turbo', '1.4.0', '', ('GCC', '4.9.2')), # capabilities("jpeg") | |
| ('cURL', '7.40.0'), # capabilities("libcurl") | |
| # ('cairo', '1.14.2'), # capabilities("cairo") | |
| # ('Tk','8.6.3','-no-X11'), # capabilities("tcltk") | |
| # ('Tcl','8.6.3'), # capabilities("tcltk") | |
| # ('Java', '1.8.0_131', '', True), # Java bindings are built if Java is found, might as well provide it | |
| ] | |
| modextravars = { | |
| "R_HOME": "%(installdir)s/lib64/R", | |
| "R_DOC_DIR": "%(installdir)s/lib64/R/doc", | |
| "R_SHARE_DIR": "%(installdir)s/lib64/R/share", | |
| "R_INCLUDE_DIR": "%(installdir)s/lib64/R/include", | |
| } | |
| exts_list = [ | |
| # default libraries, only here to sanity check their presence | |
| 'base', | |
| 'datasets', | |
| 'graphics', | |
| 'grDevices', | |
| 'grid', | |
| 'methods', | |
| 'splines', | |
| 'stats', | |
| 'stats4', | |
| 'tools', | |
| 'utils', | |
| ] | |
| moduleclass = 'lang' | |
| == 2017-06-23 08:02:39,818 parser.py:138 INFO Type checking of easyconfig parameter values passed! | |
| == 2017-06-23 08:02:39,818 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:39,819 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,819 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,819 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,819 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,819 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,819 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,820 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,820 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,820 easyconfig.py:444 INFO setting config option modextravars: value {'R_SHARE_DIR': '%(installdir)s/lib64/R/share', 'R_DOC_DIR': '%(installdir)s/lib64/R/doc', 'R_HOME': '%(installdir)s/lib64/R', 'R_INCLUDE_DIR': '%(installdir)s/lib64/R/include'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:39,820 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:39,820 easyconfig.py:444 INFO setting config option name: value R (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,820 easyconfig.py:444 INFO setting config option exts_list: value ['base', 'datasets', 'graphics', 'grDevices', 'grid', 'methods', 'splines', 'stats', 'stats4', 'tools', 'utils'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:39,821 easyconfig.py:444 INFO setting config option moduleclass: value lang (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,821 easyconfig.py:444 INFO setting config option preconfigopts: value BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK" CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,821 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,821 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,821 easyconfig.py:444 INFO setting config option sources: value ['%(name)s-%(version)s.tar.gz'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:39,821 easyconfig.py:444 INFO setting config option versionsuffix: value -bare.perftest2 (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,822 easyconfig.py:444 INFO setting config option version: value 3.4.0 (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,822 easyconfig.py:444 INFO setting config option dependencies: value [{'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '4.9.2', 'name': 'GCC'}, 'name': 'XZ', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.2.0', 'toolchain_inherited': False, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}] (type: <type 'list'>) | |
| == 2017-06-23 08:02:39,823 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,823 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:39,823 easyconfig.py:444 INFO setting config option source_urls: value ['https://cran.r-project.org/src/base/R-%(version_major)s'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:39,823 easyconfig.py:444 INFO setting config option toolchainopts: value {'optarch': True, 'unroll': True, 'defaultopt': True} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:39,824 easyconfig.py:444 INFO setting config option homepage: value http://www.r-project.org/ (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,824 easyconfig.py:444 INFO setting config option configopts: value --with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --enable-prebuilt-html --with-recommended-packages=no --with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,824 easyconfig.py:444 INFO setting config option description: value R is a free software environment for statistical computing and graphics. (type: <type 'str'>) | |
| == 2017-06-23 08:02:39,825 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:39,825 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:39,826 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:39,827 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:39,827 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:39,828 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:39,828 easyconfig.py:467 INFO Validating easyconfig | |
| == 2017-06-23 08:02:39,828 easyconfig.py:472 INFO Checking OS dependencies | |
| == 2017-06-23 08:02:39,828 easyconfig.py:527 INFO OS dependencies ok: [] | |
| == 2017-06-23 08:02:39,829 easyconfig.py:477 INFO Checking skipsteps | |
| == 2017-06-23 08:02:39,829 easyconfig.py:482 INFO Checking build option lists | |
| == 2017-06-23 08:02:39,829 easyconfig.py:485 INFO Checking licenses | |
| == 2017-06-23 08:02:39,918 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:39,919 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:40,014 toolchain.py:598 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2017-06-23 08:02:40,015 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2017-06-23 08:02:40,016 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2017-06-23 08:02:40,016 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2017-06-23 08:02:40,016 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2017-06-23 08:02:40,016 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2017-06-23 08:02:40,017 compiler.py:322 INFO _set_optimal_architecture: using O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic as optarch for x86_64. | |
| == 2017-06-23 08:02:40,023 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:40,027 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:40,032 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:40,033 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib64 was not found | |
| == 2017-06-23 08:02:40,038 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,038 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,038 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,038 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,038 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,038 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,039 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,039 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,039 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,039 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,039 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,039 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,040 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,040 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,040 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,040 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,040 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2017-06-23 08:02:40,040 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2017-06-23 08:02:40,040 environment.py:97 INFO Environment variable CFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,041 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,041 environment.py:97 INFO Environment variable CPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 08:02:40,041 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 08:02:40,041 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2017-06-23 08:02:40,041 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2017-06-23 08:02:40,041 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,041 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,042 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,042 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,042 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,042 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,042 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,042 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,042 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,043 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,043 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,043 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,043 environment.py:97 INFO Environment variable FFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,043 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previously undefined) | |
| == 2017-06-23 08:02:40,043 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 08:02:40,043 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 08:02:40,044 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 08:02:40,044 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 08:02:40,044 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 08:02:40,044 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 08:02:40,044 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
| == 2017-06-23 08:02:40,044 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined) | |
| == 2017-06-23 08:02:40,044 environment.py:97 INFO Environment variable FFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 08:02:40,045 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previously undefined) | |
| == 2017-06-23 08:02:40,045 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 08:02:40,045 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 08:02:40,045 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 08:02:40,045 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2017-06-23 08:02:40,045 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2017-06-23 08:02:40,045 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2017-06-23 08:02:40,046 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,046 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,046 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,046 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,046 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,046 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,047 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,047 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,047 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,047 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,047 environment.py:97 INFO Environment variable LDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 08:02:40,047 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previously undefined) | |
