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install perlbrew, perl, cpanminus, and transposome on a system with a broken wget
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#!/bin/bash | |
##NB: Follow these instructions for installing Transposome: http://sestaton.github.io/Transposome | |
## What follows is to help users on really old Linux systems with a broken wget and no admin privileges. | |
export PERLBREW_ROOT=$HOME/perl5/perlbrew | |
export PERLBREW_HOME=$HOME/.perlbrew | |
# install perlbrew and patchperl | |
echo "Downloading perlbrew..." | |
\curl -kL http://install.perlbrew.pl |sed 's/curl\ -f/curl\ -k\ -f/g' |bash | |
\curl -kL https://raw.github.com/gugod/patchperl-packing/master/patchperl > $PERLBREW_ROOT/bin/patchperl | |
echo "Done with perlbrew." | |
echo "Downloading patchperl..." | |
chmod 755 $PERLBREW_ROOT/bin/patchperl | |
echo "Done with patchperl." | |
## download and compile perl | |
perlbrew --notest install perl-5.20.1 -Dusethreads | |
source $PERLBREW_ROOT/etc/bashrc | |
perlbrew use perl-5.20.2 | |
## install cpanminus | |
curl -kL cpanmin.us > $PERLBREW_ROOT/bin/cpanm | |
chmod 755 $PERLBREW_ROOT/bin/cpanm | |
## install Transposome | |
echo "Downloading Transposome..." | |
cpanm git://github.com/sestaton/Transposome.git | |
echo "Done with Transposome. Test your installation now by typing 'transposome --help'" |
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