sestaton

#!/usr/bin/env perl

use 5.010;
use strict;
use warnings;

my %hash = (
    id  => undef,
    id2 => 2,
    );

sestaton

#!/bin/bash

##NB: Follow these instructions for installing Transposome: http://sestaton.github.io/Transposome
##    What follows is to help users on really old Linux systems with a broken wget and no admin privileges. 

export PERLBREW_ROOT=$HOME/perl5/perlbrew
export PERLBREW_HOME=$HOME/.perlbrew

# install perlbrew and patchperl
echo "Downloading perlbrew..."

sestaton

#!/usr/bin/env perl

use 5.010;
use strict;
use warnings;

while (<DATA>) {
    chomp;
    my ($query, $subject, $percent_identity, $alignment_length, $mistmatches, 
        $gap_openings, $q_start, $q_end, $s_start, $s_end, $e_value, $bit_score) = split /\t/;

sestaton

#!/bin/bash

## Location for local build of gmpy2 and deps
cd apps
mkdir gmpy2 && cd gmpy2

## Download and compile gmp
wget https://ftp.gnu.org/gnu/gmp/gmp-5.1.3.tar.bz2 && tar xjf gmp-5.1.3.tar.bz2
cd gmp-5.1.3
./configure --prefix=/home/jmblab/statonse/apps/gmpy2

sestaton

#!/usr/bin/env perl

use strict;
use warnings;
use Bio::Factory::EMBOSS;

my $usage   = "perl $0 in.fq out.fa";
my $infile  = shift or die $usage;
my $outfile = shift or die $usage;

sestaton

#!/usr/bin/env perl                                                                                                                                                

use 5.010;
use utf8;
use strict;
use warnings;
use Bio::DB::EUtilities;
use XML::LibXML;

my @ids = (23298400);