| == 2017-06-23 08:02:40,047 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,048 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,048 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,048 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,048 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2017-06-23 08:02:40,048 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2017-06-23 08:02:40,048 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2017-06-23 08:02:40,048 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,049 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,050 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2017-06-23 08:02:40,050 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2017-06-23 08:02:40,050 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,050 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,050 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,050 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,050 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,051 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,051 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,051 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2017-06-23 08:02:40,051 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2017-06-23 08:02:40,051 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2017-06-23 08:02:40,051 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2017-06-23 08:02:40,051 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2017-06-23 08:02:40,052 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2017-06-23 08:02:40,052 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2017-06-23 08:02:40,052 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2017-06-23 08:02:40,052 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2017-06-23 08:02:40,052 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2017-06-23 08:02:40,052 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2017-06-23 08:02:40,052 environment.py:97 INFO Environment variable MPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previously undefined) | |
| == 2017-06-23 08:02:40,053 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previously undefined) | |
| == 2017-06-23 08:02:40,053 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previously undefined) | |
| == 2017-06-23 08:02:40,053 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previously undefined) | |
| == 2017-06-23 08:02:40,053 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previously undefined) | |
| == 2017-06-23 08:02:40,053 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previously undefined) | |
| == 2017-06-23 08:02:40,053 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2017-06-23 08:02:40,053 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2017-06-23 08:02:40,054 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2017-06-23 08:02:40,054 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2017-06-23 08:02:40,054 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2017-06-23 08:02:40,054 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2017-06-23 08:02:40,054 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,054 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,054 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,055 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,055 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,055 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2017-06-23 08:02:40,055 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previously undefined) | |
| == 2017-06-23 08:02:40,055 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previously undefined) | |
| == 2017-06-23 08:02:40,055 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined) | |
| == 2017-06-23 08:02:40,055 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined) | |
| == 2017-06-23 08:02:40,056 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,056 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined) | |
| == 2017-06-23 08:02:40,056 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,056 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined) | |
| == 2017-06-23 08:02:40,056 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2017-06-23 08:02:40,056 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2017-06-23 08:02:40,056 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,057 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined) | |
| == 2017-06-23 08:02:40,057 run.py:162 INFO running cmd: R RHOME | |
| == 2017-06-23 08:02:40,068 run.py:454 INFO cmd "R RHOME" exited with exitcode 0 and output: | |
| /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R | |
| == 2017-06-23 08:02:40,068 run.py:162 INFO running cmd: R -q --no-save | |
| == 2017-06-23 08:02:41,558 run.py:454 INFO cmd "R -q --no-save" exited with exitcode 0 and output: | |
| > | |
| > options(repos=c(CRAN="http://www.freestatistics.org/cran")) | |
| > | |
| > | |
| > install.packages("base", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/library", dependencies = FALSE ) | |
| Warning messages: | |
| 1: package ‘base’ is not available (for R version 3.4.0) | |
| 2: package ‘base’ is a base package, and should not be updated | |
| > | |
| > | |
| == 2017-06-23 08:02:41,560 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:41,560 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:41,561 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') | |
| == 2017-06-23 08:02:41,561 filetools.py:306 WARNING Could not find command 'lmod' (with permissions to read/execute it) in $PATH (['/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/bin', '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/bin', '/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/bin', '/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/bin', '/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/bin', '/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/bin', '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/bin', '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/bin', '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/bin', '/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/bin', '/apps/prod/easybuild/software/GCC/4.9.2/bin', '/apps/prod/easybuild/software/EasyBuild/3.2.1/bin', '/usr/local/bin', '/usr/bin', '/usr/local/sbin', '/usr/sbin', '/home/ec2-user/.local/bin', '/home/ec2-user/bin']) | |
| == 2017-06-23 08:02:41,561 filetools.py:298 INFO Command /usr/share/lmod/lmod/libexec/lmod found at /usr/share/lmod/lmod/libexec/lmod | |
| == 2017-06-23 08:02:41,561 modules.py:254 INFO Full path for module command is /usr/share/lmod/lmod/libexec/lmod, so using it | |
| == 2017-06-23 08:02:41,562 modules.py:384 INFO Prepended list of module paths with path used by EasyBuild: /apps/prod/easybuild/modules/all | |
| == 2017-06-23 08:02:41,655 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:41,655 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:41,749 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:41,749 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:41,843 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:41,843 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:41,937 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:41,937 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:41,938 modules.py:401 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /apps/prod/easybuild/modules/all:/tmp/eb-N02tlq/tmpgsEd9U/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2017-06-23 08:02:41,938 easyconfig.py:283 INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2017-06-23 08:02:41,939 easyconfig.py:1125 INFO Successfully obtained EB_R class instance from easybuild.easyblocks.r | |
| == 2017-06-23 08:02:41,939 easyconfig.py:1141 INFO Successfully obtained class 'EB_R' for easyblock 'None' (software name 'R') | |
| == 2017-06-23 08:02:41,941 easyconfig.py:411 INFO Parsing easyconfig file None with rawcontent: name = 'R' | |
| version = "3.4.0" | |
| versionsuffix = '-bare.perftest2' | |
| homepage = 'http://www.r-project.org/' | |
| description = """R is a free software environment for statistical computing and graphics.""" | |
| toolchain = {'name': 'foss', 'version': '2015a'} | |
| toolchainopts = {"optarch": True, "defaultopt": True, "unroll": True} | |
| sources = [SOURCE_TAR_GZ] | |
| source_urls = ['https://cran.r-project.org/src/base/R-%(version_major)s'] | |
| preconfigopts = '' | |
| preconfigopts += 'BLAS_LIBS="$LIBBLAS" ' | |
| preconfigopts += 'LAPACK_LIBS="$LIBLAPACK" ' | |
| preconfigopts += 'CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" ' | |
| preconfigopts += 'LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" ' | |
| configopts = "" | |
| configopts += "--with-lapack " | |
| configopts += "--with-blas " | |
| configopts += "--with-pic --enable-threads --enable-R-shlib " | |
| configopts += "--enable-prebuilt-html --with-recommended-packages=no " | |
| configopts += "--with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no " | |
| dependencies = [ | |
| # ('BItexmf', '3.4.0'), | |
| ('PCRE', '8.36'), | |
| ('XZ', '5.2.0', '', ('GCC', '4.9.2')), | |
| ('zlib', '1.2.8'), | |
| ('bzip2', '1.0.6'), | |
| ('libreadline', '6.3'), | |
| ('ncurses', '5.9'), | |
| # ('LibTIFF', '4.0.3'), # capabilities("tiff") | |
| # ('libpng', '1.6.17'), # capabilities("png") | |
| # ('libjpeg-turbo', '1.4.0', '', ('GCC', '4.9.2')), # capabilities("jpeg") | |
| ('cURL', '7.40.0'), # capabilities("libcurl") | |
| # ('cairo', '1.14.2'), # capabilities("cairo") | |
| # ('Tk','8.6.3','-no-X11'), # capabilities("tcltk") | |
| # ('Tcl','8.6.3'), # capabilities("tcltk") | |
| # ('Java', '1.8.0_131', '', True), # Java bindings are built if Java is found, might as well provide it | |
| ] | |
| modextravars = { | |
| "R_HOME": "%(installdir)s/lib64/R", | |
| "R_DOC_DIR": "%(installdir)s/lib64/R/doc", | |
| "R_SHARE_DIR": "%(installdir)s/lib64/R/share", | |
| "R_INCLUDE_DIR": "%(installdir)s/lib64/R/include", | |
| } | |
| exts_list = [ | |
| # default libraries, only here to sanity check their presence | |
| 'base', | |
| 'datasets', | |
| 'graphics', | |
| 'grDevices', | |
| 'grid', | |
| 'methods', | |
| 'splines', | |
| 'stats', | |
| 'stats4', | |
| 'tools', | |
| 'utils', | |
| ] | |
| moduleclass = 'lang' | |
| == 2017-06-23 08:02:41,941 parser.py:138 INFO Type checking of easyconfig parameter values passed! | |
| == 2017-06-23 08:02:41,942 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:41,942 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,942 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,942 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,942 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,943 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,943 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,943 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,943 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,943 easyconfig.py:444 INFO setting config option modextravars: value {'R_SHARE_DIR': '%(installdir)s/lib64/R/share', 'R_DOC_DIR': '%(installdir)s/lib64/R/doc', 'R_HOME': '%(installdir)s/lib64/R', 'R_INCLUDE_DIR': '%(installdir)s/lib64/R/include'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:41,943 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:41,944 easyconfig.py:444 INFO setting config option name: value R (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,944 easyconfig.py:444 INFO setting config option exts_list: value ['base', 'datasets', 'graphics', 'grDevices', 'grid', 'methods', 'splines', 'stats', 'stats4', 'tools', 'utils'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:41,944 easyconfig.py:444 INFO setting config option moduleclass: value lang (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,944 easyconfig.py:444 INFO setting config option preconfigopts: value BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK" CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,944 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,945 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,945 easyconfig.py:444 INFO setting config option sources: value ['%(name)s-%(version)s.tar.gz'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:41,945 easyconfig.py:444 INFO setting config option versionsuffix: value -bare.perftest2 (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,945 easyconfig.py:444 INFO setting config option version: value 3.4.0 (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,946 easyconfig.py:444 INFO setting config option dependencies: value [{'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '4.9.2', 'name': 'GCC'}, 'name': 'XZ', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.2.0', 'toolchain_inherited': False, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}] (type: <type 'list'>) | |
| == 2017-06-23 08:02:41,946 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,946 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:41,947 easyconfig.py:444 INFO setting config option source_urls: value ['https://cran.r-project.org/src/base/R-%(version_major)s'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:41,947 easyconfig.py:444 INFO setting config option toolchainopts: value {'optarch': True, 'unroll': True, 'defaultopt': True} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:41,947 easyconfig.py:444 INFO setting config option homepage: value http://www.r-project.org/ (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,947 easyconfig.py:444 INFO setting config option configopts: value --with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --enable-prebuilt-html --with-recommended-packages=no --with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,947 easyconfig.py:444 INFO setting config option description: value R is a free software environment for statistical computing and graphics. (type: <type 'str'>) | |
| == 2017-06-23 08:02:41,948 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:41,949 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:41,949 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:41,950 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:41,951 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:41,951 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:41,952 easyconfig.py:467 INFO Validating easyconfig | |
| == 2017-06-23 08:02:41,952 easyconfig.py:472 INFO Checking OS dependencies | |
| == 2017-06-23 08:02:41,952 easyconfig.py:527 INFO OS dependencies ok: [] | |
| == 2017-06-23 08:02:41,952 easyconfig.py:477 INFO Checking skipsteps | |
| == 2017-06-23 08:02:41,952 easyconfig.py:482 INFO Checking build option lists | |
| == 2017-06-23 08:02:41,952 easyconfig.py:485 INFO Checking licenses | |
| == 2017-06-23 08:02:42,043 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:42,043 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:42,046 toolchain.py:598 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2017-06-23 08:02:42,047 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2017-06-23 08:02:42,047 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2017-06-23 08:02:42,047 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2017-06-23 08:02:42,047 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2017-06-23 08:02:42,048 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2017-06-23 08:02:42,048 compiler.py:322 INFO _set_optimal_architecture: using O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic as optarch for x86_64. | |
| == 2017-06-23 08:02:42,054 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:42,059 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:42,063 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:42,065 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib64 was not found | |
| == 2017-06-23 08:02:42,069 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,069 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,069 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,070 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,070 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,070 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,070 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,070 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,070 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,070 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,071 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,071 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,071 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,071 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,071 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,071 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,071 environment.py:97 INFO Environment variable CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:42,072 environment.py:97 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:42,072 environment.py:97 INFO Environment variable CFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,072 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,072 environment.py:97 INFO Environment variable CPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '-I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:42,072 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '-I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:42,072 environment.py:97 INFO Environment variable CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:42,073 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:42,073 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,073 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,073 environment.py:97 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,073 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,073 environment.py:97 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,073 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,074 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,074 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,074 environment.py:97 INFO Environment variable FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,074 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,074 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,074 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,074 environment.py:97 INFO Environment variable FFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,075 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:42,075 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:42,075 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:42,075 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:42,075 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:42,075 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:42,075 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:42,076 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previous value: '-fftw3 -pthread') | |
| == 2017-06-23 08:02:42,076 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previous value: '-fftw3 -pthread') | |
| == 2017-06-23 08:02:42,076 environment.py:97 INFO Environment variable FFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:42,076 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:42,076 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:42,076 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:42,077 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:42,077 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:42,077 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') | |
| == 2017-06-23 08:02:42,077 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') | |
| == 2017-06-23 08:02:42,077 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') | |
| == 2017-06-23 08:02:42,077 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') | |
| == 2017-06-23 08:02:42,077 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,078 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,078 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,078 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,078 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,078 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,078 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,079 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,079 environment.py:97 INFO Environment variable LDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '-L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:42,079 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '-L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:42,079 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,079 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,079 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,080 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,080 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') | |
| == 2017-06-23 08:02:42,080 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') | |
| == 2017-06-23 08:02:42,080 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') | |
| == 2017-06-23 08:02:42,080 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') | |
| == 2017-06-23 08:02:42,080 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,081 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,081 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,081 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,081 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,081 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,081 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,081 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,082 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') | |
| == 2017-06-23 08:02:42,082 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') | |
| == 2017-06-23 08:02:42,082 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,082 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran') | |
| == 2017-06-23 08:02:42,082 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran') | |
| == 2017-06-23 08:02:42,082 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran') | |
| == 2017-06-23 08:02:42,082 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:42,083 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:42,083 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:42,083 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:42,083 environment.py:97 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') | |
| == 2017-06-23 08:02:42,083 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') | |
| == 2017-06-23 08:02:42,083 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') | |
| == 2017-06-23 08:02:42,083 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') | |
| == 2017-06-23 08:02:42,084 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:42,084 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:42,084 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:42,084 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:42,084 environment.py:97 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:42,084 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:42,084 environment.py:97 INFO Environment variable MPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include') | |
| == 2017-06-23 08:02:42,085 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include') | |
| == 2017-06-23 08:02:42,085 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib') | |
| == 2017-06-23 08:02:42,085 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib') | |
| == 2017-06-23 08:02:42,085 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so') | |
| == 2017-06-23 08:02:42,085 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so') | |
| == 2017-06-23 08:02:42,085 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') | |
| == 2017-06-23 08:02:42,086 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') | |
| == 2017-06-23 08:02:42,086 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:42,086 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:42,086 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:42,086 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:42,086 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,086 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,087 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,087 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,087 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,087 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:42,087 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic') | |
| == 2017-06-23 08:02:42,087 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic') | |
| == 2017-06-23 08:02:42,087 environment.py:97 INFO Environment variable PRECFLAGS set to (previous value: '') | |
| == 2017-06-23 08:02:42,088 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previous value: '') | |
| == 2017-06-23 08:02:42,088 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,088 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:42,088 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,088 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:42,088 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a') | |
| == 2017-06-23 08:02:42,088 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a') | |
| == 2017-06-23 08:02:42,089 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,089 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:42,089 run.py:162 INFO running cmd: R RHOME | |
| == 2017-06-23 08:02:42,100 run.py:454 INFO cmd "R RHOME" exited with exitcode 0 and output: | |
| /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R | |
| == 2017-06-23 08:02:42,101 run.py:162 INFO running cmd: R -q --no-save | |
| == 2017-06-23 08:02:43,488 run.py:454 INFO cmd "R -q --no-save" exited with exitcode 0 and output: | |
| > | |
| > options(repos=c(CRAN="http://www.freestatistics.org/cran")) | |
| > | |
| > | |
| > install.packages("datasets", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/library", dependencies = FALSE ) | |
| Warning messages: | |
| 1: package ‘datasets’ is not available (for R version 3.4.0) | |
| 2: package ‘datasets’ is a base package, and should not be updated | |
| > | |
| > | |
| == 2017-06-23 08:02:43,489 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:43,490 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:43,490 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') | |
| == 2017-06-23 08:02:43,490 filetools.py:306 WARNING Could not find command 'lmod' (with permissions to read/execute it) in $PATH (['/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/bin', '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/bin', '/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/bin', '/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/bin', '/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/bin', '/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/bin', '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/bin', '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/bin', '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/bin', '/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/bin', '/apps/prod/easybuild/software/GCC/4.9.2/bin', '/apps/prod/easybuild/software/EasyBuild/3.2.1/bin', '/usr/local/bin', '/usr/bin', '/usr/local/sbin', '/usr/sbin', '/home/ec2-user/.local/bin', '/home/ec2-user/bin']) | |
| == 2017-06-23 08:02:43,490 filetools.py:298 INFO Command /usr/share/lmod/lmod/libexec/lmod found at /usr/share/lmod/lmod/libexec/lmod | |
| == 2017-06-23 08:02:43,490 modules.py:254 INFO Full path for module command is /usr/share/lmod/lmod/libexec/lmod, so using it | |
| == 2017-06-23 08:02:43,491 modules.py:384 INFO Prepended list of module paths with path used by EasyBuild: /apps/prod/easybuild/modules/all | |
| == 2017-06-23 08:02:43,584 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:43,585 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:43,679 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:43,680 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:43,773 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:43,774 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:43,868 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:43,868 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:43,869 modules.py:401 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /apps/prod/easybuild/modules/all:/tmp/eb-N02tlq/tmpgsEd9U/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2017-06-23 08:02:43,869 easyconfig.py:283 INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2017-06-23 08:02:43,870 easyconfig.py:1125 INFO Successfully obtained EB_R class instance from easybuild.easyblocks.r | |
| == 2017-06-23 08:02:43,870 easyconfig.py:1141 INFO Successfully obtained class 'EB_R' for easyblock 'None' (software name 'R') | |
| == 2017-06-23 08:02:43,872 easyconfig.py:411 INFO Parsing easyconfig file None with rawcontent: name = 'R' | |
| version = "3.4.0" | |
| versionsuffix = '-bare.perftest2' | |
| homepage = 'http://www.r-project.org/' | |
| description = """R is a free software environment for statistical computing and graphics.""" | |
| toolchain = {'name': 'foss', 'version': '2015a'} | |
| toolchainopts = {"optarch": True, "defaultopt": True, "unroll": True} | |
| sources = [SOURCE_TAR_GZ] | |
| source_urls = ['https://cran.r-project.org/src/base/R-%(version_major)s'] | |
| preconfigopts = '' | |
| preconfigopts += 'BLAS_LIBS="$LIBBLAS" ' | |
| preconfigopts += 'LAPACK_LIBS="$LIBLAPACK" ' | |
| preconfigopts += 'CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" ' | |
| preconfigopts += 'LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" ' | |
| configopts = "" | |
| configopts += "--with-lapack " | |
| configopts += "--with-blas " | |
| configopts += "--with-pic --enable-threads --enable-R-shlib " | |
| configopts += "--enable-prebuilt-html --with-recommended-packages=no " | |
| configopts += "--with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no " | |
| dependencies = [ | |
| # ('BItexmf', '3.4.0'), | |
| ('PCRE', '8.36'), | |
| ('XZ', '5.2.0', '', ('GCC', '4.9.2')), | |
| ('zlib', '1.2.8'), | |
| ('bzip2', '1.0.6'), | |
| ('libreadline', '6.3'), | |
| ('ncurses', '5.9'), | |
| # ('LibTIFF', '4.0.3'), # capabilities("tiff") | |
| # ('libpng', '1.6.17'), # capabilities("png") | |
| # ('libjpeg-turbo', '1.4.0', '', ('GCC', '4.9.2')), # capabilities("jpeg") | |
| ('cURL', '7.40.0'), # capabilities("libcurl") | |
| # ('cairo', '1.14.2'), # capabilities("cairo") | |
| # ('Tk','8.6.3','-no-X11'), # capabilities("tcltk") | |
| # ('Tcl','8.6.3'), # capabilities("tcltk") | |
| # ('Java', '1.8.0_131', '', True), # Java bindings are built if Java is found, might as well provide it | |
| ] | |
| modextravars = { | |
| "R_HOME": "%(installdir)s/lib64/R", | |
| "R_DOC_DIR": "%(installdir)s/lib64/R/doc", | |
| "R_SHARE_DIR": "%(installdir)s/lib64/R/share", | |
| "R_INCLUDE_DIR": "%(installdir)s/lib64/R/include", | |
| } | |
| exts_list = [ | |
| # default libraries, only here to sanity check their presence | |
| 'base', | |
| 'datasets', | |
| 'graphics', | |
| 'grDevices', | |
| 'grid', | |
| 'methods', | |
| 'splines', | |
| 'stats', | |
| 'stats4', | |
| 'tools', | |
| 'utils', | |
| ] | |
| moduleclass = 'lang' | |
| == 2017-06-23 08:02:43,873 parser.py:138 INFO Type checking of easyconfig parameter values passed! | |
| == 2017-06-23 08:02:43,873 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:43,873 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,873 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,874 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,874 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,874 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,874 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,874 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,874 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,875 easyconfig.py:444 INFO setting config option modextravars: value {'R_SHARE_DIR': '%(installdir)s/lib64/R/share', 'R_DOC_DIR': '%(installdir)s/lib64/R/doc', 'R_HOME': '%(installdir)s/lib64/R', 'R_INCLUDE_DIR': '%(installdir)s/lib64/R/include'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:43,875 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:43,875 easyconfig.py:444 INFO setting config option name: value R (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,875 easyconfig.py:444 INFO setting config option exts_list: value ['base', 'datasets', 'graphics', 'grDevices', 'grid', 'methods', 'splines', 'stats', 'stats4', 'tools', 'utils'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:43,875 easyconfig.py:444 INFO setting config option moduleclass: value lang (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,875 easyconfig.py:444 INFO setting config option preconfigopts: value BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK" CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,876 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,876 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,876 easyconfig.py:444 INFO setting config option sources: value ['%(name)s-%(version)s.tar.gz'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:43,876 easyconfig.py:444 INFO setting config option versionsuffix: value -bare.perftest2 (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,876 easyconfig.py:444 INFO setting config option version: value 3.4.0 (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,877 easyconfig.py:444 INFO setting config option dependencies: value [{'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '4.9.2', 'name': 'GCC'}, 'name': 'XZ', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.2.0', 'toolchain_inherited': False, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}] (type: <type 'list'>) | |
| == 2017-06-23 08:02:43,877 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,878 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:43,878 easyconfig.py:444 INFO setting config option source_urls: value ['https://cran.r-project.org/src/base/R-%(version_major)s'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:43,878 easyconfig.py:444 INFO setting config option toolchainopts: value {'optarch': True, 'unroll': True, 'defaultopt': True} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:43,878 easyconfig.py:444 INFO setting config option homepage: value http://www.r-project.org/ (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,878 easyconfig.py:444 INFO setting config option configopts: value --with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --enable-prebuilt-html --with-recommended-packages=no --with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,878 easyconfig.py:444 INFO setting config option description: value R is a free software environment for statistical computing and graphics. (type: <type 'str'>) | |
| == 2017-06-23 08:02:43,879 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:43,880 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:43,881 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:43,881 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:43,882 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:43,882 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:43,883 easyconfig.py:467 INFO Validating easyconfig | |
| == 2017-06-23 08:02:43,883 easyconfig.py:472 INFO Checking OS dependencies | |
| == 2017-06-23 08:02:43,883 easyconfig.py:527 INFO OS dependencies ok: [] | |
| == 2017-06-23 08:02:43,883 easyconfig.py:477 INFO Checking skipsteps | |
| == 2017-06-23 08:02:43,883 easyconfig.py:482 INFO Checking build option lists | |
| == 2017-06-23 08:02:43,883 easyconfig.py:485 INFO Checking licenses | |
| == 2017-06-23 08:02:43,973 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:43,974 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:43,976 toolchain.py:598 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2017-06-23 08:02:43,977 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2017-06-23 08:02:43,978 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2017-06-23 08:02:43,978 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2017-06-23 08:02:43,978 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2017-06-23 08:02:43,978 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2017-06-23 08:02:43,979 compiler.py:322 INFO _set_optimal_architecture: using O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic as optarch for x86_64. | |
| == 2017-06-23 08:02:43,985 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:43,990 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:43,994 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:43,995 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib64 was not found | |
| == 2017-06-23 08:02:44,000 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,000 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,000 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,000 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,000 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,000 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,001 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,001 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,001 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,001 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,001 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,001 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,001 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,002 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,002 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,002 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,002 environment.py:97 INFO Environment variable CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:44,002 environment.py:97 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:44,002 environment.py:97 INFO Environment variable CFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,002 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,003 environment.py:97 INFO Environment variable CPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '-I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:44,003 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '-I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:44,003 environment.py:97 INFO Environment variable CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:44,003 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:44,003 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,003 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,004 environment.py:97 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,004 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,004 environment.py:97 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,004 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,004 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,004 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,004 environment.py:97 INFO Environment variable FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,005 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,005 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,005 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,005 environment.py:97 INFO Environment variable FFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,005 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:44,005 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:44,005 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:44,006 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:44,006 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:44,006 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:44,006 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:44,006 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previous value: '-fftw3 -pthread') | |
| == 2017-06-23 08:02:44,006 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previous value: '-fftw3 -pthread') | |
| == 2017-06-23 08:02:44,006 environment.py:97 INFO Environment variable FFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:44,007 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:44,007 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:44,007 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:44,007 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:44,007 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:44,007 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') | |
| == 2017-06-23 08:02:44,008 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') | |
| == 2017-06-23 08:02:44,008 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') | |
| == 2017-06-23 08:02:44,008 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') | |
| == 2017-06-23 08:02:44,008 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,008 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,008 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,008 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,009 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,009 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,009 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,009 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,009 environment.py:97 INFO Environment variable LDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '-L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:44,009 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '-L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:44,009 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,010 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,010 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,010 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,010 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') | |
| == 2017-06-23 08:02:44,010 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') | |
| == 2017-06-23 08:02:44,010 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') | |
| == 2017-06-23 08:02:44,010 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') | |
| == 2017-06-23 08:02:44,011 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,011 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,011 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,011 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,011 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,011 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,011 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,012 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,012 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') | |
| == 2017-06-23 08:02:44,012 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') | |
| == 2017-06-23 08:02:44,012 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,012 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran') | |
| == 2017-06-23 08:02:44,012 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran') | |
| == 2017-06-23 08:02:44,012 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran') | |
| == 2017-06-23 08:02:44,013 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:44,013 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:44,013 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:44,013 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:44,013 environment.py:97 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') | |
| == 2017-06-23 08:02:44,013 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') | |
| == 2017-06-23 08:02:44,013 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') | |
| == 2017-06-23 08:02:44,014 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') | |
| == 2017-06-23 08:02:44,014 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:44,014 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:44,014 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:44,014 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:44,014 environment.py:97 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:44,015 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:44,015 environment.py:97 INFO Environment variable MPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include') | |
| == 2017-06-23 08:02:44,015 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include') | |
| == 2017-06-23 08:02:44,015 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib') | |
| == 2017-06-23 08:02:44,015 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib') | |
| == 2017-06-23 08:02:44,015 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:44,016 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,017 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,017 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,017 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,017 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,017 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:44,017 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic') | |
| == 2017-06-23 08:02:44,018 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic') | |
| == 2017-06-23 08:02:44,018 environment.py:97 INFO Environment variable PRECFLAGS set to (previous value: '') | |
| == 2017-06-23 08:02:44,018 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previous value: '') | |
| == 2017-06-23 08:02:44,018 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,018 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:44,018 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,018 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:44,019 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a') | |
| == 2017-06-23 08:02:44,019 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a') | |
| == 2017-06-23 08:02:44,019 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,019 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:44,019 run.py:162 INFO running cmd: R RHOME | |
| == 2017-06-23 08:02:44,030 run.py:454 INFO cmd "R RHOME" exited with exitcode 0 and output: | |
| /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R | |
| == 2017-06-23 08:02:44,031 run.py:162 INFO running cmd: R -q --no-save | |
| == 2017-06-23 08:02:45,402 run.py:454 INFO cmd "R -q --no-save" exited with exitcode 0 and output: | |
| > | |
| > options(repos=c(CRAN="http://www.freestatistics.org/cran")) | |
| > | |
| > | |
| > install.packages("graphics", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/library", dependencies = FALSE ) | |
| Warning messages: | |
| 1: package ‘graphics’ is not available (for R version 3.4.0) | |
| 2: package ‘graphics’ is a base package, and should not be updated | |
| > | |
| > | |
| == 2017-06-23 08:02:45,404 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:45,404 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:45,404 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') | |
| == 2017-06-23 08:02:45,404 filetools.py:306 WARNING Could not find command 'lmod' (with permissions to read/execute it) in $PATH (['/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/bin', '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/bin', '/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/bin', '/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/bin', '/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/bin', '/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/bin', '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/bin', '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/bin', '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/bin', '/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/bin', '/apps/prod/easybuild/software/GCC/4.9.2/bin', '/apps/prod/easybuild/software/EasyBuild/3.2.1/bin', '/usr/local/bin', '/usr/bin', '/usr/local/sbin', '/usr/sbin', '/home/ec2-user/.local/bin', '/home/ec2-user/bin']) | |
| == 2017-06-23 08:02:45,405 filetools.py:298 INFO Command /usr/share/lmod/lmod/libexec/lmod found at /usr/share/lmod/lmod/libexec/lmod | |
| == 2017-06-23 08:02:45,405 modules.py:254 INFO Full path for module command is /usr/share/lmod/lmod/libexec/lmod, so using it | |
| == 2017-06-23 08:02:45,405 modules.py:384 INFO Prepended list of module paths with path used by EasyBuild: /apps/prod/easybuild/modules/all | |
| == 2017-06-23 08:02:45,499 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:45,499 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:45,594 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:45,594 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:45,688 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:45,689 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:45,783 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:45,784 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:45,784 modules.py:401 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /apps/prod/easybuild/modules/all:/tmp/eb-N02tlq/tmpgsEd9U/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2017-06-23 08:02:45,784 easyconfig.py:283 INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2017-06-23 08:02:45,785 easyconfig.py:1125 INFO Successfully obtained EB_R class instance from easybuild.easyblocks.r | |
| == 2017-06-23 08:02:45,786 easyconfig.py:1141 INFO Successfully obtained class 'EB_R' for easyblock 'None' (software name 'R') | |
| == 2017-06-23 08:02:45,788 easyconfig.py:411 INFO Parsing easyconfig file None with rawcontent: name = 'R' | |
| version = "3.4.0" | |
| versionsuffix = '-bare.perftest2' | |
| homepage = 'http://www.r-project.org/' | |
| description = """R is a free software environment for statistical computing and graphics.""" | |
| toolchain = {'name': 'foss', 'version': '2015a'} | |
| toolchainopts = {"optarch": True, "defaultopt": True, "unroll": True} | |
| sources = [SOURCE_TAR_GZ] | |
| source_urls = ['https://cran.r-project.org/src/base/R-%(version_major)s'] | |
| preconfigopts = '' | |
| preconfigopts += 'BLAS_LIBS="$LIBBLAS" ' | |
| preconfigopts += 'LAPACK_LIBS="$LIBLAPACK" ' | |
| preconfigopts += 'CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" ' | |
| preconfigopts += 'LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" ' | |
| configopts = "" | |
| configopts += "--with-lapack " | |
| configopts += "--with-blas " | |
| configopts += "--with-pic --enable-threads --enable-R-shlib " | |
| configopts += "--enable-prebuilt-html --with-recommended-packages=no " | |
| configopts += "--with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no " | |
| dependencies = [ | |
| # ('BItexmf', '3.4.0'), | |
| ('PCRE', '8.36'), | |
| ('XZ', '5.2.0', '', ('GCC', '4.9.2')), | |
| ('zlib', '1.2.8'), | |
| ('bzip2', '1.0.6'), | |
| ('libreadline', '6.3'), | |
| ('ncurses', '5.9'), | |
| # ('LibTIFF', '4.0.3'), # capabilities("tiff") | |
| # ('libpng', '1.6.17'), # capabilities("png") | |
| # ('libjpeg-turbo', '1.4.0', '', ('GCC', '4.9.2')), # capabilities("jpeg") | |
| ('cURL', '7.40.0'), # capabilities("libcurl") | |
| # ('cairo', '1.14.2'), # capabilities("cairo") | |
| # ('Tk','8.6.3','-no-X11'), # capabilities("tcltk") | |
| # ('Tcl','8.6.3'), # capabilities("tcltk") | |
| # ('Java', '1.8.0_131', '', True), # Java bindings are built if Java is found, might as well provide it | |
| ] | |
| modextravars = { | |
| "R_HOME": "%(installdir)s/lib64/R", | |
| "R_DOC_DIR": "%(installdir)s/lib64/R/doc", | |
| "R_SHARE_DIR": "%(installdir)s/lib64/R/share", | |
| "R_INCLUDE_DIR": "%(installdir)s/lib64/R/include", | |
| } | |
| exts_list = [ | |
| # default libraries, only here to sanity check their presence | |
| 'base', | |
| 'datasets', | |
| 'graphics', | |
| 'grDevices', | |
| 'grid', | |
| 'methods', | |
| 'splines', | |
| 'stats', | |
| 'stats4', | |
| 'tools', | |
| 'utils', | |
| ] | |
| moduleclass = 'lang' | |
| == 2017-06-23 08:02:45,788 parser.py:138 INFO Type checking of easyconfig parameter values passed! | |
| == 2017-06-23 08:02:45,788 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:45,789 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,789 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,789 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,789 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,789 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,789 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,790 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,790 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,790 easyconfig.py:444 INFO setting config option modextravars: value {'R_SHARE_DIR': '%(installdir)s/lib64/R/share', 'R_DOC_DIR': '%(installdir)s/lib64/R/doc', 'R_HOME': '%(installdir)s/lib64/R', 'R_INCLUDE_DIR': '%(installdir)s/lib64/R/include'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:45,790 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:45,790 easyconfig.py:444 INFO setting config option name: value R (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,790 easyconfig.py:444 INFO setting config option exts_list: value ['base', 'datasets', 'graphics', 'grDevices', 'grid', 'methods', 'splines', 'stats', 'stats4', 'tools', 'utils'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:45,791 easyconfig.py:444 INFO setting config option moduleclass: value lang (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,791 easyconfig.py:444 INFO setting config option preconfigopts: value BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK" CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,791 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,791 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,791 easyconfig.py:444 INFO setting config option sources: value ['%(name)s-%(version)s.tar.gz'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:45,791 easyconfig.py:444 INFO setting config option versionsuffix: value -bare.perftest2 (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,791 easyconfig.py:444 INFO setting config option version: value 3.4.0 (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,792 easyconfig.py:444 INFO setting config option dependencies: value [{'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '4.9.2', 'name': 'GCC'}, 'name': 'XZ', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.2.0', 'toolchain_inherited': False, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}] (type: <type 'list'>) | |
| == 2017-06-23 08:02:45,793 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,793 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:45,793 easyconfig.py:444 INFO setting config option source_urls: value ['https://cran.r-project.org/src/base/R-%(version_major)s'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:45,793 easyconfig.py:444 INFO setting config option toolchainopts: value {'optarch': True, 'unroll': True, 'defaultopt': True} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:45,793 easyconfig.py:444 INFO setting config option homepage: value http://www.r-project.org/ (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,794 easyconfig.py:444 INFO setting config option configopts: value --with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --enable-prebuilt-html --with-recommended-packages=no --with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,794 easyconfig.py:444 INFO setting config option description: value R is a free software environment for statistical computing and graphics. (type: <type 'str'>) | |
| == 2017-06-23 08:02:45,795 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:45,795 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:45,796 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:45,796 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:45,797 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:45,798 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:45,798 easyconfig.py:467 INFO Validating easyconfig | |
| == 2017-06-23 08:02:45,798 easyconfig.py:472 INFO Checking OS dependencies | |
| == 2017-06-23 08:02:45,798 easyconfig.py:527 INFO OS dependencies ok: [] | |
| == 2017-06-23 08:02:45,798 easyconfig.py:477 INFO Checking skipsteps | |
| == 2017-06-23 08:02:45,799 easyconfig.py:482 INFO Checking build option lists | |
| == 2017-06-23 08:02:45,799 easyconfig.py:485 INFO Checking licenses | |
| == 2017-06-23 08:02:45,889 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:45,889 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:45,892 toolchain.py:598 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2017-06-23 08:02:45,893 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2017-06-23 08:02:45,893 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2017-06-23 08:02:45,893 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2017-06-23 08:02:45,894 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2017-06-23 08:02:45,894 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2017-06-23 08:02:45,894 compiler.py:322 INFO _set_optimal_architecture: using O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic as optarch for x86_64. | |
| == 2017-06-23 08:02:45,900 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:45,905 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:45,909 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib64 was not found | |
| == 2017-06-23 08:02:45,911 variables.py:200 WARNING flags_for_subdirs: directory /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib64 was not found | |
| == 2017-06-23 08:02:45,915 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,915 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,916 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,916 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,916 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,916 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,916 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,916 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,916 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,917 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,917 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,917 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,917 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,917 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,917 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,917 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,918 environment.py:97 INFO Environment variable CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:45,918 environment.py:97 INFO Environment variable EBVARCC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:45,918 environment.py:97 INFO Environment variable CFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,918 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,918 environment.py:97 INFO Environment variable CPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '-I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:45,918 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '-I/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:45,918 environment.py:97 INFO Environment variable CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:45,919 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:45,919 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,919 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,919 environment.py:97 INFO Environment variable F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,919 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,919 environment.py:97 INFO Environment variable F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,920 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,920 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,920 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,920 environment.py:97 INFO Environment variable FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,920 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,920 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,920 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,921 environment.py:97 INFO Environment variable FFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,921 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -funroll-loops') | |
| == 2017-06-23 08:02:45,921 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:45,921 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:45,921 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:45,921 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:45,921 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:45,922 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:45,922 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previous value: '-fftw3 -pthread') | |
| == 2017-06-23 08:02:45,922 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previous value: '-fftw3 -pthread') | |
| == 2017-06-23 08:02:45,922 environment.py:97 INFO Environment variable FFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:45,922 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/include') | |
| == 2017-06-23 08:02:45,922 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:45,922 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:45,923 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:45,923 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previous value: 'libfftw3.a') | |
| == 2017-06-23 08:02:45,923 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') | |
| == 2017-06-23 08:02:45,923 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previous value: 'libfftw3.a,libpthread.a') | |
| == 2017-06-23 08:02:45,923 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previous value: '-lgfortran') | |
| == 2017-06-23 08:02:45,923 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previous value: '-lgfortran') | |
| == 2017-06-23 08:02:45,923 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,924 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,924 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,924 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,924 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,924 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,924 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,925 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previous value: 'libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,925 environment.py:97 INFO Environment variable LDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '-L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:45,925 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib (previous value: '-L/apps/prod/easybuild/software/GCC/4.9.2/lib64 -L/apps/prod/easybuild/software/GCC/4.9.2/lib -L/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib') | |
| == 2017-06-23 08:02:45,925 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,925 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,925 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,925 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previous value: '-lfftw3') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previous value: '-lfftw3') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previous value: '-lfftw3 -lpthread') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,926 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,927 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,927 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,927 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,927 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previous value: '-lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,927 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previous value: '-lm -lpthread') | |
| == 2017-06-23 08:02:45,927 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previous value: '-lm -lpthread') | |
| == 2017-06-23 08:02:45,928 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,928 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previous value: '-lscalapack -lopenblas -lgfortran') | |
| == 2017-06-23 08:02:45,928 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran') | |
| == 2017-06-23 08:02:45,928 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previous value: '-lscalapack -lopenblas -lpthread -lgfortran') | |
| == 2017-06-23 08:02:45,928 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:45,928 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:45,928 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:45,929 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previous value: '-lscalapack -lgfortran') | |
| == 2017-06-23 08:02:45,929 environment.py:97 INFO Environment variable MPICC set to mpicc (previous value: 'mpicc') | |
| == 2017-06-23 08:02:45,929 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previous value: 'mpicc') | |
| == 2017-06-23 08:02:45,929 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previous value: 'mpicxx') | |
| == 2017-06-23 08:02:45,929 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previous value: 'mpicxx') | |
| == 2017-06-23 08:02:45,929 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:45,929 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:45,930 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:45,930 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:45,930 environment.py:97 INFO Environment variable MPIFC set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:45,930 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previous value: 'mpifort') | |
| == 2017-06-23 08:02:45,930 environment.py:97 INFO Environment variable MPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include') | |
| == 2017-06-23 08:02:45,930 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/include') | |
| == 2017-06-23 08:02:45,930 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib') | |
| == 2017-06-23 08:02:45,931 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib') | |
| == 2017-06-23 08:02:45,931 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so') | |
| == 2017-06-23 08:02:45,931 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so (previous value: '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib/libmpi.so') | |
| == 2017-06-23 08:02:45,931 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previous value: '') | |
| == 2017-06-23 08:02:45,931 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previous value: '') | |
| == 2017-06-23 08:02:45,931 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:45,932 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previous value: 'gcc') | |
| == 2017-06-23 08:02:45,932 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:45,932 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previous value: 'g++') | |
| == 2017-06-23 08:02:45,932 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,932 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,932 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,932 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,933 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,933 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previous value: 'gfortran') | |
| == 2017-06-23 08:02:45,933 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic') | |
| == 2017-06-23 08:02:45,933 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic (previous value: '-O2 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic') | |
| == 2017-06-23 08:02:45,933 environment.py:97 INFO Environment variable PRECFLAGS set to (previous value: '') | |
| == 2017-06-23 08:02:45,933 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previous value: '') | |
| == 2017-06-23 08:02:45,933 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,934 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/include') | |
| == 2017-06-23 08:02:45,934 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,934 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previous value: '/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib') | |
| == 2017-06-23 08:02:45,934 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a') | |
| == 2017-06-23 08:02:45,934 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a') | |
| == 2017-06-23 08:02:45,934 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,934 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previous value: 'libscalapack.a,libopenblas.a,libgfortran.a') | |
| == 2017-06-23 08:02:45,935 run.py:162 INFO running cmd: R RHOME | |
| == 2017-06-23 08:02:45,946 run.py:454 INFO cmd "R RHOME" exited with exitcode 0 and output: | |
| /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R | |
| == 2017-06-23 08:02:45,946 run.py:162 INFO running cmd: R -q --no-save | |
| == 2017-06-23 08:02:47,404 run.py:454 INFO cmd "R -q --no-save" exited with exitcode 0 and output: | |
| > | |
| > options(repos=c(CRAN="http://www.freestatistics.org/cran")) | |
| > | |
| > | |
| > install.packages("grDevices", "/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/library", dependencies = FALSE ) | |
| Warning messages: | |
| 1: package ‘grDevices’ is not available (for R version 3.4.0) | |
| 2: package ‘grDevices’ is a base package, and should not be updated | |
| > | |
| > | |
| == 2017-06-23 08:02:47,406 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:47,406 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') | |
| == 2017-06-23 08:02:47,407 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') | |
| == 2017-06-23 08:02:47,407 filetools.py:306 WARNING Could not find command 'lmod' (with permissions to read/execute it) in $PATH (['/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/bin', '/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/bin', '/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/bin', '/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/bin', '/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/bin', '/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/bin', '/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/bin', '/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/bin', '/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/bin', '/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/bin', '/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/bin', '/apps/prod/easybuild/software/GCC/4.9.2/bin', '/apps/prod/easybuild/software/EasyBuild/3.2.1/bin', '/usr/local/bin', '/usr/bin', '/usr/local/sbin', '/usr/sbin', '/home/ec2-user/.local/bin', '/home/ec2-user/bin']) | |
| == 2017-06-23 08:02:47,407 filetools.py:298 INFO Command /usr/share/lmod/lmod/libexec/lmod found at /usr/share/lmod/lmod/libexec/lmod | |
| == 2017-06-23 08:02:47,407 modules.py:254 INFO Full path for module command is /usr/share/lmod/lmod/libexec/lmod, so using it | |
| == 2017-06-23 08:02:47,407 modules.py:384 INFO Prepended list of module paths with path used by EasyBuild: /apps/prod/easybuild/modules/all | |
| == 2017-06-23 08:02:47,501 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:47,501 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:47,596 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:47,596 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:47,691 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:47,691 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:47,786 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib (previous value: '/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/PCRE/8.36-foss-2015a/lib:/apps/prod/easybuild/software/ScaLAPACK/2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/FFTW/3.3.4-gompi-2015a/lib:/apps/prod/easybuild/software/OpenBLAS/0.2.13-GCC-4.9.2-LAPACK-3.5.0/lib:/apps/prod/easybuild/software/OpenMPI/1.8.4-GCC-4.9.2/lib:/apps/prod/easybuild/software/hwloc/1.10.0-GCC-4.9.2/lib:/apps/prod/easybuild/software/numactl/2.0.10-GCC-4.9.2/lib:/apps/prod/easybuild/software/GCC/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2:/apps/prod/easybuild/software/GCC/4.9.2/lib64:/apps/prod/easybuild/software/GCC/4.9.2/lib') | |
| == 2017-06-23 08:02:47,786 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2017-06-23 08:02:47,786 modules.py:401 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /apps/prod/easybuild/modules/all:/tmp/eb-N02tlq/tmpgsEd9U/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
| == 2017-06-23 08:02:47,787 easyconfig.py:283 INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] | |
| == 2017-06-23 08:02:47,788 easyconfig.py:1125 INFO Successfully obtained EB_R class instance from easybuild.easyblocks.r | |
| == 2017-06-23 08:02:47,788 easyconfig.py:1141 INFO Successfully obtained class 'EB_R' for easyblock 'None' (software name 'R') | |
| == 2017-06-23 08:02:47,790 easyconfig.py:411 INFO Parsing easyconfig file None with rawcontent: name = 'R' | |
| version = "3.4.0" | |
| versionsuffix = '-bare.perftest2' | |
| homepage = 'http://www.r-project.org/' | |
| description = """R is a free software environment for statistical computing and graphics.""" | |
| toolchain = {'name': 'foss', 'version': '2015a'} | |
| toolchainopts = {"optarch": True, "defaultopt": True, "unroll": True} | |
| sources = [SOURCE_TAR_GZ] | |
| source_urls = ['https://cran.r-project.org/src/base/R-%(version_major)s'] | |
| preconfigopts = '' | |
| preconfigopts += 'BLAS_LIBS="$LIBBLAS" ' | |
| preconfigopts += 'LAPACK_LIBS="$LIBLAPACK" ' | |
| preconfigopts += 'CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" ' | |
| preconfigopts += 'LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" ' | |
| configopts = "" | |
| configopts += "--with-lapack " | |
| configopts += "--with-blas " | |
| configopts += "--with-pic --enable-threads --enable-R-shlib " | |
| configopts += "--enable-prebuilt-html --with-recommended-packages=no " | |
| configopts += "--with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no " | |
| dependencies = [ | |
| # ('BItexmf', '3.4.0'), | |
| ('PCRE', '8.36'), | |
| ('XZ', '5.2.0', '', ('GCC', '4.9.2')), | |
| ('zlib', '1.2.8'), | |
| ('bzip2', '1.0.6'), | |
| ('libreadline', '6.3'), | |
| ('ncurses', '5.9'), | |
| # ('LibTIFF', '4.0.3'), # capabilities("tiff") | |
| # ('libpng', '1.6.17'), # capabilities("png") | |
| # ('libjpeg-turbo', '1.4.0', '', ('GCC', '4.9.2')), # capabilities("jpeg") | |
| ('cURL', '7.40.0'), # capabilities("libcurl") | |
| # ('cairo', '1.14.2'), # capabilities("cairo") | |
| # ('Tk','8.6.3','-no-X11'), # capabilities("tcltk") | |
| # ('Tcl','8.6.3'), # capabilities("tcltk") | |
| # ('Java', '1.8.0_131', '', True), # Java bindings are built if Java is found, might as well provide it | |
| ] | |
| modextravars = { | |
| "R_HOME": "%(installdir)s/lib64/R", | |
| "R_DOC_DIR": "%(installdir)s/lib64/R/doc", | |
| "R_SHARE_DIR": "%(installdir)s/lib64/R/share", | |
| "R_INCLUDE_DIR": "%(installdir)s/lib64/R/include", | |
| } | |
| exts_list = [ | |
| # default libraries, only here to sanity check their presence | |
| 'base', | |
| 'datasets', | |
| 'graphics', | |
| 'grDevices', | |
| 'grid', | |
| 'methods', | |
| 'splines', | |
| 'stats', | |
| 'stats4', | |
| 'tools', | |
| 'utils', | |
| ] | |
| moduleclass = 'lang' | |
| == 2017-06-23 08:02:47,790 parser.py:138 INFO Type checking of easyconfig parameter values passed! | |
| == 2017-06-23 08:02:47,790 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:47,791 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,791 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,791 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,791 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,791 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/share with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,792 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/doc with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,792 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R/include with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,792 easyconfig.py:1209 WARNING Unable to resolve template value %(installdir)s/lib64/R with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,792 easyconfig.py:444 INFO setting config option modextravars: value {'R_SHARE_DIR': '%(installdir)s/lib64/R/share', 'R_DOC_DIR': '%(installdir)s/lib64/R/doc', 'R_HOME': '%(installdir)s/lib64/R', 'R_INCLUDE_DIR': '%(installdir)s/lib64/R/include'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:47,792 easyconfig.py:444 INFO setting config option toolchain: value {'version': '2015a', 'name': 'foss'} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:47,792 easyconfig.py:444 INFO setting config option name: value R (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,793 easyconfig.py:444 INFO setting config option exts_list: value ['base', 'datasets', 'graphics', 'grDevices', 'grid', 'methods', 'splines', 'stats', 'stats4', 'tools', 'utils'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:47,793 easyconfig.py:444 INFO setting config option moduleclass: value lang (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,793 easyconfig.py:444 INFO setting config option preconfigopts: value BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK" CFLAGS="$(pkg-config --cflags libpcre zlib liblzma) -I$EBROOTBZIP2/include -I$EBROOTLIBREADLINE/include" LDFLAGS="$(pkg-config --libs libpcre zlib liblzma) -L$EBROOTBZIP2/lib -L$EBROOTLIBREADLINE/lib" (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,793 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,793 easyconfig.py:1209 WARNING Unable to resolve template value %(name)s-%(version)s.tar.gz with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,793 easyconfig.py:444 INFO setting config option sources: value ['%(name)s-%(version)s.tar.gz'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:47,794 easyconfig.py:444 INFO setting config option versionsuffix: value -bare.perftest2 (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,794 easyconfig.py:444 INFO setting config option version: value 3.4.0 (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,794 easyconfig.py:444 INFO setting config option dependencies: value [{'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '4.9.2', 'name': 'GCC'}, 'name': 'XZ', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.2.0', 'toolchain_inherited': False, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}] (type: <type 'list'>) | |
| == 2017-06-23 08:02:47,795 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,795 easyconfig.py:1209 WARNING Unable to resolve template value https://cran.r-project.org/src/base/R-%(version_major)s with dict {'versionprefix': '', 'versionsuffix': '', 'toolchain_name': 'foss', 'toolchain_version': '2015a'} | |
| == 2017-06-23 08:02:47,795 easyconfig.py:444 INFO setting config option source_urls: value ['https://cran.r-project.org/src/base/R-%(version_major)s'] (type: <type 'list'>) | |
| == 2017-06-23 08:02:47,795 easyconfig.py:444 INFO setting config option toolchainopts: value {'optarch': True, 'unroll': True, 'defaultopt': True} (type: <type 'dict'>) | |
| == 2017-06-23 08:02:47,796 easyconfig.py:444 INFO setting config option homepage: value http://www.r-project.org/ (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,796 easyconfig.py:444 INFO setting config option configopts: value --with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --enable-prebuilt-html --with-recommended-packages=no --with-x=no --with-tcltk=no --with-cairo=no --with-libpng=no --with-jpeglib=no --with-libtiff=no (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,796 easyconfig.py:444 INFO setting config option description: value R is a free software environment for statistical computing and graphics. (type: <type 'str'>) | |
| == 2017-06-23 08:02:47,797 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '8.36', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:47,798 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.2.8', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:47,798 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'bzip2', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.0.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:47,799 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:47,800 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'ncurses', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '5.9', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:47,800 easyconfig.py:1483 INFO Minimally resolving dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2015a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '7.40.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False} using toolchain {'version': '2015a', 'name': 'foss'} | |
| == 2017-06-23 08:02:47,800 easyconfig.py:467 INFO Validating easyconfig | |
| == 2017-06-23 08:02:47,801 easyconfig.py:472 INFO Checking OS dependencies | |
| == 2017-06-23 08:02:47,801 easyconfig.py:527 INFO OS dependencies ok: [] | |
| == 2017-06-23 08:02:47,801 easyconfig.py:477 INFO Checking skipsteps | |
| == 2017-06-23 08:02:47,801 easyconfig.py:482 INFO Checking build option lists | |
| == 2017-06-23 08:02:47,801 easyconfig.py:485 INFO Checking licenses | |
| == 2017-06-23 08:02:47,891 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64/R/lib:/apps/prod/easybuild/software/R/3.4.0-foss-2015a-bare.perftest2/lib64:/apps/prod/easybuild/software/cURL/7.40.0-foss-2015a/lib:/apps/prod/easybuild/software/libreadline/6.3-foss-2015a/lib:/apps/prod/easybuild/software/ncurses/5.9-foss-2015a/lib:/apps/prod/easybuild/software/bzip2/1.0.6-foss-2015a/lib:/apps/prod/easybuild/software/zlib/1.2.8-foss-2015a/lib:/apps/prod/easybuild/software/XZ/5.2 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment